RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 NCKAP5LQ9HCH0 1330 aa11.94□□□□□ -0.5
TDP1-210ENST00000554976 USP6P35125 1406 aa11.93□□□□□ -0.5
TDP1-210ENST00000554976 PLEKHG3A1L390 1219 aa11.92□□□□□ -0.5
TDP1-210ENST00000554976 ERICH6Q7L0X2 663 aa11.92□□□□□ -0.5
TDP1-210ENST00000554976 AATKQ6ZMQ8 1374 aa11.92□□□□□ -0.5
TDP1-210ENST00000554976 HDGFL2Q7Z4V5 671 aaPredicted RBP11.92□□□□□ -0.5
TDP1-210ENST00000554976 CDK12Q9NYV4 1490 aaPredicted RBP11.92□□□□□ -0.5
TDP1-210ENST00000554976 CCDC61Q9Y6R9 512 aa11.92□□□□□ -0.5
TDP1-210ENST00000554976 PLPPR3Q6T4P5 718 aa11.91□□□□□ -0.5
TDP1-210ENST00000554976 TRPM3Q9HCF6 1732 aaPredicted RBP11.91□□□□□ -0.5
TDP1-210ENST00000554976 PDE3BQ13370 1112 aa11.91□□□□□ -0.5
TDP1-210ENST00000554976 ANKLE2Q86XL3 938 aa11.9□□□□□ -0.5
TDP1-210ENST00000554976 KCNA6P17658 529 aa11.9□□□□□ -0.5
TDP1-210ENST00000554976 MTHFSP49914 203 aa11.9□□□□□ -0.5
TDP1-210ENST00000554976 GGNBP2Q9H3C7 697 aa11.9□□□□□ -0.5
TDP1-210ENST00000554976 ADGRL3Q9HAR2 1447 aa11.9□□□□□ -0.5
TDP1-210ENST00000554976 PHF23Q9BUL5 403 aaPredicted RBP11.89□□□□□ -0.51
TDP1-210ENST00000554976 PHRF1Q9P1Y6 1649 aaKnown RBP11.89□□□□□ -0.51
TDP1-210ENST00000554976 TRMT2AQ8IZ69 625 aaKnown RBP11.89□□□□□ -0.51
TDP1-210ENST00000554976 BCANQ96GW7 911 aa11.89□□□□□ -0.51
TDP1-210ENST00000554976 USP31Q70CQ4 1352 aa11.88□□□□□ -0.51
TDP1-210ENST00000554976 LMTK3Q96Q04 1460 aa11.88□□□□□ -0.51
TDP1-210ENST00000554976 DLG5Q8TDM6 1919 aa11.88□□□□□ -0.51
TDP1-210ENST00000554976 WDR43Q15061 677 aaKnown RBP eCLIP11.88□□□□□ -0.51
TDP1-210ENST00000554976 KIF1AQ12756 1690 aa11.88□□□□□ -0.51
TDP1-210ENST00000554976 SENP3-EIF4A1A0A087X0R7 540 aa11.87□□□□□ -0.51
TDP1-210ENST00000554976 NCBP3Q53F19 620 aaKnown RBP11.87□□□□□ -0.51
TDP1-210ENST00000554976 FKBP8Q14318 412 aa11.86□□□□□ -0.51
TDP1-210ENST00000554976 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
TDP1-210ENST00000554976 ACEP12821 1306 aa11.86□□□□□ -0.51
TDP1-210ENST00000554976 PLEKHF1Q96S99 279 aa11.86□□□□□ -0.51
TDP1-210ENST00000554976 CDCA7LQ96GN5 454 aa11.86□□□□□ -0.51
TDP1-210ENST00000554976 LTN1O94822 1766 aa11.86□□□□□ -0.51
TDP1-210ENST00000554976 NME9Q86XW9 330 aa11.85□□□□□ -0.51
TDP1-210ENST00000554976 TNNT2P45379 298 aaPredicted RBP11.85□□□□□ -0.51
TDP1-210ENST00000554976 POLKQ9UBT6 870 aa11.85□□□□□ -0.51
TDP1-210ENST00000554976 CRYBG1Q9Y4K1 1723 aa11.85□□□□□ -0.51
TDP1-210ENST00000554976 TTC21BQ7Z4L5 1316 aa11.85□□□□□ -0.51
TDP1-210ENST00000554976 ALS2Q96Q42 1657 aa11.85□□□□□ -0.51
TDP1-210ENST00000554976 ZRANB1Q9UGI0 708 aa11.84□□□□□ -0.51
TDP1-210ENST00000554976 ERICH6BQ5W0A0 696 aa11.84□□□□□ -0.51
TDP1-210ENST00000554976 CCDC146Q8IYE0 955 aa11.84□□□□□ -0.51
TDP1-210ENST00000554976 NGEFQ8N5V2 710 aa11.84□□□□□ -0.51
TDP1-210ENST00000554976 DUSP27Q5VZP5 1158 aa11.83□□□□□ -0.52
TDP1-210ENST00000554976 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.83□□□□□ -0.52
TDP1-210ENST00000554976 NFAT5O94916 1531 aa11.83□□□□□ -0.52
TDP1-210ENST00000554976 KDM4FA0A1W2PPD8 638 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 MST1RQ04912 1400 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 SLFN5Q08AF3 891 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 CCDC27Q2M243 656 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 RUNDC1Q96C34 613 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 DMRT2Q9Y5R5 561 aa11.82□□□□□ -0.52
TDP1-210ENST00000554976 TTC21AQ8NDW8 1320 aa11.81□□□□□ -0.52
TDP1-210ENST00000554976 APAF1O14727 1248 aa11.81□□□□□ -0.52
TDP1-210ENST00000554976 SPINK5Q9NQ38 1064 aaPredicted RBP11.81□□□□□ -0.52
TDP1-210ENST00000554976 CFAP53Q96M91 514 aa11.81□□□□□ -0.52
TDP1-210ENST00000554976 CAMTA1Q9Y6Y1 1673 aa11.81□□□□□ -0.52
TDP1-210ENST00000554976 SLIT3O75094 1523 aa11.81□□□□□ -0.52
TDP1-210ENST00000554976 NCOA3Q9Y6Q9 1424 aa11.8□□□□□ -0.52
TDP1-210ENST00000554976 FBLN1P23142 703 aa11.8□□□□□ -0.52
TDP1-210ENST00000554976 IL13P35225 146 aa11.79□□□□□ -0.52
TDP1-210ENST00000554976 WWC1Q8IX03 1113 aa11.79□□□□□ -0.52
TDP1-210ENST00000554976 DCCP43146 1447 aa11.79□□□□□ -0.52
TDP1-210ENST00000554976 SALL2Q9Y467 1007 aaPredicted RBP11.78□□□□□ -0.52
TDP1-210ENST00000554976 EMILIN1Q9Y6C2 1016 aa11.78□□□□□ -0.52
TDP1-210ENST00000554976 LRRC37A3O60309 1634 aa11.78□□□□□ -0.52
TDP1-210ENST00000554976 GOLGA2Q08379 1002 aa11.77□□□□□ -0.52
TDP1-210ENST00000554976 TCP11L2Q8N4U5 519 aa11.77□□□□□ -0.52
TDP1-210ENST00000554976 ANP32EQ9BTT0 268 aa11.77□□□□□ -0.52
TDP1-210ENST00000554976 RSPH6AQ9H0K4 717 aa11.77□□□□□ -0.52
TDP1-210ENST00000554976 NEFLP07196 543 aa11.77□□□□□ -0.53
TDP1-210ENST00000554976 RRP1P56182 461 aaKnown RBP11.77□□□□□ -0.53
TDP1-210ENST00000554976 COG3Q96JB2 828 aa11.77□□□□□ -0.53
TDP1-210ENST00000554976 RCAN3Q9UKA8 241 aa11.77□□□□□ -0.53
TDP1-210ENST00000554976 DIAPH1O60610 1272 aaKnown RBP11.76□□□□□ -0.53
TDP1-210ENST00000554976 NUTM2FA1L443 756 aa11.76□□□□□ -0.53
TDP1-210ENST00000554976 RGPD2P0DJD1 1756 aa11.76□□□□□ -0.53
TDP1-210ENST00000554976 IRX6P78412 446 aaPredicted RBP11.76□□□□□ -0.53
TDP1-210ENST00000554976 C1orf167Q5SNV9 1468 aa11.75□□□□□ -0.53
TDP1-210ENST00000554976 LMO7Q8WWI1 1683 aa11.75□□□□□ -0.53
TDP1-210ENST00000554976 PMFBP1Q8TBY8 1022 aa11.75□□□□□ -0.53
TDP1-210ENST00000554976 WDR63Q8IWG1 891 aa11.75□□□□□ -0.53
TDP1-210ENST00000554976 TRIM35Q9UPQ4 493 aa11.75□□□□□ -0.53
TDP1-210ENST00000554976 KIF24Q5T7B8 1368 aa11.74□□□□□ -0.53
TDP1-210ENST00000554976 E9PSI1 815 aa11.74□□□□□ -0.53
TDP1-210ENST00000554976 MED1Q15648 1581 aaPredicted RBP11.74□□□□□ -0.53
TDP1-210ENST00000554976 U2AF1L5P0DN76 240 aaPredicted RBP11.73□□□□□ -0.53
TDP1-210ENST00000554976 U2AF1Q01081 240 aaKnown RBP eCLIP11.73□□□□□ -0.53
TDP1-210ENST00000554976 RRS1Q15050 365 aaKnown RBP11.73□□□□□ -0.53
TDP1-210ENST00000554976 SBNO1A3KN83 1393 aa11.73□□□□□ -0.53
TDP1-210ENST00000554976 COL18A1P39060 1754 aa11.73□□□□□ -0.53
TDP1-210ENST00000554976 FCHSD2O94868 740 aa11.73□□□□□ -0.53
TDP1-210ENST00000554976 ABCA3Q99758 1704 aa11.73□□□□□ -0.53
TDP1-210ENST00000554976 VIRMAQ69YN4 1812 aaKnown RBP11.73□□□□□ -0.53
TDP1-210ENST00000554976 RGPD5Q99666 1765 aa11.72□□□□□ -0.53
TDP1-210ENST00000554976 TMPOP42166 694 aaKnown RBP11.72□□□□□ -0.53
TDP1-210ENST00000554976 RBM33Q96EV2 1170 aaKnown RBP11.72□□□□□ -0.53
TDP1-210ENST00000554976 ARHGEF10O15013 1369 aa11.71□□□□□ -0.53
TDP1-210ENST00000554976 PPP4R2Q9NY27 417 aa11.71□□□□□ -0.53
TDP1-210ENST00000554976 PHF8Q9UPP1 1060 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms