RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 SMARCA4P51532 1647 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 SYCE3A1L190 88 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 ATF7IPQ6VMQ6 1270 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 PRDM10Q9NQV6 1147 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 UBTFL1P0CB47 393 aaPredicted RBP20.86■□□□□ 0.93
SYNE3-204ENST00000555759 CADPSQ9ULU8 1353 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 HFM1A2PYH4 1435 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 ERICH4A6NGS2 130 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 ANKRD50Q9ULJ7 1429 aa20.86■□□□□ 0.93
SYNE3-204ENST00000555759 UBXN4Q92575 508 aa20.85■□□□□ 0.93
SYNE3-204ENST00000555759 PRIMPOLQ96LW4 560 aa20.85■□□□□ 0.93
SYNE3-204ENST00000555759 TMCO3Q6UWJ1 677 aa20.85■□□□□ 0.93
SYNE3-204ENST00000555759 NOB1Q9ULX3 412 aaKnown RBP20.85■□□□□ 0.93
SYNE3-204ENST00000555759 NUP62CLQ9H1M0 184 aa20.85■□□□□ 0.93
SYNE3-204ENST00000555759 XPCQ01831 940 aaPredicted RBP20.84■□□□□ 0.93
SYNE3-204ENST00000555759 RALYLQ86SE5 291 aaKnown RBP20.84■□□□□ 0.93
SYNE3-204ENST00000555759 MTHFSP49914 203 aa20.84■□□□□ 0.93
SYNE3-204ENST00000555759 NFXL1Q6ZNB6 911 aa20.84■□□□□ 0.93
SYNE3-204ENST00000555759 TBC1D2Q9BYX2 928 aa20.84■□□□□ 0.93
SYNE3-204ENST00000555759 CYP46A1Q9Y6A2 500 aa20.84■□□□□ 0.93
SYNE3-204ENST00000555759 SLFN5Q08AF3 891 aa20.83■□□□□ 0.93
SYNE3-204ENST00000555759 CLASRPQ8N2M8 674 aaKnown RBP20.83■□□□□ 0.93
SYNE3-204ENST00000555759 IGF1RP08069 1367 aa20.83■□□□□ 0.93
SYNE3-204ENST00000555759 C1orf141Q5JVX7 400 aa20.83■□□□□ 0.92
SYNE3-204ENST00000555759 MPNDQ8N594 471 aa20.83■□□□□ 0.92
SYNE3-204ENST00000555759 ZSCAN31Q96LW9 406 aaPredicted RBP20.83■□□□□ 0.92
SYNE3-204ENST00000555759 TSPYL4Q9UJ04 414 aa20.83■□□□□ 0.92
SYNE3-204ENST00000555759 SERPINC1P01008 464 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 NBPF8Q3BBV2 869 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 JMYQ8N9B5 988 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 CEP57L1Q8IYX8 460 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 ERICH2A1L162 156 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 FMNL2Q96PY5 1086 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 FOSBP53539 338 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 DACH1Q9UI36 760 aa20.82■□□□□ 0.92
SYNE3-204ENST00000555759 DHX16O60231 1041 aaKnown RBP20.81■□□□□ 0.92
SYNE3-204ENST00000555759 EIF2S2P20042 333 aaKnown RBP20.81■□□□□ 0.92
SYNE3-204ENST00000555759 ZNF428Q96B54 188 aa20.81■□□□□ 0.92
SYNE3-204ENST00000555759 CCDC9Q9Y3X0 531 aaKnown RBP20.81■□□□□ 0.92
SYNE3-204ENST00000555759 NUTM2DQ5VT03 806 aaPredicted RBP20.81■□□□□ 0.92
SYNE3-204ENST00000555759 GBP3Q9H0R5 595 aa20.81■□□□□ 0.92
SYNE3-204ENST00000555759 STK38Q15208 465 aa20.81■□□□□ 0.92
SYNE3-204ENST00000555759 LTV1Q96GA3 475 aaPredicted RBP20.81■□□□□ 0.92
SYNE3-204ENST00000555759 SRCIN1Q9C0H9 1055 aa20.81■□□□□ 0.92
SYNE3-204ENST00000555759 PTPN14Q15678 1187 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 HSP90AB3PQ58FF7 597 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 ARAP1Q96P48 1450 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 MLECQ14165 292 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 MAP3K11Q16584 847 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 TNPO1Q92973 898 aaKnown RBP20.8■□□□□ 0.92
SYNE3-204ENST00000555759 CCDC183Q5T5S1 534 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.8■□□□□ 0.92
SYNE3-204ENST00000555759 GOLGA6L7A0A1B0GV03 622 aa20.8■□□□□ 0.92
SYNE3-204ENST00000555759 FILIP1Q7Z7B0 1213 aa20.79■□□□□ 0.92
SYNE3-204ENST00000555759 KIF18AQ8NI77 898 aa20.79■□□□□ 0.92
SYNE3-204ENST00000555759 GOLGA6L10A6NI86 522 aa20.79■□□□□ 0.92
SYNE3-204ENST00000555759 TRHP20396 242 aaPredicted RBP20.79■□□□□ 0.92
SYNE3-204ENST00000555759 XBP1P17861 261 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 FSD1Q9BTV5 496 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 CFAP45Q9UL16 551 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 TTLL5Q6EMB2 1281 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 PPFIBP1Q86W92 1011 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 PLEKHH1Q9ULM0 1364 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 GNAI2P04899 355 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 LARP1BQ659C4 914 aaKnown RBP20.78■□□□□ 0.92
SYNE3-204ENST00000555759 BRMS1Q9HCU9 246 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 PPP6R1Q9UPN7 881 aa20.78■□□□□ 0.92
SYNE3-204ENST00000555759 KIAA1107Q9UPP5 1409 aa20.77■□□□□ 0.92
SYNE3-204ENST00000555759 TWISTNBQ3B726 338 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-204ENST00000555759 MINK1Q8N4C8 1332 aaPredicted RBP20.77■□□□□ 0.92
SYNE3-204ENST00000555759 IQCEQ6IPM2 695 aa20.77■□□□□ 0.92
SYNE3-204ENST00000555759 SPATA32Q96LK8 384 aa20.77■□□□□ 0.92
SYNE3-204ENST00000555759 ATAD2BQ9ULI0 1458 aa20.77■□□□□ 0.92
SYNE3-204ENST00000555759 NEMFO60524 1076 aa20.77■□□□□ 0.91
SYNE3-204ENST00000555759 SURF6O75683 361 aaKnown RBP20.77■□□□□ 0.91
SYNE3-204ENST00000555759 PPP4R3BQ5MIZ7 849 aa20.77■□□□□ 0.91
SYNE3-204ENST00000555759 ERC1Q8IUD2 1116 aa20.76■□□□□ 0.91
SYNE3-204ENST00000555759 KLHL40Q2TBA0 621 aa20.76■□□□□ 0.91
SYNE3-204ENST00000555759 SMTNL1A8MU46 457 aa20.76■□□□□ 0.91
SYNE3-204ENST00000555759 UVSSAQ2YD98 709 aa20.76■□□□□ 0.91
SYNE3-204ENST00000555759 FAM107BQ9H098 131 aa20.75■□□□□ 0.91
SYNE3-204ENST00000555759 C1orf115Q9H7X2 142 aa20.75■□□□□ 0.91
SYNE3-204ENST00000555759 ZHX1Q9UKY1 873 aaPredicted RBP20.75■□□□□ 0.91
SYNE3-204ENST00000555759 TXLNBQ8N3L3 684 aa20.75■□□□□ 0.91
SYNE3-204ENST00000555759 ZNHIT6Q9NWK9 470 aaKnown RBP20.75■□□□□ 0.91
SYNE3-204ENST00000555759 LRRCC1Q9C099 1032 aa20.75■□□□□ 0.91
SYNE3-204ENST00000555759 DHX29Q7Z478 1369 aaKnown RBP20.75■□□□□ 0.91
SYNE3-204ENST00000555759 OFD1O75665 1012 aa20.74■□□□□ 0.91
SYNE3-204ENST00000555759 UPF3BQ9BZI7 483 aaKnown RBP20.74■□□□□ 0.91
SYNE3-204ENST00000555759 HMOX1P09601 288 aa20.74■□□□□ 0.91
SYNE3-204ENST00000555759 NBPF1Q3BBV0 1214 aa20.74■□□□□ 0.91
SYNE3-204ENST00000555759 CCT4P50991 539 aaKnown RBP20.73■□□□□ 0.91
SYNE3-204ENST00000555759 VPS53Q5VIR6 699 aa20.73■□□□□ 0.91
SYNE3-204ENST00000555759 CCDC30Q5VVM6 783 aa20.73■□□□□ 0.91
SYNE3-204ENST00000555759 CCDC102AQ96A19 550 aa20.73■□□□□ 0.91
SYNE3-204ENST00000555759 NECTIN2Q92692 538 aa20.73■□□□□ 0.91
SYNE3-204ENST00000555759 XRCC6P12956 609 aaKnown RBP eCLIP20.73■□□□□ 0.91
SYNE3-204ENST00000555759 ME1P48163 572 aa20.73■□□□□ 0.91
SYNE3-204ENST00000555759 AMOTL1Q8IY63 956 aa20.72■□□□□ 0.91
SYNE3-204ENST00000555759 ERLIN2O94905 339 aa20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms