RNA–Protein interactions for RNA: ENST00000559373.1

TSPAN3-206, Transcript of tetraspanin 3, humanhuman

TSL 3

Gene TSPAN3, Length 393 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-206ENST00000559373 COL14A1Q05707 1796 aaKnown RBP29.71■■■□□ 2.35
TSPAN3-206ENST00000559373 QRICH2Q9H0J4 1663 aa29.7■■■□□ 2.35
TSPAN3-206ENST00000559373 VPS72Q15906 364 aa29.69■■■□□ 2.34
TSPAN3-206ENST00000559373 NUTM2GQ5VZR2 741 aa29.69■■■□□ 2.34
TSPAN3-206ENST00000559373 SIN3AQ96ST3 1273 aa29.69■■■□□ 2.34
TSPAN3-206ENST00000559373 SEPT12Q8IYM1 358 aa29.68■■■□□ 2.34
TSPAN3-206ENST00000559373 BTG4Q9NY30 223 aa29.68■■■□□ 2.34
TSPAN3-206ENST00000559373 PHRF1Q9P1Y6 1649 aaKnown RBP29.67■■■□□ 2.34
TSPAN3-206ENST00000559373 A0A0G2JS52 829 aa29.64■■■□□ 2.34
TSPAN3-206ENST00000559373 MYT1Q01538 1121 aa29.64■■■□□ 2.34
TSPAN3-206ENST00000559373 L3MBTL2Q969R5 705 aa29.64■■■□□ 2.34
TSPAN3-206ENST00000559373 ACEP12821 1306 aa29.64■■■□□ 2.34
TSPAN3-206ENST00000559373 NEUROD1Q13562 356 aa29.63■■■□□ 2.33
TSPAN3-206ENST00000559373 TRPM1Q7Z4N2 1603 aa29.6■■■□□ 2.33
TSPAN3-206ENST00000559373 FAM98CQ17RN3 349 aaKnown RBP29.6■■■□□ 2.33
TSPAN3-206ENST00000559373 CHRNA2Q15822 529 aa29.59■■■□□ 2.33
TSPAN3-206ENST00000559373 NBPF8Q3BBV2 869 aa29.59■■■□□ 2.33
TSPAN3-206ENST00000559373 CABP2Q9NPB3 220 aa29.59■■■□□ 2.33
TSPAN3-206ENST00000559373 SRPK2P78362 688 aaKnown RBP29.58■■■□□ 2.33
TSPAN3-206ENST00000559373 CENPJQ9HC77 1338 aaPredicted RBP29.58■■■□□ 2.33
TSPAN3-206ENST00000559373 PRDM11Q9NQV5 511 aa29.58■■■□□ 2.33
TSPAN3-206ENST00000559373 CCDC61Q9Y6R9 512 aa29.58■■■□□ 2.33
TSPAN3-206ENST00000559373 ZC3H6P61129 1189 aaKnown RBP29.57■■■□□ 2.32
TSPAN3-206ENST00000559373 POLR3AO14802 1390 aaPredicted RBP29.56■■■□□ 2.32
TSPAN3-206ENST00000559373 ONECUT3O60422 494 aaPredicted RBP29.56■■■□□ 2.32
TSPAN3-206ENST00000559373 KIAA0232Q92628 1395 aa29.55■■■□□ 2.32
TSPAN3-206ENST00000559373 KRT27Q7Z3Y8 459 aa29.55■■■□□ 2.32
TSPAN3-206ENST00000559373 DEFB132Q7Z7B7 95 aa29.55■■■□□ 2.32
TSPAN3-206ENST00000559373 CCDC125Q86Z20 511 aa29.55■■■□□ 2.32
TSPAN3-206ENST00000559373 PPIP5K1Q6PFW1 1433 aa29.54■■■□□ 2.32
TSPAN3-206ENST00000559373 FAM182BQ5T319 152 aa29.53■■■□□ 2.32
TSPAN3-206ENST00000559373 BLMP54132 1417 aaPredicted RBP29.53■■■□□ 2.32
TSPAN3-206ENST00000559373 SRCAPQ6ZRS2 3230 aa29.52■■■□□ 2.32
TSPAN3-206ENST00000559373 PLEKHG3A1L390 1219 aa29.52■■■□□ 2.32
TSPAN3-206ENST00000559373 ABTB2Q8N961 1025 aa29.51■■■□□ 2.31
TSPAN3-206ENST00000559373 STRN4Q9NRL3 753 aa29.51■■■□□ 2.31
TSPAN3-206ENST00000559373 ZRANB1Q9UGI0 708 aa29.5■■■□□ 2.31
TSPAN3-206ENST00000559373 SPATA31A5Q5VU36 1347 aa29.49■■■□□ 2.31
TSPAN3-206ENST00000559373 SPATA31A7Q8IWB4 1347 aa29.49■■■□□ 2.31
TSPAN3-206ENST00000559373 NRKQ7Z2Y5 1582 aa29.49■■■□□ 2.31
TSPAN3-206ENST00000559373 THSD7AQ9UPZ6 1657 aa29.47■■■□□ 2.31
TSPAN3-206ENST00000559373 SF3B2Q13435 895 aaKnown RBP29.46■■■□□ 2.31
TSPAN3-206ENST00000559373 CABP1Q9NZU7 370 aa29.45■■■□□ 2.31
TSPAN3-206ENST00000559373 USP35Q9P2H5 1018 aa29.45■■■□□ 2.31
TSPAN3-206ENST00000559373 ROCK2O75116 1388 aaKnown RBP29.42■■■□□ 2.3
TSPAN3-206ENST00000559373 CAMTA1Q9Y6Y1 1673 aa29.42■■■□□ 2.3
TSPAN3-206ENST00000559373 RGPD1P0DJD0 1748 aa29.41■■■□□ 2.3
TSPAN3-206ENST00000559373 AKAP12Q02952 1782 aa29.41■■■□□ 2.3
TSPAN3-206ENST00000559373 SPATA31A1Q5TZJ5 1347 aa29.41■■■□□ 2.3
TSPAN3-206ENST00000559373 LMO7Q8WWI1 1683 aa29.4■■■□□ 2.3
TSPAN3-206ENST00000559373 RGPD5Q99666 1765 aa29.4■■■□□ 2.3
TSPAN3-206ENST00000559373 ZBTB7CA1YPR0 619 aa29.4■■■□□ 2.3
TSPAN3-206ENST00000559373 EVA1CP58658 441 aa29.4■■■□□ 2.3
TSPAN3-206ENST00000559373 PIK3C2AO00443 1686 aa29.38■■■□□ 2.29
TSPAN3-206ENST00000559373 TNS1Q9HBL0 1735 aaKnown RBP29.37■■■□□ 2.29
TSPAN3-206ENST00000559373 NLRP13Q86W25 1043 aa29.37■■■□□ 2.29
TSPAN3-206ENST00000559373 USP19O94966 1318 aa29.37■■■□□ 2.29
TSPAN3-206ENST00000559373 LARP1Q6PKG0 1096 aaKnown RBP29.36■■■□□ 2.29
TSPAN3-206ENST00000559373 EVC2Q86UK5 1308 aa29.36■■■□□ 2.29
TSPAN3-206ENST00000559373 USP6P35125 1406 aa29.36■■■□□ 2.29
TSPAN3-206ENST00000559373 GCP02774 474 aa29.35■■■□□ 2.29
TSPAN3-206ENST00000559373 SSH2Q76I76 1423 aa29.35■■■□□ 2.29
TSPAN3-206ENST00000559373 NLRP6P59044 892 aa29.33■■■□□ 2.29
TSPAN3-206ENST00000559373 EN1Q05925 392 aaPredicted RBP29.31■■■□□ 2.28
TSPAN3-206ENST00000559373 CPDO75976 1380 aa29.3■■■□□ 2.28
TSPAN3-206ENST00000559373 BAG6P46379 1132 aa29.3■■■□□ 2.28
TSPAN3-206ENST00000559373 COL18A1P39060 1754 aa29.29■■■□□ 2.28
TSPAN3-206ENST00000559373 PSDA5PKW4 1024 aaPredicted RBP29.27■■■□□ 2.28
TSPAN3-206ENST00000559373 COL5A2P05997 1499 aaPredicted RBP29.26■■■□□ 2.27
TSPAN3-206ENST00000559373 SOX12O15370 315 aa29.26■■■□□ 2.27
TSPAN3-206ENST00000559373 TRIM37O94972 964 aa29.26■■■□□ 2.27
TSPAN3-206ENST00000559373 SLIT3O75094 1523 aa29.25■■■□□ 2.27
TSPAN3-206ENST00000559373 MON2Q7Z3U7 1717 aa29.25■■■□□ 2.27
TSPAN3-206ENST00000559373 BRD4O60885 1362 aaPredicted RBP29.24■■■□□ 2.27
TSPAN3-206ENST00000559373 TCP11L2Q8N4U5 519 aa29.23■■■□□ 2.27
TSPAN3-206ENST00000559373 CARD11Q9BXL7 1154 aa29.23■■■□□ 2.27
TSPAN3-206ENST00000559373 PARP4Q9UKK3 1724 aaKnown RBP29.23■■■□□ 2.27
TSPAN3-206ENST00000559373 BARGINQ6ZT62 677 aa29.22■■■□□ 2.27
TSPAN3-206ENST00000559373 TTC21BQ7Z4L5 1316 aa29.21■■■□□ 2.27
TSPAN3-206ENST00000559373 PDE3BQ13370 1112 aa29.21■■■□□ 2.27
TSPAN3-206ENST00000559373 WNK3Q9BYP7 1800 aa29.21■■■□□ 2.27
TSPAN3-206ENST00000559373 EZH2Q15910 746 aaKnown RBP29.2■■■□□ 2.26
TSPAN3-206ENST00000559373 TONSLQ96HA7 1378 aa29.2■■■□□ 2.26
TSPAN3-206ENST00000559373 FAM196AQ6ZSG2 479 aa29.19■■■□□ 2.26
TSPAN3-206ENST00000559373 SBF2Q86WG5 1849 aa29.19■■■□□ 2.26
TSPAN3-206ENST00000559373 KTN1Q86UP2 1357 aaKnown RBP29.18■■■□□ 2.26
TSPAN3-206ENST00000559373 AXIN2Q9Y2T1 843 aa29.18■■■□□ 2.26
TSPAN3-206ENST00000559373 ZNF692Q9BU19 519 aaPredicted RBP29.17■■■□□ 2.26
TSPAN3-206ENST00000559373 CRB1P82279 1406 aa29.16■■■□□ 2.26
TSPAN3-206ENST00000559373 AATKQ6ZMQ8 1374 aa29.15■■■□□ 2.26
TSPAN3-206ENST00000559373 CPSF1Q10570 1443 aaKnown RBP29.15■■■□□ 2.26
TSPAN3-206ENST00000559373 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.15■■■□□ 2.26
TSPAN3-206ENST00000559373 LTN1O94822 1766 aa29.15■■■□□ 2.26
TSPAN3-206ENST00000559373 LRRC37A3O60309 1634 aa29.14■■■□□ 2.26
TSPAN3-206ENST00000559373 APBA3O96018 575 aa29.14■■■□□ 2.26
TSPAN3-206ENST00000559373 TOM1L2Q6ZVM7 507 aa29.13■■■□□ 2.25
TSPAN3-206ENST00000559373 TMC1Q8TDI8 760 aa29.13■■■□□ 2.25
TSPAN3-206ENST00000559373 THRAP3Q9Y2W1 955 aaKnown RBP29.12■■■□□ 2.25
TSPAN3-206ENST00000559373 R3HDM1Q15032 1099 aaKnown RBP29.11■■■□□ 2.25
TSPAN3-206ENST00000559373 RREB1Q92766 1687 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms