RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 PAK3O75914 559 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 UPF1Q92900 1129 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 CABP1Q9NZU7 370 aa14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 TRPC5Q9UL62 973 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 ATRNO75882 1429 aa14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 TRPM3Q9HCF6 1732 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 CDK12Q9NYV4 1490 aaPredicted RBP14.63□□□□□ -0.07
CCDC88C-206ENST00000553437 SLIT2O94813 1529 aa14.62□□□□□ -0.07
CCDC88C-206ENST00000553437 HAP1P54257 671 aaPredicted RBP14.62□□□□□ -0.07
CCDC88C-206ENST00000553437 PPIP5K1Q6PFW1 1433 aa14.62□□□□□ -0.07
CCDC88C-206ENST00000553437 CLSPNQ9HAW4 1339 aa14.62□□□□□ -0.07
CCDC88C-206ENST00000553437 SBNO2Q9Y2G9 1366 aa14.61□□□□□ -0.07
CCDC88C-206ENST00000553437 FAM83GA6ND36 823 aa14.61□□□□□ -0.07
CCDC88C-206ENST00000553437 TOPAZ1Q8N9V7 1692 aa14.61□□□□□ -0.07
CCDC88C-206ENST00000553437 QRICH2Q9H0J4 1663 aa14.61□□□□□ -0.07
CCDC88C-206ENST00000553437 UNC5CLQ8IV45 518 aa14.6□□□□□ -0.07
CCDC88C-206ENST00000553437 ALS2Q96Q42 1657 aa14.59□□□□□ -0.07
CCDC88C-206ENST00000553437 RGS12O14924 1447 aa14.58□□□□□ -0.07
CCDC88C-206ENST00000553437 ITSN1Q15811 1721 aa14.58□□□□□ -0.07
CCDC88C-206ENST00000553437 NUTM2GQ5VZR2 741 aa14.58□□□□□ -0.08
CCDC88C-206ENST00000553437 GJD4Q96KN9 370 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-206ENST00000553437 TIMELESSQ9UNS1 1208 aa14.58□□□□□ -0.08
CCDC88C-206ENST00000553437 BRD4O60885 1362 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-206ENST00000553437 ABTB2Q8N961 1025 aa14.56□□□□□ -0.08
CCDC88C-206ENST00000553437 TESK2Q96S53 571 aa14.56□□□□□ -0.08
CCDC88C-206ENST00000553437 USP6P35125 1406 aa14.56□□□□□ -0.08
CCDC88C-206ENST00000553437 SSH2Q76I76 1423 aa14.56□□□□□ -0.08
CCDC88C-206ENST00000553437 ST20-MTHFSA0A0A6YYL1 179 aa14.55□□□□□ -0.08
CCDC88C-206ENST00000553437 VPS72Q15906 364 aa14.55□□□□□ -0.08
CCDC88C-206ENST00000553437 USP19O94966 1318 aa14.55□□□□□ -0.08
CCDC88C-206ENST00000553437 ATAD2Q6PL18 1390 aa14.55□□□□□ -0.08
CCDC88C-206ENST00000553437 MARF1Q9Y4F3 1742 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-206ENST00000553437 ZNF692Q9BU19 519 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-206ENST00000553437 ABCA3Q99758 1704 aa14.54□□□□□ -0.08
CCDC88C-206ENST00000553437 PUS7Q96PZ0 661 aaKnown RBP14.53□□□□□ -0.08
CCDC88C-206ENST00000553437 BTG4Q9NY30 223 aa14.53□□□□□ -0.08
CCDC88C-206ENST00000553437 CPSF1Q10570 1443 aaKnown RBP14.52□□□□□ -0.08
CCDC88C-206ENST00000553437 KIAA0232Q92628 1395 aa14.52□□□□□ -0.08
CCDC88C-206ENST00000553437 NLRP13Q86W25 1043 aa14.52□□□□□ -0.09
CCDC88C-206ENST00000553437 PRDM11Q9NQV5 511 aa14.52□□□□□ -0.09
CCDC88C-206ENST00000553437 TTC21BQ7Z4L5 1316 aa14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 ONECUT3O60422 494 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 GCP02774 474 aa14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 ZC3H6P61129 1189 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 CHRNA2Q15822 529 aa14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 CCER1Q8TC90 406 aaPredicted RBP14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 CRYBG1Q9Y4K1 1723 aa14.51□□□□□ -0.09
CCDC88C-206ENST00000553437 SLC12A5Q9H2X9 1139 aa14.5□□□□□ -0.09
CCDC88C-206ENST00000553437 GLI3P10071 1580 aa14.5□□□□□ -0.09
CCDC88C-206ENST00000553437 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-206ENST00000553437 CPDO75976 1380 aa14.49□□□□□ -0.09
CCDC88C-206ENST00000553437 USP47Q96K76 1375 aa14.49□□□□□ -0.09
CCDC88C-206ENST00000553437 NLRP6P59044 892 aa14.49□□□□□ -0.09
CCDC88C-206ENST00000553437 CD163L1Q9NR16 1453 aa14.49□□□□□ -0.09
CCDC88C-206ENST00000553437 DCAF8L1A6NGE4 600 aa14.48□□□□□ -0.09
CCDC88C-206ENST00000553437 CCDC9Q9Y3X0 531 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-206ENST00000553437 KTN1Q86UP2 1357 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 SPATA31A5Q5VU36 1347 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 SPATA31A7Q8IWB4 1347 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 TTC21AQ8NDW8 1320 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 NWD2Q9ULI1 1742 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 PLCH1Q4KWH8 1693 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 SLC24A1O60721 1099 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 SEPT12Q8IYM1 358 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 TMC1Q8TDI8 760 aa14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 COL14A1Q05707 1796 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-206ENST00000553437 PHRF1Q9P1Y6 1649 aaKnown RBP14.46□□□□□ -0.09
CCDC88C-206ENST00000553437 NRKQ7Z2Y5 1582 aa14.46□□□□□ -0.09
CCDC88C-206ENST00000553437 SLIT3O75094 1523 aa14.45□□□□□ -0.1
CCDC88C-206ENST00000553437 NRAPQ86VF7 1730 aa14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 EP400Q96L91 3159 aa14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 FAM98CQ17RN3 349 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 HDGFL2Q7Z4V5 671 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 TERF2IPQ9NYB0 399 aa14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 ZRANB1Q9UGI0 708 aa14.44□□□□□ -0.1
CCDC88C-206ENST00000553437 SPATA31A1Q5TZJ5 1347 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 CAMTA1Q9Y6Y1 1673 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 TMF1P82094 1093 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 STRN4Q9NRL3 753 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 A0A1W2PP64 1363 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 USP31Q70CQ4 1352 aa14.43□□□□□ -0.1
CCDC88C-206ENST00000553437 PIK3C2AO00443 1686 aa14.42□□□□□ -0.1
CCDC88C-206ENST00000553437 ARHGEF25Q86VW2 580 aa14.42□□□□□ -0.1
CCDC88C-206ENST00000553437 NME9Q86XW9 330 aa14.42□□□□□ -0.1
CCDC88C-206ENST00000553437 AATKQ6ZMQ8 1374 aa14.42□□□□□ -0.1
CCDC88C-206ENST00000553437 NINLQ9Y2I6 1382 aa14.42□□□□□ -0.1
CCDC88C-206ENST00000553437 EDC4Q6P2E9 1401 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-206ENST00000553437 EVA1CP58658 441 aa14.41□□□□□ -0.1
CCDC88C-206ENST00000553437 LARP1Q6PKG0 1096 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-206ENST00000553437 KCNH5Q8NCM2 988 aa14.41□□□□□ -0.1
CCDC88C-206ENST00000553437 AKAP12Q02952 1782 aa14.41□□□□□ -0.1
CCDC88C-206ENST00000553437 C1QBPQ07021 282 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-206ENST00000553437 KRT27Q7Z3Y8 459 aa14.4□□□□□ -0.1
CCDC88C-206ENST00000553437 AXIN2Q9Y2T1 843 aa14.4□□□□□ -0.1
CCDC88C-206ENST00000553437 LMO7Q8WWI1 1683 aa14.39□□□□□ -0.11
CCDC88C-206ENST00000553437 ZBTB7CA1YPR0 619 aa14.39□□□□□ -0.11
CCDC88C-206ENST00000553437 COL5A2P05997 1499 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-206ENST00000553437 SOX12O15370 315 aa14.38□□□□□ -0.11
CCDC88C-206ENST00000553437 CDCA8Q53HL2 280 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms