RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 DDIT3P35638 169 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 WDR63Q8IWG1 891 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NOS1P29475 1434 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 IFT172Q9UG01 1749 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
SYNE3-203ENST00000554873 HSCBQ8IWL3 235 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 PMFBP1Q8TBY8 1022 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 ARID3AQ99856 593 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NOL7Q9UMY1 257 aaKnown RBP19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NCOA3Q9Y6Q9 1424 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 MTHFSP49914 203 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 BCL2L13Q9BXK5 485 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 MROH2AA6NES4 1674 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 CSPP1Q1MSJ5 1256 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 C22orf23Q9BZE7 217 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 TNPO1Q92973 898 aaKnown RBP19.52■□□□□ 0.71
SYNE3-203ENST00000554873 NAP1L2Q9ULW6 460 aaPredicted RBP19.52■□□□□ 0.71
SYNE3-203ENST00000554873 KIF20AO95235 890 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 EFCAB6Q5THR3 1501 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 ADGRL1O94910 1474 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 PPP4R3BQ5MIZ7 849 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 GTPBP4Q9BZE4 634 aaKnown RBP19.51■□□□□ 0.71
SYNE3-203ENST00000554873 CIZ1Q9ULV3 898 aaPredicted RBP19.51■□□□□ 0.71
SYNE3-203ENST00000554873 ABCA9Q8IUA7 1624 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 IQSEC2Q5JU85 1478 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 C14orf93Q9H972 538 aaKnown RBP19.5■□□□□ 0.71
SYNE3-203ENST00000554873 TMEM132EQ6IEE7 984 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 PDZRN3Q9UPQ7 1066 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 IBTKQ9P2D0 1353 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-203ENST00000554873 CCDC27Q2M243 656 aa19.48■□□□□ 0.71
SYNE3-203ENST00000554873 SASS6Q6UVJ0 657 aa19.48■□□□□ 0.71
SYNE3-203ENST00000554873 PPRC1Q5VV67 1664 aaKnown RBP19.48■□□□□ 0.71
SYNE3-203ENST00000554873 XPCQ01831 940 aaPredicted RBP19.47■□□□□ 0.71
SYNE3-203ENST00000554873 SETBP1Q9Y6X0 1596 aa19.47■□□□□ 0.71
SYNE3-203ENST00000554873 RAB3GAP1Q15042 981 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 ZNF518AQ6AHZ1 1483 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 CFAP53Q96M91 514 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 RWDD1Q9H446 243 aaPredicted RBP19.46■□□□□ 0.71
SYNE3-203ENST00000554873 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.45■□□□□ 0.7
SYNE3-203ENST00000554873 ADGRB3O60242 1522 aa19.45■□□□□ 0.7
SYNE3-203ENST00000554873 LETM1O95202 739 aaPredicted RBP19.45■□□□□ 0.7
SYNE3-203ENST00000554873 SMC5Q8IY18 1101 aa19.45■□□□□ 0.7
SYNE3-203ENST00000554873 MCM5P33992 734 aa19.44■□□□□ 0.7
SYNE3-203ENST00000554873 CFAP65Q6ZU64 1925 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 IPO4Q8TEX9 1081 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 QRICH2Q9H0J4 1663 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 ADGRB1O14514 1584 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 LMTK2Q8IWU2 1503 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 U2AF1L5P0DN76 240 aaPredicted RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 MFAP1P55081 439 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 U2AF1Q01081 240 aaKnown RBP eCLIP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 ZKSCAN5Q9Y2L8 839 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 MVPQ14764 893 aaKnown RBP19.42■□□□□ 0.7
SYNE3-203ENST00000554873 ZC3H13Q5T200 1668 aaKnown RBP19.42■□□□□ 0.7
SYNE3-203ENST00000554873 SNX21Q969T3 373 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 PDLIM2Q96JY6 352 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 KIDINS220Q9ULH0 1771 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 CHMP4BQ9H444 224 aaKnown RBP19.41■□□□□ 0.7
SYNE3-203ENST00000554873 NCBP3Q53F19 620 aaKnown RBP19.4■□□□□ 0.7
SYNE3-203ENST00000554873 KLHL40Q2TBA0 621 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 TAF7LQ5H9L4 462 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 ZKSCAN2Q63HK3 967 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 TMEM51Q9NW97 253 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 NPATQ14207 1427 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 GOLGA6L22H0YM25 854 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 PPLO60437 1756 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 ZNF445P59923 1031 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 USP32Q8NFA0 1604 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 GGT6Q6P531 493 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 DZIP1LQ8IYY4 767 aaKnown RBP19.38■□□□□ 0.69
SYNE3-203ENST00000554873 TSR2Q969E8 191 aaKnown RBP19.38■□□□□ 0.69
SYNE3-203ENST00000554873 RPGRIP1LQ68CZ1 1315 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 EVC2Q86UK5 1308 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 NUTM2DQ5VT03 806 aaPredicted RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 TAF3Q5VWG9 929 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 FTSJ3Q8IY81 847 aaKnown RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 PUS7Q96PZ0 661 aaKnown RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 ANKRD36BQ8N2N9 1353 aa19.36■□□□□ 0.69
SYNE3-203ENST00000554873 CABP2Q9NPB3 220 aa19.36■□□□□ 0.69
SYNE3-203ENST00000554873 DDX49Q9Y6V7 483 aaKnown RBP19.36■□□□□ 0.69
SYNE3-203ENST00000554873 HSP90AB1P08238 724 aaKnown RBP19.35■□□□□ 0.69
SYNE3-203ENST00000554873 EXOSC9Q06265 439 aaKnown RBP19.34■□□□□ 0.69
SYNE3-203ENST00000554873 CLEC17AQ6ZS10 378 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 MYRIPQ8NFW9 859 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 NSD2O96028 1365 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 ASXL2Q76L83 1435 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 CT47B1P0C2W7 299 aaPredicted RBP19.33■□□□□ 0.69
SYNE3-203ENST00000554873 SMC4Q9NTJ3 1288 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 CBX1P83916 185 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 PLEKHF1Q96S99 279 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 TRIM27P14373 513 aa19.33■□□□□ 0.68
SYNE3-203ENST00000554873 RBM25P49756 843 aaKnown RBP19.33■□□□□ 0.68
SYNE3-203ENST00000554873 CCDC39Q9UFE4 941 aa19.33■□□□□ 0.68
SYNE3-203ENST00000554873 SSH1Q8WYL5 1049 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TRIM35Q9UPQ4 493 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TULP4Q9NRJ4 1543 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TMPOP42166 694 aaKnown RBP19.32■□□□□ 0.68
SYNE3-203ENST00000554873 ADGRB2O60241 1585 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 U2SURPO15042 1029 aaKnown RBP19.31■□□□□ 0.68
SYNE3-203ENST00000554873 SAFB2Q14151 953 aaKnown RBP eCLIP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms