RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 VPS37CA5D8V6 355 aaPredicted RBP8.63□□□□□ -1.03
USP3-210ENST00000559192 TMPOP42166 694 aaKnown RBP8.63□□□□□ -1.03
USP3-210ENST00000559192 LTV1Q96GA3 475 aaPredicted RBP8.63□□□□□ -1.03
USP3-210ENST00000559192 TESK2Q96S53 571 aa8.63□□□□□ -1.03
USP3-210ENST00000559192 ASXL1Q8IXJ9 1541 aa8.63□□□□□ -1.03
USP3-210ENST00000559192 MAP7D2Q96T17 732 aa8.63□□□□□ -1.03
USP3-210ENST00000559192 THUMPD2Q9BTF0 503 aaKnown RBP8.63□□□□□ -1.03
USP3-210ENST00000559192 IFT140Q96RY7 1462 aa8.63□□□□□ -1.03
USP3-210ENST00000559192 BLMP54132 1417 aaPredicted RBP8.63□□□□□ -1.03
USP3-210ENST00000559192 ITSN2Q9NZM3 1697 aa8.63□□□□□ -1.03
USP3-210ENST00000559192 PATL2C9JE40 543 aaKnown RBP8.62□□□□□ -1.03
USP3-210ENST00000559192 SPC24Q8NBT2 197 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 RBM27Q9P2N5 1060 aaKnown RBP8.62□□□□□ -1.03
USP3-210ENST00000559192 FBXW7Q969H0 707 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 GPATCH3Q96I76 525 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 DMRT2Q9Y5R5 561 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 SCAF11Q99590 1463 aaKnown RBP8.62□□□□□ -1.03
USP3-210ENST00000559192 FAM135AQ9P2D6 1515 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 SMARCA5O60264 1052 aaPredicted RBP8.62□□□□□ -1.03
USP3-210ENST00000559192 CT47B1P0C2W7 299 aaPredicted RBP8.62□□□□□ -1.03
USP3-210ENST00000559192 IFT57Q9NWB7 429 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 SMC3Q9UQE7 1217 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 ATP6V1DQ9Y5K8 247 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 KDM5CP41229 1560 aa8.62□□□□□ -1.03
USP3-210ENST00000559192 CCDC9Q9Y3X0 531 aaKnown RBP8.61□□□□□ -1.03
USP3-210ENST00000559192 MAP4K4O95819 1239 aaPredicted RBP8.61□□□□□ -1.03
USP3-210ENST00000559192 TBC1D9Q6ZT07 1266 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 DIAPH3Q9NSV4 1193 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 COL17A1Q9UMD9 1497 aaPredicted RBP8.61□□□□□ -1.03
USP3-210ENST00000559192 ADGRF5Q8IZF2 1346 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 MBD3O95983 291 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 FOSBP53539 338 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 FKBP5Q13451 457 aaPredicted RBP8.61□□□□□ -1.03
USP3-210ENST00000559192 DNAJC5Q9H3Z4 198 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 CWC22Q9HCG8 908 aaKnown RBP8.61□□□□□ -1.03
USP3-210ENST00000559192 UHRF1BP1Q6BDS2 1440 aa8.61□□□□□ -1.03
USP3-210ENST00000559192 HTATSF1O43719 755 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 DNAJC5BQ9UF47 199 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 H3BQV1 296 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 FIBPO43427 364 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 AMPHP49418 695 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 NOM1Q5C9Z4 860 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 IFFO2Q5TF58 517 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 MTERF4Q7Z6M4 381 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 RBM42Q9BTD8 480 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 ARHGEF12Q9NZN5 1544 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 SAMD9Q5K651 1589 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 ERC2O15083 957 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 GOLGA6L19H0YKK7 550 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 EIF2S2P20042 333 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 GNL2Q13823 731 aaKnown RBP8.6□□□□□ -1.03
USP3-210ENST00000559192 TEX35Q5T0J7 233 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 TSPYL4Q9UJ04 414 aa8.6□□□□□ -1.03
USP3-210ENST00000559192 GRIN2AQ12879 1464 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 BAG4O95429 457 aaKnown RBP8.59□□□□□ -1.03
USP3-210ENST00000559192 PRAM1Q96QH2 718 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 ZSCAN23Q3MJ62 389 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 TAF7LQ5H9L4 462 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 PDCL3Q9H2J4 239 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 PDE4CQ08493 712 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 BICD2Q8TD16 824 aa8.59□□□□□ -1.03
USP3-210ENST00000559192 ZNF608Q9ULD9 1512 aaPredicted RBP8.58□□□□□ -1.04
USP3-210ENST00000559192 GPS2Q13227 327 aa8.58□□□□□ -1.04
USP3-210ENST00000559192 NUCB1Q02818 461 aa8.58□□□□□ -1.04
USP3-210ENST00000559192 CABP1Q9NZU7 370 aa8.58□□□□□ -1.04
USP3-210ENST00000559192 BECN2A8MW95 431 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 A0A0G2JS52 829 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 KIF21AQ7Z4S6 1674 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 CCDC66A2RUB6 948 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 TPM4P67936 248 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 CBX1P83916 185 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 KIAA0556O60303 1618 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 SLC4A2P04920 1241 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 BCORL1Q5H9F3 1711 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 TPD52L1Q16890 204 aaPredicted RBP8.57□□□□□ -1.04
USP3-210ENST00000559192 FAM184AQ8NB25 1140 aa8.57□□□□□ -1.04
USP3-210ENST00000559192 HDAC1Q13547 482 aaPredicted RBP8.56□□□□□ -1.04
USP3-210ENST00000559192 DCTN1Q14203 1278 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 SASS6Q6UVJ0 657 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 EIF2AK4Q9P2K8 1649 aaKnown RBP8.56□□□□□ -1.04
USP3-210ENST00000559192 A2MP01023 1474 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 GAS2L2Q8NHY3 880 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 CDK19Q9BWU1 502 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 GDPD2Q9HCC8 539 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 KDM5BQ9UGL1 1544 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 BMP2KLQ5H9B9 411 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 KLHL40Q2TBA0 621 aa8.56□□□□□ -1.04
USP3-210ENST00000559192 NGDNQ8NEJ9 315 aaKnown RBP8.56□□□□□ -1.04
USP3-210ENST00000559192 ZKSCAN1P17029 563 aaPredicted RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 RAB3GAP1Q15042 981 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 RRS1Q15050 365 aaKnown RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 CARD14Q9BXL6 1004 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 ZHX1Q9UKY1 873 aaPredicted RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 PIK3C2GO75747 1445 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 LETM1O95202 739 aaPredicted RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 SYCP2Q9BX26 1530 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 IFIT2P09913 472 aaKnown RBP8.55□□□□□ -1.04
USP3-210ENST00000559192 TRIM5Q9C035 493 aa8.55□□□□□ -1.04
USP3-210ENST00000559192 MCM2P49736 904 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms