RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 MAP2P11137 1827 aaKnown RBP13.85□□□□□ -0.19
USP3-219ENST00000561326 CENPBP07199 599 aaPredicted RBP13.84□□□□□ -0.19
USP3-219ENST00000561326 COG3Q96JB2 828 aa13.84□□□□□ -0.19
USP3-219ENST00000561326 ZNF335Q9H4Z2 1342 aaPredicted RBP13.84□□□□□ -0.19
USP3-219ENST00000561326 USP6P35125 1406 aa13.83□□□□□ -0.2
USP3-219ENST00000561326 PSME1Q06323 249 aa13.83□□□□□ -0.2
USP3-219ENST00000561326 PNISRQ8TF01 805 aaKnown RBP13.83□□□□□ -0.2
USP3-219ENST00000561326 TTC21BQ7Z4L5 1316 aa13.83□□□□□ -0.2
USP3-219ENST00000561326 TNNT2P45379 298 aaPredicted RBP13.82□□□□□ -0.2
USP3-219ENST00000561326 CFAP53Q96M91 514 aa13.82□□□□□ -0.2
USP3-219ENST00000561326 LRRC7Q96NW7 1537 aa13.81□□□□□ -0.2
USP3-219ENST00000561326 KIF1AQ12756 1690 aa13.81□□□□□ -0.2
USP3-219ENST00000561326 NME9Q86XW9 330 aa13.8□□□□□ -0.2
USP3-219ENST00000561326 SCAF1Q9H7N4 1312 aaKnown RBP13.8□□□□□ -0.2
USP3-219ENST00000561326 C1orf167Q5SNV9 1468 aa13.8□□□□□ -0.2
USP3-219ENST00000561326 NRKQ7Z2Y5 1582 aa13.79□□□□□ -0.2
USP3-219ENST00000561326 PAK3O75914 559 aaPredicted RBP13.79□□□□□ -0.2
USP3-219ENST00000561326 MTHFSP49914 203 aa13.79□□□□□ -0.2
USP3-219ENST00000561326 WDR43Q15061 677 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP3-219ENST00000561326 ORAI2Q96SN7 254 aa13.78□□□□□ -0.2
USP3-219ENST00000561326 SSH2Q76I76 1423 aa13.78□□□□□ -0.2
USP3-219ENST00000561326 FOXO3O43524 673 aa13.77□□□□□ -0.21
USP3-219ENST00000561326 MST1RQ04912 1400 aa13.77□□□□□ -0.21
USP3-219ENST00000561326 NLRP6P59044 892 aa13.76□□□□□ -0.21
USP3-219ENST00000561326 HNRNPUQ00839 825 aaKnown RBP eCLIP13.76□□□□□ -0.21
USP3-219ENST00000561326 ABTB2Q8N961 1025 aa13.76□□□□□ -0.21
USP3-219ENST00000561326 SLAIN2Q9P270 581 aa13.76□□□□□ -0.21
USP3-219ENST00000561326 USP31Q70CQ4 1352 aa13.75□□□□□ -0.21
USP3-219ENST00000561326 KRT28Q7Z3Y7 464 aa13.75□□□□□ -0.21
USP3-219ENST00000561326 NUDCQ9Y266 331 aa13.75□□□□□ -0.21
USP3-219ENST00000561326 INSRP06213 1382 aa13.74□□□□□ -0.21
USP3-219ENST00000561326 AATKQ6ZMQ8 1374 aa13.74□□□□□ -0.21
USP3-219ENST00000561326 ZRANB1Q9UGI0 708 aa13.74□□□□□ -0.21
USP3-219ENST00000561326 NPHP3Q7Z494 1330 aa13.73□□□□□ -0.21
USP3-219ENST00000561326 PPM1GO15355 546 aaPredicted RBP13.72□□□□□ -0.21
USP3-219ENST00000561326 POLKQ9UBT6 870 aa13.72□□□□□ -0.21
USP3-219ENST00000561326 ADAMTS8Q9UP79 889 aa13.72□□□□□ -0.21
USP3-219ENST00000561326 PIK3C2AO00443 1686 aa13.72□□□□□ -0.21
USP3-219ENST00000561326 OVOS2A0A0J9YW53 1432 aa13.72□□□□□ -0.21
USP3-219ENST00000561326 OVOS2Q6IE36 1432 aa13.72□□□□□ -0.21
USP3-219ENST00000561326 USP54Q70EL1 1684 aa13.71□□□□□ -0.21
USP3-219ENST00000561326 DIAPH1O60610 1272 aaKnown RBP13.7□□□□□ -0.22
USP3-219ENST00000561326 KCNH5Q8NCM2 988 aa13.7□□□□□ -0.22
USP3-219ENST00000561326 PNNQ9H307 717 aaKnown RBP13.7□□□□□ -0.22
USP3-219ENST00000561326 LTBP4Q8N2S1 1624 aa13.69□□□□□ -0.22
USP3-219ENST00000561326 LMOD2Q6P5Q4 547 aa13.69□□□□□ -0.22
USP3-219ENST00000561326 TRPM3Q9HCF6 1732 aaPredicted RBP13.69□□□□□ -0.22
USP3-219ENST00000561326 XPCQ01831 940 aaPredicted RBP13.68□□□□□ -0.22
USP3-219ENST00000561326 NUTM2GQ5VZR2 741 aa13.68□□□□□ -0.22
USP3-219ENST00000561326 BRINP3Q76B58 766 aa13.68□□□□□ -0.22
USP3-219ENST00000561326 SBNO1A3KN83 1393 aa13.68□□□□□ -0.22
USP3-219ENST00000561326 PNPLA6Q8IY17 1366 aa13.68□□□□□ -0.22
USP3-219ENST00000561326 FBLN1P23142 703 aa13.67□□□□□ -0.22
USP3-219ENST00000561326 RRS1Q15050 365 aaKnown RBP13.67□□□□□ -0.22
USP3-219ENST00000561326 NGEFQ8N5V2 710 aa13.67□□□□□ -0.22
USP3-219ENST00000561326 ZBED9Q6R2W3 1325 aa13.66□□□□□ -0.22
USP3-219ENST00000561326 SHPRHQ149N8 1683 aa13.66□□□□□ -0.22
USP3-219ENST00000561326 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
USP3-219ENST00000561326 U2SURPO15042 1029 aaKnown RBP13.66□□□□□ -0.22
USP3-219ENST00000561326 SOX12O15370 315 aa13.66□□□□□ -0.22
USP3-219ENST00000561326 U2AF1L5P0DN76 240 aaPredicted RBP13.66□□□□□ -0.22
USP3-219ENST00000561326 AMPHP49418 695 aa13.66□□□□□ -0.22
USP3-219ENST00000561326 U2AF1Q01081 240 aaKnown RBP eCLIP13.66□□□□□ -0.228e-9■□□□□ 10.7
USP3-219ENST00000561326 EMILIN1Q9Y6C2 1016 aa13.66□□□□□ -0.22
USP3-219ENST00000561326 MARF1Q9Y4F3 1742 aaKnown RBP13.66□□□□□ -0.22
USP3-219ENST00000561326 CDK12Q9NYV4 1490 aaPredicted RBP13.66□□□□□ -0.22
USP3-219ENST00000561326 KIF24Q5T7B8 1368 aa13.65□□□□□ -0.22
USP3-219ENST00000561326 ALS2Q96Q42 1657 aa13.65□□□□□ -0.22
USP3-219ENST00000561326 LTN1O94822 1766 aa13.65□□□□□ -0.22
USP3-219ENST00000561326 BLMP54132 1417 aaPredicted RBP13.64□□□□□ -0.23
USP3-219ENST00000561326 ARHGEF10O15013 1369 aa13.64□□□□□ -0.23
USP3-219ENST00000561326 TOM1O60784 492 aa13.64□□□□□ -0.23
USP3-219ENST00000561326 NEFMP07197 916 aa13.64□□□□□ -0.23
USP3-219ENST00000561326 RUNDC1Q96C34 613 aa13.64□□□□□ -0.23
USP3-219ENST00000561326 DDX17Q92841 729 aaKnown RBP13.63□□□□□ -0.23
USP3-219ENST00000561326 MAP3K19Q56UN5 1328 aa13.63□□□□□ -0.23
USP3-219ENST00000561326 SPATA31A3Q5VYP0 1347 aa13.63□□□□□ -0.23
USP3-219ENST00000561326 COL3A1P02461 1466 aaPredicted RBP13.62□□□□□ -0.23
USP3-219ENST00000561326 PXDNQ92626 1479 aa13.62□□□□□ -0.23
USP3-219ENST00000561326 FLT4P35916 1363 aa13.62□□□□□ -0.23
USP3-219ENST00000561326 FCHSD2O94868 740 aa13.62□□□□□ -0.23
USP3-219ENST00000561326 GCP02774 474 aa13.62□□□□□ -0.23
USP3-219ENST00000561326 TNS3Q68CZ2 1445 aa13.62□□□□□ -0.23
USP3-219ENST00000561326 SOS2Q07890 1332 aaPredicted RBP13.62□□□□□ -0.23
USP3-219ENST00000561326 IL13P35225 146 aa13.61□□□□□ -0.23
USP3-219ENST00000561326 CCDC146Q8IYE0 955 aa13.61□□□□□ -0.23
USP3-219ENST00000561326 USP19O94966 1318 aa13.61□□□□□ -0.23
USP3-219ENST00000561326 NHSL1Q5SYE7 1610 aa13.61□□□□□ -0.23
USP3-219ENST00000561326 PDE3BQ13370 1112 aa13.6□□□□□ -0.23
USP3-219ENST00000561326 HSP90AB2PQ58FF8 381 aa13.6□□□□□ -0.23
USP3-219ENST00000561326 IP6K1Q92551 441 aa13.6□□□□□ -0.23
USP3-219ENST00000561326 SLIT3O75094 1523 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 APAF1O14727 1248 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 HOXC9P31274 260 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 ROBO1Q9Y6N7 1651 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 MAPK8IP3Q9UPT6 1336 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 PEAK1Q9H792 1746 aa13.59□□□□□ -0.23
USP3-219ENST00000561326 RTL1A6NKG5 1358 aa13.58□□□□□ -0.23
USP3-219ENST00000561326 PLEKHG5O94827 1062 aa13.58□□□□□ -0.24
USP3-219ENST00000561326 EIF4A2Q14240 407 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms