RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 TIE1P35590 1138 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 TCP11L2Q8N4U5 519 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 SLC12A5Q9H2X9 1139 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 IFT172Q9UG01 1749 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 MYOM2P54296 1465 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 TTLL13PA6NNM8 815 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 PDZRN3Q9UPQ7 1066 aa6.95□□□□□ -1.3
LIMA1-212ENST00000552491 MYO3AQ8NEV4 1616 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 ST18O60284 1047 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 NINLQ9Y2I6 1382 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 MORC1Q86VD1 984 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 RUNDC1Q96C34 613 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 TBC1D32Q96NH3 1257 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 TBC1D2Q9BYX2 928 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 TRAK1Q9UPV9 953 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 KIF1BO60333 1816 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 ATP7AQ04656 1500 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 NEURL4Q96JN8 1562 aa6.94□□□□□ -1.3
LIMA1-212ENST00000552491 INO80Q9ULG1 1556 aaPredicted RBP6.94□□□□□ -1.3
LIMA1-212ENST00000552491 NRXN1Q9ULB1 1477 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 CFAP65Q6ZU64 1925 aaKnown RBP6.93□□□□□ -1.3
LIMA1-212ENST00000552491 MTHFSP49914 203 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 SBNO2Q9Y2G9 1366 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 NOS1P29475 1434 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 KANK1Q14678 1352 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 PMFBP1Q8TBY8 1022 aa6.93□□□□□ -1.3
LIMA1-212ENST00000552491 PPRC1Q5VV67 1664 aaKnown RBP6.92□□□□□ -1.3
LIMA1-212ENST00000552491 RIMBP3CA6NJZ7 1639 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 RIMBP3BA6NNM3 1639 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 RIMBP3Q9UFD9 1639 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 AAMPQ13685 434 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 BECN1Q14457 450 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 TMEM132EQ6IEE7 984 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 WDR63Q8IWG1 891 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 RASEFQ8IZ41 740 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 SPRYD3Q8NCJ5 442 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 ZC3H13Q5T200 1668 aaKnown RBP6.92□□□□□ -1.3
LIMA1-212ENST00000552491 UHRF1BP1LA0JNW5 1464 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 ZNF518AQ6AHZ1 1483 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 SLAIN1Q8ND83 568 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 TRIM35Q9UPQ4 493 aa6.92□□□□□ -1.3
LIMA1-212ENST00000552491 EFCAB6Q5THR3 1501 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 QRICH2Q9H0J4 1663 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 FAM43AQ8N2R8 423 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 RRAGDQ9NQL2 400 aaPredicted RBP6.91□□□□□ -1.3
LIMA1-212ENST00000552491 ARAP3Q8WWN8 1544 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 FANCAO15360 1455 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 ADGRB1O14514 1584 aa6.91□□□□□ -1.3
LIMA1-212ENST00000552491 TSR2Q969E8 191 aaKnown RBP6.91□□□□□ -1.3
LIMA1-212ENST00000552491 ABCA9Q8IUA7 1624 aa6.9□□□□□ -1.3
LIMA1-212ENST00000552491 CHGAP10645 457 aaKnown RBP6.9□□□□□ -1.3
LIMA1-212ENST00000552491 MVPQ14764 893 aaKnown RBP6.9□□□□□ -1.3
LIMA1-212ENST00000552491 CCDC27Q2M243 656 aa6.9□□□□□ -1.3
LIMA1-212ENST00000552491 SETBP1Q9Y6X0 1596 aa6.9□□□□□ -1.31
LIMA1-212ENST00000552491 ADGRB3O60242 1522 aa6.9□□□□□ -1.31
LIMA1-212ENST00000552491 MMRN1Q13201 1228 aa6.9□□□□□ -1.31
LIMA1-212ENST00000552491 ARXQ96QS3 562 aa6.9□□□□□ -1.31
LIMA1-212ENST00000552491 RWDD1Q9H446 243 aaPredicted RBP6.9□□□□□ -1.31
LIMA1-212ENST00000552491 ZMYM3Q14202 1370 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 C14orf93Q9H972 538 aaKnown RBP6.89□□□□□ -1.31
LIMA1-212ENST00000552491 ADGRL1O94910 1474 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 PPLO60437 1756 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 KIDINS220Q9ULH0 1771 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 ADGRB2O60241 1585 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 EIF5BO60841 1220 aaKnown RBP6.89□□□□□ -1.31
LIMA1-212ENST00000552491 U2AF1L5P0DN76 240 aaPredicted RBP6.89□□□□□ -1.31
LIMA1-212ENST00000552491 U2AF1Q01081 240 aaKnown RBP eCLIP6.89□□□□□ -1.31
LIMA1-212ENST00000552491 CD109Q6YHK3 1445 aa6.89□□□□□ -1.31
LIMA1-212ENST00000552491 USP32Q8NFA0 1604 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 XRCC6P12956 609 aaKnown RBP eCLIP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 TRIM27P14373 513 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 MCM4P33991 863 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 EXOSC9Q06265 439 aaKnown RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 NUTM2DQ5VT03 806 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 ZKSCAN2Q63HK3 967 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 DZIP1LQ8IYY4 767 aaKnown RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 UPF2Q9HAU5 1272 aaKnown RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 TULP4Q9NRJ4 1543 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 MFAP1P55081 439 aaKnown RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 SSH1Q8WYL5 1049 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 PANK2Q9BZ23 570 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 C22orf23Q9BZE7 217 aa6.88□□□□□ -1.31
LIMA1-212ENST00000552491 GZF1Q9H116 711 aaPredicted RBP6.88□□□□□ -1.31
LIMA1-212ENST00000552491 NPATQ14207 1427 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 FSD2A1L4K1 749 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 SPNS2Q8IVW8 549 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 PLEKHF1Q96S99 279 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 MYH16Q9H6N6 1097 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 FTSJ3Q8IY81 847 aaKnown RBP6.87□□□□□ -1.31
LIMA1-212ENST00000552491 CABP2Q9NPB3 220 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 SMC4Q9NTJ3 1288 aa6.87□□□□□ -1.31
LIMA1-212ENST00000552491 CFAP53Q96M91 514 aa6.86□□□□□ -1.31
LIMA1-212ENST00000552491 LMTK2Q8IWU2 1503 aa6.86□□□□□ -1.31
LIMA1-212ENST00000552491 TMPOP42166 694 aaKnown RBP6.86□□□□□ -1.31
LIMA1-212ENST00000552491 HDAC1Q13547 482 aaPredicted RBP6.86□□□□□ -1.31
LIMA1-212ENST00000552491 SAFB2Q14151 953 aaKnown RBP eCLIP6.86□□□□□ -1.31
LIMA1-212ENST00000552491 ITPRIPQ8IWB1 547 aa6.86□□□□□ -1.31
LIMA1-212ENST00000552491 NOB1Q9ULX3 412 aaKnown RBP6.86□□□□□ -1.31
LIMA1-212ENST00000552491 GLI2P10070 1586 aa6.86□□□□□ -1.31
LIMA1-212ENST00000552491 ARHGEF28Q8N1W1 1705 aaKnown RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms