RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 CABP1Q9NZU7 370 aa17.86■□□□□ 0.45
SMAD3-208ENST00000558827 PLEKHG3A1L390 1219 aa17.85■□□□□ 0.45
SMAD3-208ENST00000558827 ITSN1Q15811 1721 aa17.85■□□□□ 0.45
SMAD3-208ENST00000558827 PPIP5K1Q6PFW1 1433 aa17.85■□□□□ 0.45
SMAD3-208ENST00000558827 CARD11Q9BXL7 1154 aa17.85■□□□□ 0.45
SMAD3-208ENST00000558827 ALS2Q96Q42 1657 aa17.84■□□□□ 0.45
SMAD3-208ENST00000558827 CDK12Q9NYV4 1490 aaPredicted RBP17.84■□□□□ 0.45
SMAD3-208ENST00000558827 ABCA3Q99758 1704 aa17.84■□□□□ 0.45
SMAD3-208ENST00000558827 SLIT2O94813 1529 aa17.83■□□□□ 0.45
SMAD3-208ENST00000558827 ZC3H6P61129 1189 aaKnown RBP17.83■□□□□ 0.44
SMAD3-208ENST00000558827 CHRNA2Q15822 529 aa17.83■□□□□ 0.44
SMAD3-208ENST00000558827 BTG4Q9NY30 223 aa17.83■□□□□ 0.44
SMAD3-208ENST00000558827 EVC2Q86UK5 1308 aa17.82■□□□□ 0.44
SMAD3-208ENST00000558827 ABTB2Q8N961 1025 aa17.82■□□□□ 0.44
SMAD3-208ENST00000558827 POLR3AO14802 1390 aaPredicted RBP17.81■□□□□ 0.44
SMAD3-208ENST00000558827 TOPAZ1Q8N9V7 1692 aa17.81■□□□□ 0.44
SMAD3-208ENST00000558827 PRDM11Q9NQV5 511 aa17.81■□□□□ 0.44
SMAD3-208ENST00000558827 ZBTB7CA1YPR0 619 aa17.8■□□□□ 0.44
SMAD3-208ENST00000558827 RALGAPBQ86X10 1494 aa17.8■□□□□ 0.44
SMAD3-208ENST00000558827 PLCH1Q4KWH8 1693 aa17.8■□□□□ 0.44
SMAD3-208ENST00000558827 A0A0G2JS52 829 aa17.79■□□□□ 0.44
SMAD3-208ENST00000558827 MYT1Q01538 1121 aa17.79■□□□□ 0.44
SMAD3-208ENST00000558827 VPS72Q15906 364 aa17.79■□□□□ 0.44
SMAD3-208ENST00000558827 GLI3P10071 1580 aa17.79■□□□□ 0.44
SMAD3-208ENST00000558827 KIAA0232Q92628 1395 aa17.78■□□□□ 0.44
SMAD3-208ENST00000558827 SEPT12Q8IYM1 358 aa17.77■□□□□ 0.44
SMAD3-208ENST00000558827 STRN4Q9NRL3 753 aa17.77■□□□□ 0.44
SMAD3-208ENST00000558827 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.75■□□□□ 0.43
SMAD3-208ENST00000558827 FAM98CQ17RN3 349 aaKnown RBP17.75■□□□□ 0.43
SMAD3-208ENST00000558827 SOX12O15370 315 aa17.74■□□□□ 0.43
SMAD3-208ENST00000558827 NLRP6P59044 892 aa17.74■□□□□ 0.43
SMAD3-208ENST00000558827 TMC1Q8TDI8 760 aa17.74■□□□□ 0.43
SMAD3-208ENST00000558827 CRYBG1Q9Y4K1 1723 aa17.74■□□□□ 0.43
SMAD3-208ENST00000558827 ATAD2Q6PL18 1390 aa17.74■□□□□ 0.43
SMAD3-208ENST00000558827 NLRP13Q86W25 1043 aa17.73■□□□□ 0.43
SMAD3-208ENST00000558827 NWD2Q9ULI1 1742 aa17.72■□□□□ 0.43
SMAD3-208ENST00000558827 COL14A1Q05707 1796 aaKnown RBP17.72■□□□□ 0.43
SMAD3-208ENST00000558827 USP35Q9P2H5 1018 aa17.72■□□□□ 0.43
SMAD3-208ENST00000558827 PHRF1Q9P1Y6 1649 aaKnown RBP17.72■□□□□ 0.43
SMAD3-208ENST00000558827 USP6P35125 1406 aa17.72■□□□□ 0.43
SMAD3-208ENST00000558827 BRWD3Q6RI45 1802 aa17.71■□□□□ 0.43
SMAD3-208ENST00000558827 ST20-MTHFSA0A0A6YYL1 179 aa17.71■□□□□ 0.43
SMAD3-208ENST00000558827 GCP02774 474 aa17.71■□□□□ 0.43
SMAD3-208ENST00000558827 EVA1CP58658 441 aa17.71■□□□□ 0.43
SMAD3-208ENST00000558827 NRAPQ86VF7 1730 aa17.7■□□□□ 0.42
SMAD3-208ENST00000558827 FAM182BQ5T319 152 aa17.7■□□□□ 0.42
SMAD3-208ENST00000558827 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.7■□□□□ 0.42
SMAD3-208ENST00000558827 SLC12A5Q9H2X9 1139 aa17.7■□□□□ 0.42
SMAD3-208ENST00000558827 ZRANB1Q9UGI0 708 aa17.7■□□□□ 0.42
SMAD3-208ENST00000558827 TTC21BQ7Z4L5 1316 aa17.7■□□□□ 0.42
SMAD3-208ENST00000558827 SPATA31A5Q5VU36 1347 aa17.69■□□□□ 0.42
SMAD3-208ENST00000558827 SPATA31A7Q8IWB4 1347 aa17.69■□□□□ 0.42
SMAD3-208ENST00000558827 USP19O94966 1318 aa17.68■□□□□ 0.42
SMAD3-208ENST00000558827 KTN1Q86UP2 1357 aaKnown RBP17.67■□□□□ 0.42
SMAD3-208ENST00000558827 LARP1Q6PKG0 1096 aaKnown RBP17.67■□□□□ 0.42
SMAD3-208ENST00000558827 KRT27Q7Z3Y8 459 aa17.67■□□□□ 0.42
SMAD3-208ENST00000558827 ZNF692Q9BU19 519 aaPredicted RBP17.67■□□□□ 0.42
SMAD3-208ENST00000558827 ONECUT3O60422 494 aaPredicted RBP17.66■□□□□ 0.42
SMAD3-208ENST00000558827 NRKQ7Z2Y5 1582 aa17.66■□□□□ 0.42
SMAD3-208ENST00000558827 SSH2Q76I76 1423 aa17.65■□□□□ 0.42
SMAD3-208ENST00000558827 CAMTA1Q9Y6Y1 1673 aa17.64■□□□□ 0.42
SMAD3-208ENST00000558827 NME9Q86XW9 330 aa17.64■□□□□ 0.41
SMAD3-208ENST00000558827 CCER1Q8TC90 406 aaPredicted RBP17.64■□□□□ 0.41
SMAD3-208ENST00000558827 TESK2Q96S53 571 aa17.64■□□□□ 0.41
SMAD3-208ENST00000558827 SPATA31A1Q5TZJ5 1347 aa17.64■□□□□ 0.41
SMAD3-208ENST00000558827 DEFB132Q7Z7B7 95 aa17.63■□□□□ 0.41
SMAD3-208ENST00000558827 PIK3C2AO00443 1686 aa17.63■□□□□ 0.41
SMAD3-208ENST00000558827 SBNO2Q9Y2G9 1366 aa17.63■□□□□ 0.41
SMAD3-208ENST00000558827 AKAP12Q02952 1782 aa17.63■□□□□ 0.41
SMAD3-208ENST00000558827 HDGFL2Q7Z4V5 671 aaPredicted RBP17.62■□□□□ 0.41
SMAD3-208ENST00000558827 BRD4O60885 1362 aaPredicted RBP17.62■□□□□ 0.41
SMAD3-208ENST00000558827 CPSF1Q10570 1443 aaKnown RBP17.62■□□□□ 0.41
SMAD3-208ENST00000558827 EP400Q96L91 3159 aa17.62■□□□□ 0.41
SMAD3-208ENST00000558827 CPDO75976 1380 aa17.61■□□□□ 0.41
SMAD3-208ENST00000558827 AXIN2Q9Y2T1 843 aa17.6■□□□□ 0.41
SMAD3-208ENST00000558827 USP47Q96K76 1375 aa17.6■□□□□ 0.41
SMAD3-208ENST00000558827 CD163L1Q9NR16 1453 aa17.59■□□□□ 0.41
SMAD3-208ENST00000558827 TTC21AQ8NDW8 1320 aa17.59■□□□□ 0.41
SMAD3-208ENST00000558827 SF3B2Q13435 895 aaKnown RBP17.58■□□□□ 0.4
SMAD3-208ENST00000558827 SLIT3O75094 1523 aa17.57■□□□□ 0.4
SMAD3-208ENST00000558827 ARHGEF25Q86VW2 580 aa17.57■□□□□ 0.4
SMAD3-208ENST00000558827 TCP11L2Q8N4U5 519 aa17.57■□□□□ 0.4
SMAD3-208ENST00000558827 TERF2IPQ9NYB0 399 aa17.57■□□□□ 0.4
SMAD3-208ENST00000558827 LMO7Q8WWI1 1683 aa17.57■□□□□ 0.4
SMAD3-208ENST00000558827 A0A1W2PP64 1363 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 MON2Q7Z3U7 1717 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 CSB-PGBD3P0DP91 1061 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 TOM1L2Q6ZVM7 507 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 CCDC125Q86Z20 511 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 KCNH5Q8NCM2 988 aa17.56■□□□□ 0.4
SMAD3-208ENST00000558827 COL5A2P05997 1499 aaPredicted RBP17.56■□□□□ 0.4
SMAD3-208ENST00000558827 BLMP54132 1417 aaPredicted RBP17.55■□□□□ 0.4
SMAD3-208ENST00000558827 AATKQ6ZMQ8 1374 aa17.55■□□□□ 0.4
SMAD3-208ENST00000558827 TMF1P82094 1093 aa17.55■□□□□ 0.4
SMAD3-208ENST00000558827 RGPD5Q99666 1765 aa17.54■□□□□ 0.4
SMAD3-208ENST00000558827 FBLN1P23142 703 aa17.54■□□□□ 0.4
SMAD3-208ENST00000558827 PDE3BQ13370 1112 aa17.54■□□□□ 0.4
SMAD3-208ENST00000558827 POLR3GLQ9BT43 218 aa17.54■□□□□ 0.4
SMAD3-208ENST00000558827 THSD7AQ9UPZ6 1657 aa17.53■□□□□ 0.4
SMAD3-208ENST00000558827 CLSPNQ9HAW4 1339 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms