RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 DNMBPQ6XZF7 1577 aa9.75□□□□□ -0.85
SCAF11-213ENST00000550629 URB2Q14146 1524 aaKnown RBP9.74□□□□□ -0.85
SCAF11-213ENST00000550629 KDM4CQ9H3R0 1056 aa9.74□□□□□ -0.85
SCAF11-213ENST00000550629 WRNQ14191 1432 aaPredicted RBP eCLIP9.73□□□□□ -0.85
SCAF11-213ENST00000550629 C6orf229H3BNL8 230 aa9.73□□□□□ -0.85
SCAF11-213ENST00000550629 RSBN1LQ6PCB5 846 aaPredicted RBP9.73□□□□□ -0.85
SCAF11-213ENST00000550629 DACH1Q9UI36 760 aa9.73□□□□□ -0.85
SCAF11-213ENST00000550629 TOPBP1Q92547 1522 aa9.72□□□□□ -0.85
SCAF11-213ENST00000550629 C11orf95C9JLR9 678 aaPredicted RBP9.72□□□□□ -0.85
SCAF11-213ENST00000550629 DXOO77932 396 aaKnown RBP9.72□□□□□ -0.85
SCAF11-213ENST00000550629 GJA5P36382 358 aa9.72□□□□□ -0.85
SCAF11-213ENST00000550629 RETREG3Q86VR2 466 aa9.72□□□□□ -0.85
SCAF11-213ENST00000550629 CCDC24Q8N4L8 307 aa9.72□□□□□ -0.85
SCAF11-213ENST00000550629 SNIP1Q8TAD8 396 aaKnown RBP9.72□□□□□ -0.85
SCAF11-213ENST00000550629 GMPR2Q9P2T1 348 aaKnown RBP9.72□□□□□ -0.85
SCAF11-213ENST00000550629 CUX1P39880 1505 aa9.72□□□□□ -0.85
SCAF11-213ENST00000550629 SPTLC1O15269 473 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 MYSM1Q5VVJ2 828 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 RIC3Q7Z5B4 369 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 MRGPRX2Q96LB1 330 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 PCDHB15Q9Y5E8 787 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 CUX2O14529 1486 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 TOP2BQ02880 1626 aa9.71□□□□□ -0.86
SCAF11-213ENST00000550629 SMCPP49901 116 aaPredicted RBP9.7□□□□□ -0.86
SCAF11-213ENST00000550629 BIVM-ERCC5R4GMW8 1640 aa9.7□□□□□ -0.86
SCAF11-213ENST00000550629 WIPF1O43516 503 aa9.69□□□□□ -0.86
SCAF11-213ENST00000550629 INSM1Q01101 510 aaPredicted RBP9.69□□□□□ -0.86
SCAF11-213ENST00000550629 MTMR2Q13614 643 aa9.69□□□□□ -0.86
SCAF11-213ENST00000550629 FAM117AQ9C073 453 aa9.69□□□□□ -0.86
SCAF11-213ENST00000550629 SYNJ1O43426 1573 aa9.68□□□□□ -0.86
SCAF11-213ENST00000550629 SMPD1P17405 629 aa9.68□□□□□ -0.86
SCAF11-213ENST00000550629 JUNDP17535 347 aa9.68□□□□□ -0.86
SCAF11-213ENST00000550629 LIMD1Q9UGP4 676 aa9.68□□□□□ -0.86
SCAF11-213ENST00000550629 NFX1Q12986 1120 aaKnown RBP9.67□□□□□ -0.86
SCAF11-213ENST00000550629 CSPP1Q1MSJ5 1256 aa9.67□□□□□ -0.86
SCAF11-213ENST00000550629 HRCP23327 699 aa9.66□□□□□ -0.86
SCAF11-213ENST00000550629 PRR7Q8TB68 274 aa9.66□□□□□ -0.86
SCAF11-213ENST00000550629 POLA1P09884 1462 aaPredicted RBP9.66□□□□□ -0.86
SCAF11-213ENST00000550629 SPDYE5A6NIY4 337 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 J3QL48 77 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 WNT7BP56706 349 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 NEUROD2Q15784 382 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 CABLES1Q8TDN4 633 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 DDRGK1Q96HY6 314 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 RSPH6AQ9H0K4 717 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 POLR3EQ9NVU0 708 aa9.65□□□□□ -0.86
SCAF11-213ENST00000550629 FGD5Q6ZNL6 1462 aa9.65□□□□□ -0.87
SCAF11-213ENST00000550629 IFT140Q96RY7 1462 aa9.65□□□□□ -0.87
SCAF11-213ENST00000550629 PLEKHG3A1L390 1219 aa9.64□□□□□ -0.87
SCAF11-213ENST00000550629 CLK2P49760 499 aaKnown RBP9.64□□□□□ -0.87
SCAF11-213ENST00000550629 RC3H1Q5TC82 1133 aaKnown RBP9.64□□□□□ -0.87
SCAF11-213ENST00000550629 PRPF38BQ5VTL8 546 aaKnown RBP9.64□□□□□ -0.87
SCAF11-213ENST00000550629 ZBTB3Q9H5J0 574 aa9.64□□□□□ -0.87
SCAF11-213ENST00000550629 ATP13A2Q9NQ11 1180 aa9.64□□□□□ -0.87
SCAF11-213ENST00000550629 SUZ12Q15022 739 aaKnown RBP9.63□□□□□ -0.87
SCAF11-213ENST00000550629 QPCTQ16769 361 aa9.63□□□□□ -0.87
SCAF11-213ENST00000550629 TUSC1Q2TAM9 212 aa9.63□□□□□ -0.87
SCAF11-213ENST00000550629 LCE2CQ5TA81 110 aa9.63□□□□□ -0.87
SCAF11-213ENST00000550629 CFAP99D6REC4 459 aa9.62□□□□□ -0.87
SCAF11-213ENST00000550629 NUDT12Q9BQG2 462 aa9.62□□□□□ -0.87
SCAF11-213ENST00000550629 SENP2Q9HC62 589 aa9.62□□□□□ -0.87
SCAF11-213ENST00000550629 SOGA1O94964 1423 aa9.62□□□□□ -0.87
SCAF11-213ENST00000550629 TARBP1Q13395 1621 aaKnown RBP9.61□□□□□ -0.87
SCAF11-213ENST00000550629 LILRB3O75022 631 aa9.61□□□□□ -0.87
SCAF11-213ENST00000550629 BRPF1P55201 1214 aaPredicted RBP9.61□□□□□ -0.87
SCAF11-213ENST00000550629 DESI1Q6ICB0 168 aa9.61□□□□□ -0.87
SCAF11-213ENST00000550629 HPS1Q92902 700 aa9.61□□□□□ -0.87
SCAF11-213ENST00000550629 WDR97A6NE52 1622 aa9.6□□□□□ -0.87
SCAF11-213ENST00000550629 NUTM2BA6NNL0 878 aaPredicted RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 NUTM2EB1AL46 878 aaPredicted RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 PRKCSHP14314 528 aaPredicted RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 SKOR1P84550 965 aa9.6□□□□□ -0.87
SCAF11-213ENST00000550629 SKIV2LQ15477 1246 aaKnown RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 NUTM2DQ5VT03 806 aaPredicted RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 NUTM2AQ8IVF1 878 aaPredicted RBP9.6□□□□□ -0.87
SCAF11-213ENST00000550629 ABCA10Q8WWZ4 1543 aa9.6□□□□□ -0.87
SCAF11-213ENST00000550629 ALDH1A1P00352 501 aa9.59□□□□□ -0.87
SCAF11-213ENST00000550629 CCNYL3P0C7X3 344 aa9.59□□□□□ -0.87
SCAF11-213ENST00000550629 PTPRNQ16849 979 aa9.59□□□□□ -0.87
SCAF11-213ENST00000550629 SH3D19Q5HYK7 790 aa9.59□□□□□ -0.87
SCAF11-213ENST00000550629 RTL5Q5HYW3 569 aaPredicted RBP9.59□□□□□ -0.87
SCAF11-213ENST00000550629 PTCRAQ6ISU1 281 aaPredicted RBP9.59□□□□□ -0.87
SCAF11-213ENST00000550629 SNRPBP14678 240 aaKnown RBP9.58□□□□□ -0.88
SCAF11-213ENST00000550629 PROCA1Q8NCQ7 364 aaPredicted RBP9.58□□□□□ -0.88
SCAF11-213ENST00000550629 EHBP1Q8NDI1 1231 aa9.58□□□□□ -0.88
SCAF11-213ENST00000550629 TRIM47Q96LD4 638 aa9.58□□□□□ -0.88
SCAF11-213ENST00000550629 KIFC2Q96AC6 838 aa9.57□□□□□ -0.88
SCAF11-213ENST00000550629 RAD54L2Q9Y4B4 1467 aa9.57□□□□□ -0.88
SCAF11-213ENST00000550629 LYPD8Q6UX82 237 aa9.56□□□□□ -0.88
SCAF11-213ENST00000550629 IL27Q8NEV9 243 aa9.56□□□□□ -0.88
SCAF11-213ENST00000550629 TSC1Q92574 1164 aa9.56□□□□□ -0.88
SCAF11-213ENST00000550629 EVA1BQ9NVM1 165 aa9.56□□□□□ -0.88
SCAF11-213ENST00000550629 FBXO31Q5XUX0 539 aaPredicted RBP9.55□□□□□ -0.88
SCAF11-213ENST00000550629 PER1O15534 1290 aaPredicted RBP9.54□□□□□ -0.88
SCAF11-213ENST00000550629 KCNH2Q12809 1159 aa9.54□□□□□ -0.88
SCAF11-213ENST00000550629 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.54□□□□□ -0.88
SCAF11-213ENST00000550629 ATP1B4Q9UN42 357 aaPredicted RBP9.54□□□□□ -0.88
SCAF11-213ENST00000550629 WASF2Q9Y6W5 498 aa9.54□□□□□ -0.88
SCAF11-213ENST00000550629 KIF27Q86VH2 1401 aa9.54□□□□□ -0.88
SCAF11-213ENST00000550629 ABCA5Q8WWZ7 1642 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms