RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 ANKRD26Q9UPS8 1709 aa28.4■■■□□ 2.14
CLN3-209ENST00000561689 FBLN1P23142 703 aa28.4■■■□□ 2.14
CLN3-209ENST00000561689 COG3Q96JB2 828 aa28.39■■■□□ 2.14
CLN3-209ENST00000561689 CFAP53Q96M91 514 aa28.39■■■□□ 2.14
CLN3-209ENST00000561689 BLMP54132 1417 aaPredicted RBP28.38■■■□□ 2.13
CLN3-209ENST00000561689 INSRP06213 1382 aa28.38■■■□□ 2.13
CLN3-209ENST00000561689 TMEM94Q12767 1356 aa28.37■■■□□ 2.13
CLN3-209ENST00000561689 PHF8Q9UPP1 1060 aa28.37■■■□□ 2.13
CLN3-209ENST00000561689 SSH2Q76I76 1423 aa28.37■■■□□ 2.13
CLN3-209ENST00000561689 C19orf44Q9H6X5 657 aa28.37■■■□□ 2.13
CLN3-209ENST00000561689 ESCO1Q5FWF5 840 aa28.36■■■□□ 2.13
CLN3-209ENST00000561689 SALL2Q9Y467 1007 aaPredicted RBP28.36■■■□□ 2.13
CLN3-209ENST00000561689 STRCP1A6NGW2 1772 aa28.36■■■□□ 2.13
CLN3-209ENST00000561689 NRKQ7Z2Y5 1582 aa28.35■■■□□ 2.13
CLN3-209ENST00000561689 POLKQ9UBT6 870 aa28.32■■■□□ 2.12
CLN3-209ENST00000561689 PPM1GO15355 546 aaPredicted RBP28.31■■■□□ 2.12
CLN3-209ENST00000561689 CCDC146Q8IYE0 955 aa28.31■■■□□ 2.12
CLN3-209ENST00000561689 TTC21AQ8NDW8 1320 aa28.31■■■□□ 2.12
CLN3-209ENST00000561689 ORAI2Q96SN7 254 aa28.3■■■□□ 2.12
CLN3-209ENST00000561689 ZNF335Q9H4Z2 1342 aaPredicted RBP28.29■■■□□ 2.12
CLN3-209ENST00000561689 EMILIN1Q9Y6C2 1016 aa28.28■■■□□ 2.12
CLN3-209ENST00000561689 ATF3P18847 181 aa28.27■■■□□ 2.12
CLN3-209ENST00000561689 OVOS2A0A0J9YW53 1432 aa28.27■■■□□ 2.12
CLN3-209ENST00000561689 OVOS2Q6IE36 1432 aa28.27■■■□□ 2.12
CLN3-209ENST00000561689 SHPRHQ149N8 1683 aa28.27■■■□□ 2.12
CLN3-209ENST00000561689 AATKQ6ZMQ8 1374 aa28.26■■■□□ 2.11
CLN3-209ENST00000561689 NCOA3Q9Y6Q9 1424 aa28.26■■■□□ 2.11
CLN3-209ENST00000561689 PAK3O75914 559 aaPredicted RBP28.26■■■□□ 2.11
CLN3-209ENST00000561689 RRS1Q15050 365 aaKnown RBP28.26■■■□□ 2.11
CLN3-209ENST00000561689 PSME1Q06323 249 aa28.24■■■□□ 2.11
CLN3-209ENST00000561689 PNPLA6Q8IY17 1366 aa28.24■■■□□ 2.11
CLN3-209ENST00000561689 COL3A1P02461 1466 aaPredicted RBP28.24■■■□□ 2.11
CLN3-209ENST00000561689 C1orf167Q5SNV9 1468 aa28.23■■■□□ 2.11
CLN3-209ENST00000561689 U2AF1L5P0DN76 240 aaPredicted RBP28.23■■■□□ 2.11
CLN3-209ENST00000561689 U2AF1Q01081 240 aaKnown RBP eCLIP28.23■■■□□ 2.11
CLN3-209ENST00000561689 SOX12O15370 315 aa28.22■■■□□ 2.11
CLN3-209ENST00000561689 U2SURPO15042 1029 aaKnown RBP28.22■■■□□ 2.11
CLN3-209ENST00000561689 FOXO3O43524 673 aa28.22■■■□□ 2.11
CLN3-209ENST00000561689 DIAPH1O60610 1272 aaKnown RBP28.22■■■□□ 2.11
CLN3-209ENST00000561689 NUTM2GQ5VZR2 741 aa28.22■■■□□ 2.11
CLN3-209ENST00000561689 NUDCQ9Y266 331 aa28.22■■■□□ 2.11
CLN3-209ENST00000561689 NLRP6P59044 892 aa28.21■■■□□ 2.11
CLN3-209ENST00000561689 APAF1O14727 1248 aa28.2■■■□□ 2.11
CLN3-209ENST00000561689 ABTB2Q8N961 1025 aa28.2■■■□□ 2.11
CLN3-209ENST00000561689 USP31Q70CQ4 1352 aa28.2■■■□□ 2.1
CLN3-209ENST00000561689 DCCP43146 1447 aa28.19■■■□□ 2.1
CLN3-209ENST00000561689 XPCQ01831 940 aaPredicted RBP28.19■■■□□ 2.1
CLN3-209ENST00000561689 CADPS2Q86UW7 1296 aa28.19■■■□□ 2.1
CLN3-209ENST00000561689 DMRT2Q9Y5R5 561 aa28.19■■■□□ 2.1
CLN3-209ENST00000561689 MSH6P52701 1360 aa28.18■■■□□ 2.1
CLN3-209ENST00000561689 MST1RQ04912 1400 aa28.18■■■□□ 2.1
CLN3-209ENST00000561689 SMG6Q86US8 1419 aaKnown RBP28.18■■■□□ 2.1
CLN3-209ENST00000561689 PIK3C2AO00443 1686 aa28.17■■■□□ 2.1
CLN3-209ENST00000561689 LRRC7Q96NW7 1537 aa28.17■■■□□ 2.1
CLN3-209ENST00000561689 MAP2P11137 1827 aaKnown RBP28.17■■■□□ 2.1
CLN3-209ENST00000561689 RUNDC1Q96C34 613 aa28.15■■■□□ 2.1
CLN3-209ENST00000561689 CDK12Q9NYV4 1490 aaPredicted RBP28.14■■■□□ 2.1
CLN3-209ENST00000561689 CDCA7LQ96GN5 454 aa28.12■■■□□ 2.09
CLN3-209ENST00000561689 PDE3BQ13370 1112 aa28.11■■■□□ 2.09
CLN3-209ENST00000561689 IL13P35225 146 aa28.11■■■□□ 2.09
CLN3-209ENST00000561689 KRT28Q7Z3Y7 464 aa28.1■■■□□ 2.09
CLN3-209ENST00000561689 TCP11L2Q8N4U5 519 aa28.1■■■□□ 2.09
CLN3-209ENST00000561689 SUPT16HQ9Y5B9 1047 aaKnown RBP28.1■■■□□ 2.09
CLN3-209ENST00000561689 MAP3K19Q56UN5 1328 aa28.09■■■□□ 2.09
CLN3-209ENST00000561689 XIRP1Q702N8 1843 aaKnown RBP28.09■■■□□ 2.09
CLN3-209ENST00000561689 DDX17Q92841 729 aaKnown RBP28.08■■■□□ 2.09
CLN3-209ENST00000561689 RRP7AQ9Y3A4 280 aaKnown RBP28.08■■■□□ 2.09
CLN3-209ENST00000561689 ZNF521Q96K83 1311 aa28.07■■■□□ 2.08
CLN3-209ENST00000561689 NEUROD2Q15784 382 aa28.07■■■□□ 2.08
CLN3-209ENST00000561689 HSP90AB2PQ58FF8 381 aa28.06■■■□□ 2.08
CLN3-209ENST00000561689 PLEKHF1Q96S99 279 aa28.06■■■□□ 2.08
CLN3-209ENST00000561689 LMOD2Q6P5Q4 547 aa28.06■■■□□ 2.08
CLN3-209ENST00000561689 KIF1AQ12756 1690 aa28.05■■■□□ 2.08
CLN3-209ENST00000561689 HMOX1P09601 288 aa28.03■■■□□ 2.08
CLN3-209ENST00000561689 EIF4A2Q14240 407 aaKnown RBP28.03■■■□□ 2.08
CLN3-209ENST00000561689 IQSEC2Q5JU85 1478 aa28.03■■■□□ 2.08
CLN3-209ENST00000561689 PLEKHG5O94827 1062 aa28.02■■■□□ 2.08
CLN3-209ENST00000561689 AMPHP49418 695 aa28.02■■■□□ 2.08
CLN3-209ENST00000561689 NGEFQ8N5V2 710 aa28.02■■■□□ 2.08
CLN3-209ENST00000561689 PEAK1Q9H792 1746 aa28.02■■■□□ 2.08
CLN3-209ENST00000561689 MARF1Q9Y4F3 1742 aaKnown RBP28.02■■■□□ 2.08
CLN3-209ENST00000561689 FCHSD2O94868 740 aa28.02■■■□□ 2.08
CLN3-209ENST00000561689 SBNO1A3KN83 1393 aa28.01■■■□□ 2.07
CLN3-209ENST00000561689 GOLGA2Q08379 1002 aa28■■■□□ 2.07
CLN3-209ENST00000561689 RSPH6AQ9H0K4 717 aa28■■■□□ 2.07
CLN3-209ENST00000561689 SLAIN2Q9P270 581 aa28■■■□□ 2.07
CLN3-209ENST00000561689 MAPK8IP3Q9UPT6 1336 aa28■■■□□ 2.07
CLN3-209ENST00000561689 BRINP3Q76B58 766 aa27.99■■■□□ 2.07
CLN3-209ENST00000561689 WWC1Q8IX03 1113 aa27.99■■■□□ 2.07
CLN3-209ENST00000561689 PNNQ9H307 717 aaKnown RBP27.99■■■□□ 2.07
CLN3-209ENST00000561689 FLT4P35916 1363 aa27.99■■■□□ 2.07
CLN3-209ENST00000561689 USP54Q70EL1 1684 aa27.99■■■□□ 2.07
CLN3-209ENST00000561689 PRKAR2BP31323 418 aa27.99■■■□□ 2.07
CLN3-209ENST00000561689 NPHP3Q7Z494 1330 aa27.98■■■□□ 2.07
CLN3-209ENST00000561689 TRPM3Q9HCF6 1732 aaPredicted RBP27.96■■■□□ 2.07
CLN3-209ENST00000561689 NEFLP07196 543 aa27.95■■■□□ 2.07
CLN3-209ENST00000561689 FKBP8Q14318 412 aa27.95■■■□□ 2.07
CLN3-209ENST00000561689 KCNH5Q8NCM2 988 aa27.95■■■□□ 2.07
CLN3-209ENST00000561689 SPINK5Q9NQ38 1064 aaPredicted RBP27.95■■■□□ 2.07
CLN3-209ENST00000561689 HOXC9P31274 260 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 151.5 ms