RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 LRRC59Q96AG4 307 aaKnown RBP30.15■■■□□ 2.42
SNX1-206ENST00000559389 SPATA31A3Q5VYP0 1347 aa30.15■■■□□ 2.42
SNX1-206ENST00000559389 KTN1Q86UP2 1357 aaKnown RBP30.13■■■□□ 2.41
SNX1-206ENST00000559389 CCDC7Q96M83 1385 aa30.13■■■□□ 2.41
SNX1-206ENST00000559389 TERF2IPQ9NYB0 399 aa30.12■■■□□ 2.41
SNX1-206ENST00000559389 MED1Q15648 1581 aaPredicted RBP30.11■■■□□ 2.41
SNX1-206ENST00000559389 HDGFL2Q7Z4V5 671 aaPredicted RBP30.11■■■□□ 2.41
SNX1-206ENST00000559389 POLR3GLQ9BT43 218 aa30.11■■■□□ 2.41
SNX1-206ENST00000559389 ZNF692Q9BU19 519 aaPredicted RBP30.11■■■□□ 2.41
SNX1-206ENST00000559389 ARHGEF10O15013 1369 aa30.1■■■□□ 2.41
SNX1-206ENST00000559389 PIK3C2AO00443 1686 aa30.09■■■□□ 2.41
SNX1-206ENST00000559389 WASHC2AQ641Q2 1341 aa30.09■■■□□ 2.41
SNX1-206ENST00000559389 EDC4Q6P2E9 1401 aaKnown RBP30.09■■■□□ 2.41
SNX1-206ENST00000559389 ABCA3Q99758 1704 aa30.08■■■□□ 2.41
SNX1-206ENST00000559389 CRYBG1Q9Y4K1 1723 aa30.08■■■□□ 2.41
SNX1-206ENST00000559389 PAK3O75914 559 aaPredicted RBP30.04■■■□□ 2.4
SNX1-206ENST00000559389 USP54Q70EL1 1684 aa30.04■■■□□ 2.4
SNX1-206ENST00000559389 TTC21BQ7Z4L5 1316 aa30.03■■■□□ 2.4
SNX1-206ENST00000559389 SPATA31A6Q5VVP1 1343 aa30.02■■■□□ 2.4
SNX1-206ENST00000559389 TTC21AQ8NDW8 1320 aa30.02■■■□□ 2.4
SNX1-206ENST00000559389 MARF1Q9Y4F3 1742 aaKnown RBP30.02■■■□□ 2.4
SNX1-206ENST00000559389 PHRF1Q9P1Y6 1649 aaKnown RBP30.01■■■□□ 2.39
SNX1-206ENST00000559389 LRP6O75581 1613 aa30■■■□□ 2.39
SNX1-206ENST00000559389 LMOD2Q6P5Q4 547 aa29.99■■■□□ 2.39
SNX1-206ENST00000559389 NSD3Q9BZ95 1437 aa29.98■■■□□ 2.39
SNX1-206ENST00000559389 KIF20BQ96Q89 1820 aa29.98■■■□□ 2.39
SNX1-206ENST00000559389 CARD14Q9BXL6 1004 aa29.96■■■□□ 2.39
SNX1-206ENST00000559389 ABTB2Q8N961 1025 aa29.95■■■□□ 2.39
SNX1-206ENST00000559389 SLIT3O75094 1523 aa29.95■■■□□ 2.38
SNX1-206ENST00000559389 USP19O94966 1318 aa29.95■■■□□ 2.38
SNX1-206ENST00000559389 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.94■■■□□ 2.38
SNX1-206ENST00000559389 USP31Q70CQ4 1352 aa29.93■■■□□ 2.38
SNX1-206ENST00000559389 PANK3Q9H999 370 aa29.93■■■□□ 2.38
SNX1-206ENST00000559389 OVOS2A0A0J9YW53 1432 aa29.92■■■□□ 2.38
SNX1-206ENST00000559389 OVOS2Q6IE36 1432 aa29.92■■■□□ 2.38
SNX1-206ENST00000559389 NUTM2GQ5VZR2 741 aa29.91■■■□□ 2.38
SNX1-206ENST00000559389 NME9Q86XW9 330 aa29.91■■■□□ 2.38
SNX1-206ENST00000559389 NLRP13Q86W25 1043 aa29.89■■■□□ 2.38
SNX1-206ENST00000559389 CABLES1Q8TDN4 633 aa29.89■■■□□ 2.38
SNX1-206ENST00000559389 NUTM2BA6NNL0 878 aaPredicted RBP29.88■■■□□ 2.37
SNX1-206ENST00000559389 NUTM2EB1AL46 878 aaPredicted RBP29.88■■■□□ 2.37
SNX1-206ENST00000559389 NLRP6P59044 892 aa29.88■■■□□ 2.37
SNX1-206ENST00000559389 NUTM2AQ8IVF1 878 aaPredicted RBP29.88■■■□□ 2.37
SNX1-206ENST00000559389 ANKRD26Q9UPS8 1709 aa29.87■■■□□ 2.37
SNX1-206ENST00000559389 PLEKHG5O94827 1062 aa29.85■■■□□ 2.37
SNX1-206ENST00000559389 ZRANB1Q9UGI0 708 aa29.85■■■□□ 2.37
SNX1-206ENST00000559389 NFAT5O94916 1531 aa29.85■■■□□ 2.37
SNX1-206ENST00000559389 CGNL1Q0VF96 1302 aa29.84■■■□□ 2.37
SNX1-206ENST00000559389 FYB1O15117 783 aa29.82■■■□□ 2.36
SNX1-206ENST00000559389 HAP1P54257 671 aaPredicted RBP29.82■■■□□ 2.36
SNX1-206ENST00000559389 NSD2O96028 1365 aa29.79■■■□□ 2.36
SNX1-206ENST00000559389 ADAMTS2O95450 1211 aa29.79■■■□□ 2.36
SNX1-206ENST00000559389 GGNBP2Q9H3C7 697 aa29.79■■■□□ 2.36
SNX1-206ENST00000559389 ZNF316A6NFI3 1004 aaPredicted RBP29.78■■■□□ 2.36
SNX1-206ENST00000559389 PER1O15534 1290 aaPredicted RBP29.78■■■□□ 2.36
SNX1-206ENST00000559389 PLCH1Q4KWH8 1693 aa29.78■■■□□ 2.36
SNX1-206ENST00000559389 CPDO75976 1380 aa29.77■■■□□ 2.36
SNX1-206ENST00000559389 COL14A1Q05707 1796 aaKnown RBP29.77■■■□□ 2.36
SNX1-206ENST00000559389 GCP02774 474 aa29.77■■■□□ 2.36
SNX1-206ENST00000559389 COG3Q96JB2 828 aa29.77■■■□□ 2.36
SNX1-206ENST00000559389 KNSTRNQ9Y448 316 aa29.77■■■□□ 2.36
SNX1-206ENST00000559389 MEX3CQ5U5Q3 659 aaKnown RBP29.76■■■□□ 2.35
SNX1-206ENST00000559389 KCNH5Q8NCM2 988 aa29.75■■■□□ 2.35
SNX1-206ENST00000559389 KIAA0232Q92628 1395 aa29.75■■■□□ 2.35
SNX1-206ENST00000559389 AMER1Q5JTC6 1135 aaPredicted RBP29.74■■■□□ 2.35
SNX1-206ENST00000559389 LMO7Q8WWI1 1683 aa29.73■■■□□ 2.35
SNX1-206ENST00000559389 NWD2Q9ULI1 1742 aa29.73■■■□□ 2.35
SNX1-206ENST00000559389 LTN1O94822 1766 aa29.72■■■□□ 2.35
SNX1-206ENST00000559389 ABCC6O95255 1503 aa29.71■■■□□ 2.35
SNX1-206ENST00000559389 C8orf37Q96NL8 207 aa29.71■■■□□ 2.35
SNX1-206ENST00000559389 NPC1L1Q9UHC9 1359 aa29.71■■■□□ 2.35
SNX1-206ENST00000559389 SLIT2O94813 1529 aa29.71■■■□□ 2.35
SNX1-206ENST00000559389 ZC3H6P61129 1189 aaKnown RBP29.7■■■□□ 2.35
SNX1-206ENST00000559389 NRAPQ86VF7 1730 aa29.7■■■□□ 2.34
SNX1-206ENST00000559389 TNKS1BP1Q9C0C2 1729 aaKnown RBP29.69■■■□□ 2.34
SNX1-206ENST00000559389 SOX12O15370 315 aa29.69■■■□□ 2.34
SNX1-206ENST00000559389 PRDM11Q9NQV5 511 aa29.69■■■□□ 2.34
SNX1-206ENST00000559389 COL18A1P39060 1754 aa29.69■■■□□ 2.34
SNX1-206ENST00000559389 FAM83GA6ND36 823 aa29.66■■■□□ 2.34
SNX1-206ENST00000559389 DDX10Q13206 875 aaKnown RBP29.66■■■□□ 2.34
SNX1-206ENST00000559389 ARHGEF25Q86VW2 580 aa29.65■■■□□ 2.34
SNX1-206ENST00000559389 NGLY1Q96IV0 654 aa29.65■■■□□ 2.34
SNX1-206ENST00000559389 AFF2P51816 1311 aa29.65■■■□□ 2.34
SNX1-206ENST00000559389 AATKQ6ZMQ8 1374 aa29.64■■■□□ 2.34
SNX1-206ENST00000559389 FNBP4Q8N3X1 1017 aaPredicted RBP29.64■■■□□ 2.34
SNX1-206ENST00000559389 CHRNA2Q15822 529 aa29.63■■■□□ 2.33
SNX1-206ENST00000559389 BCL9LQ86UU0 1499 aa29.62■■■□□ 2.33
SNX1-206ENST00000559389 CAMTA1Q9Y6Y1 1673 aa29.62■■■□□ 2.33
SNX1-206ENST00000559389 PEAK1Q9H792 1746 aa29.6■■■□□ 2.33
SNX1-206ENST00000559389 PHF23Q9BUL5 403 aaPredicted RBP29.6■■■□□ 2.33
SNX1-206ENST00000559389 MAP3K19Q56UN5 1328 aa29.6■■■□□ 2.33
SNX1-206ENST00000559389 CC2D1BQ5T0F9 858 aaKnown RBP29.59■■■□□ 2.33
SNX1-206ENST00000559389 RTL1A6NKG5 1358 aa29.59■■■□□ 2.33
SNX1-206ENST00000559389 ZBTB7CA1YPR0 619 aa29.58■■■□□ 2.33
SNX1-206ENST00000559389 FBLN1P23142 703 aa29.58■■■□□ 2.33
SNX1-206ENST00000559389 MORC1Q86VD1 984 aa29.58■■■□□ 2.33
SNX1-206ENST00000559389 RGPD5Q99666 1765 aa29.57■■■□□ 2.32
SNX1-206ENST00000559389 COL5A2P05997 1499 aaPredicted RBP29.57■■■□□ 2.32
SNX1-206ENST00000559389 SMG6Q86US8 1419 aaKnown RBP29.57■■■□□ 2.32
SNX1-206ENST00000559389 BTG4Q9NY30 223 aa29.56■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 102.7 ms