RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 ACEP12821 1306 aa12.97□□□□□ -0.33
HERC1-206ENST00000559996 PITPNM1O00562 1244 aa12.97□□□□□ -0.33
HERC1-206ENST00000559996 PMFBP1Q8TBY8 1022 aa12.97□□□□□ -0.33
HERC1-206ENST00000559996 A0A1W2PP64 1363 aa12.96□□□□□ -0.33
HERC1-206ENST00000559996 ANKRD36BQ8N2N9 1353 aa12.96□□□□□ -0.33
HERC1-206ENST00000559996 PIP4P2Q8N4L2 257 aa12.96□□□□□ -0.33
HERC1-206ENST00000559996 SSH2Q76I76 1423 aa12.96□□□□□ -0.34
HERC1-206ENST00000559996 ESCO1Q5FWF5 840 aa12.95□□□□□ -0.34
HERC1-206ENST00000559996 CERKQ8TCT0 537 aa12.95□□□□□ -0.34
HERC1-206ENST00000559996 PHF8Q9UPP1 1060 aa12.95□□□□□ -0.34
HERC1-206ENST00000559996 BRINP3Q76B58 766 aa12.94□□□□□ -0.34
HERC1-206ENST00000559996 ZNF692Q9BU19 519 aaPredicted RBP12.94□□□□□ -0.34
HERC1-206ENST00000559996 IQSEC2Q5JU85 1478 aa12.93□□□□□ -0.34
HERC1-206ENST00000559996 AMER1Q5JTC6 1135 aaPredicted RBP12.93□□□□□ -0.34
HERC1-206ENST00000559996 AKAP12Q02952 1782 aa12.93□□□□□ -0.34
HERC1-206ENST00000559996 ITSN1Q15811 1721 aa12.92□□□□□ -0.34
HERC1-206ENST00000559996 DIEXFQ68CQ4 756 aaKnown RBP12.92□□□□□ -0.34
HERC1-206ENST00000559996 DDX17Q92841 729 aaKnown RBP12.92□□□□□ -0.34
HERC1-206ENST00000559996 TERF2IPQ9NYB0 399 aa12.92□□□□□ -0.34
HERC1-206ENST00000559996 USP6P35125 1406 aa12.91□□□□□ -0.34
HERC1-206ENST00000559996 FOXO3O43524 673 aa12.91□□□□□ -0.34
HERC1-206ENST00000559996 NSD3Q9BZ95 1437 aa12.9□□□□□ -0.34
HERC1-206ENST00000559996 FYB1O15117 783 aa12.9□□□□□ -0.34
HERC1-206ENST00000559996 HDGFL2Q7Z4V5 671 aaPredicted RBP12.9□□□□□ -0.34
HERC1-206ENST00000559996 NGDNQ8NEJ9 315 aaKnown RBP12.9□□□□□ -0.34
HERC1-206ENST00000559996 KTN1Q86UP2 1357 aaKnown RBP12.9□□□□□ -0.34
HERC1-206ENST00000559996 MON2Q7Z3U7 1717 aa12.9□□□□□ -0.34
HERC1-206ENST00000559996 TTC21BQ7Z4L5 1316 aa12.89□□□□□ -0.35
HERC1-206ENST00000559996 NPC1L1Q9UHC9 1359 aa12.89□□□□□ -0.35
HERC1-206ENST00000559996 NRKQ7Z2Y5 1582 aa12.89□□□□□ -0.35
HERC1-206ENST00000559996 EDC4Q6P2E9 1401 aaKnown RBP12.88□□□□□ -0.35
HERC1-206ENST00000559996 SPDYE2BA6NHP3 402 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 SPDYE6P0CI01 402 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 SPDYE2Q495Y8 402 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 KRT28Q7Z3Y7 464 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 ZRANB1Q9UGI0 708 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 KNSTRNQ9Y448 316 aa12.88□□□□□ -0.35
HERC1-206ENST00000559996 KIF1AQ12756 1690 aa12.87□□□□□ -0.35
HERC1-206ENST00000559996 PXDNQ92626 1479 aa12.87□□□□□ -0.35
HERC1-206ENST00000559996 TOM1O60784 492 aa12.87□□□□□ -0.35
HERC1-206ENST00000559996 SOS2Q07890 1332 aaPredicted RBP12.87□□□□□ -0.35
HERC1-206ENST00000559996 TRPM3Q9HCF6 1732 aaPredicted RBP12.86□□□□□ -0.35
HERC1-206ENST00000559996 XPCQ01831 940 aaPredicted RBP12.86□□□□□ -0.35
HERC1-206ENST00000559996 PSME1Q06323 249 aa12.86□□□□□ -0.35
HERC1-206ENST00000559996 NME9Q86XW9 330 aa12.86□□□□□ -0.35
HERC1-206ENST00000559996 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.86□□□□□ -0.35
HERC1-206ENST00000559996 BRD4O60885 1362 aaPredicted RBP12.85□□□□□ -0.35
HERC1-206ENST00000559996 UBAP1LF5GYI3 381 aa12.85□□□□□ -0.35
HERC1-206ENST00000559996 PRKRIP1Q9H875 184 aaPredicted RBP12.85□□□□□ -0.35
HERC1-206ENST00000559996 ROBO1Q9Y6N7 1651 aa12.85□□□□□ -0.35
HERC1-206ENST00000559996 CC2D1BQ5T0F9 858 aaKnown RBP12.84□□□□□ -0.35
HERC1-206ENST00000559996 SP7Q8TDD2 431 aaPredicted RBP12.84□□□□□ -0.35
HERC1-206ENST00000559996 GGNBP2Q9H3C7 697 aa12.84□□□□□ -0.35
HERC1-206ENST00000559996 CGNL1Q0VF96 1302 aa12.84□□□□□ -0.35
HERC1-206ENST00000559996 NPHP3Q7Z494 1330 aa12.84□□□□□ -0.35
HERC1-206ENST00000559996 TTC21AQ8NDW8 1320 aa12.84□□□□□ -0.35
HERC1-206ENST00000559996 NHSL1Q5SYE7 1610 aa12.84□□□□□ -0.35
HERC1-206ENST00000559996 SBNO1A3KN83 1393 aa12.83□□□□□ -0.36
HERC1-206ENST00000559996 USP31Q70CQ4 1352 aa12.83□□□□□ -0.36
HERC1-206ENST00000559996 PARD3Q8TEW0 1356 aa12.83□□□□□ -0.36
HERC1-206ENST00000559996 MKRN4PQ13434 485 aaPredicted RBP12.83□□□□□ -0.36
HERC1-206ENST00000559996 MIER1Q8N108 512 aa12.83□□□□□ -0.36
HERC1-206ENST00000559996 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
HERC1-206ENST00000559996 FBLN1P23142 703 aa12.82□□□□□ -0.36
HERC1-206ENST00000559996 FXR2P51116 673 aaKnown RBP eCLIP12.82□□□□□ -0.36
HERC1-206ENST00000559996 PIK3C2AO00443 1686 aa12.82□□□□□ -0.36
HERC1-206ENST00000559996 ALS2Q96Q42 1657 aa12.82□□□□□ -0.36
HERC1-206ENST00000559996 SPATA31A3Q5VYP0 1347 aa12.82□□□□□ -0.36
HERC1-206ENST00000559996 AHDC1Q5TGY3 1603 aaPredicted RBP12.81□□□□□ -0.36
HERC1-206ENST00000559996 PIP4K2BP78356 416 aa12.81□□□□□ -0.36
HERC1-206ENST00000559996 NSD2O96028 1365 aa12.81□□□□□ -0.36
HERC1-206ENST00000559996 OVOS2A0A0J9YW53 1432 aa12.8□□□□□ -0.36
HERC1-206ENST00000559996 OVOS2Q6IE36 1432 aa12.8□□□□□ -0.36
HERC1-206ENST00000559996 CNGB1Q14028 1251 aaPredicted RBP12.8□□□□□ -0.36
HERC1-206ENST00000559996 NUTM2GQ5VZR2 741 aa12.8□□□□□ -0.36
HERC1-206ENST00000559996 ABTB2Q8N961 1025 aa12.8□□□□□ -0.36
HERC1-206ENST00000559996 USP54Q70EL1 1684 aa12.8□□□□□ -0.36
HERC1-206ENST00000559996 KIF20BQ96Q89 1820 aa12.79□□□□□ -0.36
HERC1-206ENST00000559996 PAK3O75914 559 aaPredicted RBP12.79□□□□□ -0.36
HERC1-206ENST00000559996 RALBP1Q15311 655 aa12.79□□□□□ -0.36
HERC1-206ENST00000559996 CCDC184Q52MB2 194 aa12.79□□□□□ -0.36
HERC1-206ENST00000559996 HAX1O00165 279 aa12.78□□□□□ -0.36
HERC1-206ENST00000559996 ANP32CO43423 234 aa12.78□□□□□ -0.36
HERC1-206ENST00000559996 NLRP6P59044 892 aa12.78□□□□□ -0.36
HERC1-206ENST00000559996 ANKRD26Q9UPS8 1709 aa12.78□□□□□ -0.36
HERC1-206ENST00000559996 TNS3Q68CZ2 1445 aa12.78□□□□□ -0.36
HERC1-206ENST00000559996 PPP2R1AP30153 589 aa12.77□□□□□ -0.37
HERC1-206ENST00000559996 MORC1Q86VD1 984 aa12.77□□□□□ -0.37
HERC1-206ENST00000559996 USP19O94966 1318 aa12.77□□□□□ -0.37
HERC1-206ENST00000559996 MED1Q15648 1581 aaPredicted RBP12.77□□□□□ -0.37
HERC1-206ENST00000559996 COL16A1Q07092 1604 aaPredicted RBP12.77□□□□□ -0.37
HERC1-206ENST00000559996 NLRP13Q86W25 1043 aa12.76□□□□□ -0.37
HERC1-206ENST00000559996 LRRC59Q96AG4 307 aaKnown RBP12.76□□□□□ -0.37
HERC1-206ENST00000559996 COG3Q96JB2 828 aa12.76□□□□□ -0.37
HERC1-206ENST00000559996 POLKQ9UBT6 870 aa12.76□□□□□ -0.37
HERC1-206ENST00000559996 AATKQ6ZMQ8 1374 aa12.76□□□□□ -0.37
HERC1-206ENST00000559996 SLIT3O75094 1523 aa12.75□□□□□ -0.37
HERC1-206ENST00000559996 CRYBG1Q9Y4K1 1723 aa12.75□□□□□ -0.37
HERC1-206ENST00000559996 MYBBP1AQ9BQG0 1328 aaKnown RBP12.74□□□□□ -0.37
HERC1-206ENST00000559996 GCP02774 474 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms