RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SPIRE2Q8WWL2 714 aa10.32□□□□□ -0.76
VPS29-210ENST00000552130 DESI1Q6ICB0 168 aa10.31□□□□□ -0.76
VPS29-210ENST00000552130 SSTR3P32745 418 aaPredicted RBP10.3□□□□□ -0.76
VPS29-210ENST00000552130 KCNH2Q12809 1159 aa10.3□□□□□ -0.76
VPS29-210ENST00000552130 IRF7Q92985 503 aa10.3□□□□□ -0.76
VPS29-210ENST00000552130 ZMYND15Q9H091 742 aa10.3□□□□□ -0.76
VPS29-210ENST00000552130 RSPH6AQ9H0K4 717 aa10.3□□□□□ -0.76
VPS29-210ENST00000552130 ZBTB7CA1YPR0 619 aa10.29□□□□□ -0.76
VPS29-210ENST00000552130 NEUROD2Q15784 382 aa10.29□□□□□ -0.76
VPS29-210ENST00000552130 BAP1Q92560 729 aa10.29□□□□□ -0.76
VPS29-210ENST00000552130 MOXD2PA6NHM9 499 aa10.28□□□□□ -0.76
VPS29-210ENST00000552130 NDUFV2P19404 249 aa10.28□□□□□ -0.76
VPS29-210ENST00000552130 VARSP26640 1264 aaKnown RBP10.28□□□□□ -0.76
VPS29-210ENST00000552130 ZNF511Q8NB15 262 aa10.28□□□□□ -0.76
VPS29-210ENST00000552130 ZFP42Q96MM3 310 aa10.28□□□□□ -0.76
VPS29-210ENST00000552130 TLL2Q9Y6L7 1015 aa10.28□□□□□ -0.76
VPS29-210ENST00000552130 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS29-210ENST00000552130 PRR7Q8TB68 274 aa10.27□□□□□ -0.77
VPS29-210ENST00000552130 KLF16Q9BXK1 252 aaPredicted RBP10.27□□□□□ -0.77
VPS29-210ENST00000552130 ERBB4Q15303 1308 aa10.27□□□□□ -0.77
VPS29-210ENST00000552130 LINC01559Q495D7 138 aa10.26□□□□□ -0.77
VPS29-210ENST00000552130 ZSCAN1Q8NBB4 408 aa10.26□□□□□ -0.77
VPS29-210ENST00000552130 ARID3AQ99856 593 aa10.26□□□□□ -0.77
VPS29-210ENST00000552130 PLEKHG3A1L390 1219 aa10.25□□□□□ -0.77
VPS29-210ENST00000552130 SPDYE5A6NIY4 337 aa10.25□□□□□ -0.77
VPS29-210ENST00000552130 KRI1Q8N9T8 703 aaKnown RBP10.25□□□□□ -0.77
VPS29-210ENST00000552130 LOC100996750A0A140TA64 210 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 LOC105371045A0A1W2PR82 267 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 FAM181BA6NEQ2 426 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 TIMP2P16035 220 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 GJA5P36382 358 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 VEGFBP49765 207 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 NNTQ13423 1086 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 MTMR2Q13614 643 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 AMHR2Q16671 573 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 KRTAP4-6Q9BYQ5 205 aa10.24□□□□□ -0.77
VPS29-210ENST00000552130 EIF5BO60841 1220 aaKnown RBP10.23□□□□□ -0.77
VPS29-210ENST00000552130 MRPL14Q6P1L8 145 aaKnown RBP10.23□□□□□ -0.77
VPS29-210ENST00000552130 VSIG8P0DPA2 414 aa10.21□□□□□ -0.77
VPS29-210ENST00000552130 LYPD8Q6UX82 237 aa10.21□□□□□ -0.77
VPS29-210ENST00000552130 BARGINQ6ZT62 677 aa10.21□□□□□ -0.77
VPS29-210ENST00000552130 CDK15Q96Q40 435 aa10.21□□□□□ -0.77
VPS29-210ENST00000552130 ADH1CP00326 375 aa10.19□□□□□ -0.78
VPS29-210ENST00000552130 PDIA4P13667 645 aaKnown RBP10.19□□□□□ -0.78
VPS29-210ENST00000552130 GIGYF2Q6Y7W6 1299 aaKnown RBP10.19□□□□□ -0.78
VPS29-210ENST00000552130 ZMYND10O75800 440 aa10.18□□□□□ -0.78
VPS29-210ENST00000552130 F12P00748 615 aaPredicted RBP10.18□□□□□ -0.78
VPS29-210ENST00000552130 WDR4P57081 412 aaKnown RBP10.18□□□□□ -0.78
VPS29-210ENST00000552130 RSBN1LQ6PCB5 846 aaPredicted RBP10.17□□□□□ -0.78
VPS29-210ENST00000552130 PURBQ96QR8 312 aaKnown RBP10.17□□□□□ -0.78
VPS29-210ENST00000552130 SCARF1Q14162 830 aa10.16□□□□□ -0.78
VPS29-210ENST00000552130 FAM174AQ8TBP5 190 aa10.16□□□□□ -0.78
VPS29-210ENST00000552130 BEGAINQ9BUH8 593 aa10.16□□□□□ -0.78
VPS29-210ENST00000552130 TBC1D2Q9BYX2 928 aa10.16□□□□□ -0.78
VPS29-210ENST00000552130 CFAP99D6REC4 459 aa10.15□□□□□ -0.78
VPS29-210ENST00000552130 TTLL12Q14166 644 aaPredicted RBP10.15□□□□□ -0.78
VPS29-210ENST00000552130 PCDHB15Q9Y5E8 787 aa10.15□□□□□ -0.78
VPS29-210ENST00000552130 SOBPA7XYQ1 873 aa10.14□□□□□ -0.79
VPS29-210ENST00000552130 SPTLC1O15269 473 aa10.14□□□□□ -0.79
VPS29-210ENST00000552130 C4orf48Q5BLP8 95 aa10.14□□□□□ -0.79
VPS29-210ENST00000552130 FOXJ1Q92949 421 aa10.14□□□□□ -0.79
VPS29-210ENST00000552130 C1orf115Q9H7X2 142 aa10.13□□□□□ -0.79
VPS29-210ENST00000552130 MAP10Q9P2G4 905 aa10.13□□□□□ -0.79
VPS29-210ENST00000552130 NR3C2P08235 984 aa10.12□□□□□ -0.79
VPS29-210ENST00000552130 GRM5P41594 1212 aa10.12□□□□□ -0.79
VPS29-210ENST00000552130 DIXDC1Q155Q3 683 aa10.12□□□□□ -0.79
VPS29-210ENST00000552130 ZFAND3Q9H8U3 227 aa10.12□□□□□ -0.79
VPS29-210ENST00000552130 CTHP32929 405 aa10.11□□□□□ -0.79
VPS29-210ENST00000552130 NR5A1Q13285 461 aa10.11□□□□□ -0.79
VPS29-210ENST00000552130 PRPF38BQ5VTL8 546 aaKnown RBP10.11□□□□□ -0.79
VPS29-210ENST00000552130 ITPKCQ96DU7 683 aa10.11□□□□□ -0.79
VPS29-210ENST00000552130 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
VPS29-210ENST00000552130 ZIC2O95409 532 aaPredicted RBP10.1□□□□□ -0.79
VPS29-210ENST00000552130 ZBTB3Q9H5J0 574 aa10.1□□□□□ -0.79
VPS29-210ENST00000552130 PARP9Q8IXQ6 854 aa10.09□□□□□ -0.79
VPS29-210ENST00000552130 ZC3H15Q8WU90 426 aaKnown RBP10.09□□□□□ -0.79
VPS29-210ENST00000552130 C1QTNF2Q9BXJ5 285 aa10.08□□□□□ -0.8
VPS29-210ENST00000552130 SLC24A3Q9HC58 644 aa10.08□□□□□ -0.8
VPS29-210ENST00000552130 PER1O15534 1290 aaPredicted RBP10.07□□□□□ -0.8
VPS29-210ENST00000552130 SH3RF1Q7Z6J0 888 aa10.07□□□□□ -0.8
VPS29-210ENST00000552130 PPFIA3O75145 1194 aa10.06□□□□□ -0.8
VPS29-210ENST00000552130 BPHLQ86WA6 291 aaPredicted RBP10.06□□□□□ -0.8
VPS29-210ENST00000552130 MEIOBQ8N635 442 aa10.06□□□□□ -0.8
VPS29-210ENST00000552130 GSK3AP49840 483 aa10.05□□□□□ -0.8
VPS29-210ENST00000552130 ARID5BQ14865 1188 aa10.05□□□□□ -0.8
VPS29-210ENST00000552130 RIC3Q7Z5B4 369 aa10.05□□□□□ -0.8
VPS29-210ENST00000552130 CABLES1Q8TDN4 633 aa10.05□□□□□ -0.8
VPS29-210ENST00000552130 SOS2Q07890 1332 aaPredicted RBP10.05□□□□□ -0.8
VPS29-210ENST00000552130 MAN1A2O60476 641 aa10.04□□□□□ -0.8
VPS29-210ENST00000552130 TUSC1Q2TAM9 212 aa10.04□□□□□ -0.8
VPS29-210ENST00000552130 LINC00528Q8N1L1 170 aa10.04□□□□□ -0.8
VPS29-210ENST00000552130 MAP4K5Q9Y4K4 846 aa10.04□□□□□ -0.8
VPS29-210ENST00000552130 TRIM66O15016 1216 aa10.03□□□□□ -0.8
VPS29-210ENST00000552130 IGSF3O75054 1194 aa10.03□□□□□ -0.8
VPS29-210ENST00000552130 C6orf118Q5T5N4 469 aa10.03□□□□□ -0.8
VPS29-210ENST00000552130 HMGB1P09429 215 aaKnown RBP10.02□□□□□ -0.81
VPS29-210ENST00000552130 KCNMA1Q12791 1236 aa10.02□□□□□ -0.81
VPS29-210ENST00000552130 TRMT44Q8IYL2 757 aaKnown RBP10.02□□□□□ -0.81
VPS29-210ENST00000552130 DNMT3LQ9UJW3 386 aa10.02□□□□□ -0.81
VPS29-210ENST00000552130 SH3BP5LQ7L8J4 393 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms