RNA–Protein interactions for RNA: ENST00000554600.5

SHMT2-213, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 837 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-213ENST00000554600 CRYBG1Q9Y4K1 1723 aa15.11■□□□□ 0.01
SHMT2-213ENST00000554600 NWD2Q9ULI1 1742 aa15.1■□□□□ 0.01
SHMT2-213ENST00000554600 UPF1Q92900 1129 aaKnown RBP eCLIP15.1■□□□□ 0.01
SHMT2-213ENST00000554600 AKAP12Q02952 1782 aa15.1■□□□□ 0.01
SHMT2-213ENST00000554600 POLR3AO14802 1390 aaPredicted RBP15.1■□□□□ 0.01
SHMT2-213ENST00000554600 PLEKHG3A1L390 1219 aa15.09■□□□□ 0.01
SHMT2-213ENST00000554600 RBM6P78332 1123 aaKnown RBP15.09■□□□□ 0.01
SHMT2-213ENST00000554600 NUTM2GQ5VZR2 741 aa15.09■□□□□ 0.01
SHMT2-213ENST00000554600 FNBP4Q8N3X1 1017 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-213ENST00000554600 TRPC5Q9UL62 973 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-213ENST00000554600 PHRF1Q9P1Y6 1649 aaKnown RBP15.09■□□□□ 0.01
SHMT2-213ENST00000554600 CABP1Q9NZU7 370 aa15.08■□□□□ 0
SHMT2-213ENST00000554600 CLSPNQ9HAW4 1339 aa15.08■□□□□ 0
SHMT2-213ENST00000554600 COL14A1Q05707 1796 aaKnown RBP15.06■□□□□ 0
SHMT2-213ENST00000554600 ABTB2Q8N961 1025 aa15.05■□□□□ -0
SHMT2-213ENST00000554600 ATRNO75882 1429 aa15.05■□□□□ -0
SHMT2-213ENST00000554600 BCL9LQ86UU0 1499 aa15.05■□□□□ -0
SHMT2-213ENST00000554600 CDK12Q9NYV4 1490 aaPredicted RBP15.05■□□□□ -0
SHMT2-213ENST00000554600 SLIT2O94813 1529 aa15.05■□□□□ -0
SHMT2-213ENST00000554600 RGS12O14924 1447 aa15.04■□□□□ -0
SHMT2-213ENST00000554600 ATAD2Q6PL18 1390 aa15.04■□□□□ -0
SHMT2-213ENST00000554600 SBNO2Q9Y2G9 1366 aa15.04■□□□□ -0
SHMT2-213ENST00000554600 UNC5CLQ8IV45 518 aa15.04■□□□□ -0
SHMT2-213ENST00000554600 CCDC9Q9Y3X0 531 aaKnown RBP15.04■□□□□ -0
SHMT2-213ENST00000554600 MON2Q7Z3U7 1717 aa15.03■□□□□ -0
SHMT2-213ENST00000554600 NRAPQ86VF7 1730 aa15.03■□□□□ -0
SHMT2-213ENST00000554600 USP6P35125 1406 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 BRWD3Q6RI45 1802 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 ST20-MTHFSA0A0A6YYL1 179 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 FAM83GA6ND36 823 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 TMC1Q8TDI8 760 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 PRDM11Q9NQV5 511 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 TIMELESSQ9UNS1 1208 aa15.02■□□□□ -0
SHMT2-213ENST00000554600 PIK3C2AO00443 1686 aa15.01□□□□□ -0.01
SHMT2-213ENST00000554600 ZC3H6P61129 1189 aaKnown RBP15.01□□□□□ -0.01
SHMT2-213ENST00000554600 BRD4O60885 1362 aaPredicted RBP15□□□□□ -0.01
SHMT2-213ENST00000554600 USP47Q96K76 1375 aa15□□□□□ -0.01
SHMT2-213ENST00000554600 GLI3P10071 1580 aa15□□□□□ -0.01
SHMT2-213ENST00000554600 NRKQ7Z2Y5 1582 aa15□□□□□ -0.01
SHMT2-213ENST00000554600 NLRP13Q86W25 1043 aa15□□□□□ -0.01
SHMT2-213ENST00000554600 GJD4Q96KN9 370 aaPredicted RBP15□□□□□ -0.01
SHMT2-213ENST00000554600 BTG4Q9NY30 223 aa15□□□□□ -0.01
SHMT2-213ENST00000554600 KTN1Q86UP2 1357 aaKnown RBP14.99□□□□□ -0.01
SHMT2-213ENST00000554600 ZBTB7CA1YPR0 619 aa14.99□□□□□ -0.01
SHMT2-213ENST00000554600 CHRNA2Q15822 529 aa14.99□□□□□ -0.01
SHMT2-213ENST00000554600 ZNF692Q9BU19 519 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-213ENST00000554600 KIAA0232Q92628 1395 aa14.98□□□□□ -0.01
SHMT2-213ENST00000554600 NLRP6P59044 892 aa14.98□□□□□ -0.01
SHMT2-213ENST00000554600 A0A0G2JS52 829 aa14.97□□□□□ -0.01
SHMT2-213ENST00000554600 MYT1Q01538 1121 aa14.97□□□□□ -0.01
SHMT2-213ENST00000554600 VPS72Q15906 364 aa14.97□□□□□ -0.01
SHMT2-213ENST00000554600 RGPD5Q99666 1765 aa14.97□□□□□ -0.01
SHMT2-213ENST00000554600 TTC21BQ7Z4L5 1316 aa14.96□□□□□ -0.01
SHMT2-213ENST00000554600 SLC24A1O60721 1099 aa14.96□□□□□ -0.01
SHMT2-213ENST00000554600 HDGFL2Q7Z4V5 671 aaPredicted RBP14.96□□□□□ -0.01
SHMT2-213ENST00000554600 TESK2Q96S53 571 aa14.96□□□□□ -0.01
SHMT2-213ENST00000554600 USP19O94966 1318 aa14.95□□□□□ -0.02
SHMT2-213ENST00000554600 CPSF1Q10570 1443 aaKnown RBP14.95□□□□□ -0.02
SHMT2-213ENST00000554600 GCP02774 474 aa14.95□□□□□ -0.02
SHMT2-213ENST00000554600 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.95□□□□□ -0.02
SHMT2-213ENST00000554600 SLC12A5Q9H2X9 1139 aa14.95□□□□□ -0.02
SHMT2-213ENST00000554600 STRN4Q9NRL3 753 aa14.95□□□□□ -0.02
SHMT2-213ENST00000554600 SOX12O15370 315 aa14.94□□□□□ -0.02
SHMT2-213ENST00000554600 TMF1P82094 1093 aa14.94□□□□□ -0.02
SHMT2-213ENST00000554600 TERF2IPQ9NYB0 399 aa14.94□□□□□ -0.02
SHMT2-213ENST00000554600 TTC21AQ8NDW8 1320 aa14.93□□□□□ -0.02
SHMT2-213ENST00000554600 SSH2Q76I76 1423 aa14.93□□□□□ -0.02
SHMT2-213ENST00000554600 EVA1CP58658 441 aa14.93□□□□□ -0.02
SHMT2-213ENST00000554600 LTN1O94822 1766 aa14.93□□□□□ -0.02
SHMT2-213ENST00000554600 SLIT3O75094 1523 aa14.92□□□□□ -0.02
SHMT2-213ENST00000554600 PUS7Q96PZ0 661 aaKnown RBP14.92□□□□□ -0.02
SHMT2-213ENST00000554600 CD163L1Q9NR16 1453 aa14.92□□□□□ -0.02
SHMT2-213ENST00000554600 LMO7Q8WWI1 1683 aa14.92□□□□□ -0.02
SHMT2-213ENST00000554600 CPDO75976 1380 aa14.91□□□□□ -0.02
SHMT2-213ENST00000554600 FAM98CQ17RN3 349 aaKnown RBP14.91□□□□□ -0.02
SHMT2-213ENST00000554600 SEPT12Q8IYM1 358 aa14.91□□□□□ -0.02
SHMT2-213ENST00000554600 CAMTA1Q9Y6Y1 1673 aa14.9□□□□□ -0.02
SHMT2-213ENST00000554600 A0A1W2PP64 1363 aa14.9□□□□□ -0.02
SHMT2-213ENST00000554600 USP54Q70EL1 1684 aa14.9□□□□□ -0.02
SHMT2-213ENST00000554600 NINLQ9Y2I6 1382 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 COL18A1P39060 1754 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 CDCA8Q53HL2 280 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 NME9Q86XW9 330 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 USP35Q9P2H5 1018 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 EDC4Q6P2E9 1401 aaKnown RBP14.89□□□□□ -0.03
SHMT2-213ENST00000554600 SPATA31A5Q5VU36 1347 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 SPATA31A7Q8IWB4 1347 aa14.89□□□□□ -0.03
SHMT2-213ENST00000554600 KIF20BQ96Q89 1820 aa14.88□□□□□ -0.03
SHMT2-213ENST00000554600 KCNH5Q8NCM2 988 aa14.88□□□□□ -0.03
SHMT2-213ENST00000554600 POLR3GLQ9BT43 218 aa14.88□□□□□ -0.03
SHMT2-213ENST00000554600 ZRANB1Q9UGI0 708 aa14.88□□□□□ -0.03
SHMT2-213ENST00000554600 MYOM1P52179 1685 aa14.87□□□□□ -0.03
SHMT2-213ENST00000554600 LARP1Q6PKG0 1096 aaKnown RBP14.86□□□□□ -0.03
SHMT2-213ENST00000554600 THSD7AQ9UPZ6 1657 aa14.86□□□□□ -0.03
SHMT2-213ENST00000554600 SPATA31A1Q5TZJ5 1347 aa14.86□□□□□ -0.03
SHMT2-213ENST00000554600 KAT6BQ8WYB5 2073 aa14.85□□□□□ -0.03
SHMT2-213ENST00000554600 EIF4G2P78344 907 aaKnown RBP eCLIP14.85□□□□□ -0.03
SHMT2-213ENST00000554600 KRT27Q7Z3Y8 459 aa14.85□□□□□ -0.03
SHMT2-213ENST00000554600 NFAT5O94916 1531 aa14.85□□□□□ -0.03
SHMT2-213ENST00000554600 AATKQ6ZMQ8 1374 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms