RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SETD1AO15047 1707 aaKnown RBP14.42□□□□□ -0.1
CUX1-212ENST00000547394 HDGFP51858 240 aaKnown RBP14.42□□□□□ -0.1
CUX1-212ENST00000547394 ANP32EQ9BTT0 268 aa14.42□□□□□ -0.1
CUX1-212ENST00000547394 NINLQ9Y2I6 1382 aa14.42□□□□□ -0.1
CUX1-212ENST00000547394 CCDC61Q9Y6R9 512 aa14.42□□□□□ -0.1
CUX1-212ENST00000547394 MAPK8IP3Q9UPT6 1336 aa14.42□□□□□ -0.1
CUX1-212ENST00000547394 TMPOP42166 694 aaKnown RBP14.41□□□□□ -0.1
CUX1-212ENST00000547394 PLEKHF1Q96S99 279 aa14.41□□□□□ -0.1
CUX1-212ENST00000547394 LAS1LQ9Y4W2 734 aaKnown RBP14.41□□□□□ -0.1
CUX1-212ENST00000547394 ADAMTS13Q76LX8 1427 aa14.41□□□□□ -0.1
CUX1-212ENST00000547394 AMOTL2Q9Y2J4 779 aa14.41□□□□□ -0.1
CUX1-212ENST00000547394 USP32Q8NFA0 1604 aa14.41□□□□□ -0.1
CUX1-212ENST00000547394 PRKAR2BP31323 418 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 RIPK4P57078 832 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 PHACTR3Q96KR7 559 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 EID1Q9Y6B2 187 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 TRIM35Q9UPQ4 493 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 IQSEC2Q5JU85 1478 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 PLEKHG5O94827 1062 aa14.4□□□□□ -0.1
CUX1-212ENST00000547394 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.4□□□□□ -0.1
CUX1-212ENST00000547394 RLBP1P12271 317 aa14.39□□□□□ -0.11
CUX1-212ENST00000547394 PTPRUQ92729 1446 aa14.39□□□□□ -0.11
CUX1-212ENST00000547394 RARSP54136 660 aaKnown RBP14.39□□□□□ -0.11
CUX1-212ENST00000547394 UBR1Q8IWV7 1749 aa14.38□□□□□ -0.11
CUX1-212ENST00000547394 CPS1P31327 1500 aa14.38□□□□□ -0.11
CUX1-212ENST00000547394 RGS3P49796 1198 aa14.38□□□□□ -0.11
CUX1-212ENST00000547394 PHF23Q9BUL5 403 aaPredicted RBP14.38□□□□□ -0.11
CUX1-212ENST00000547394 EXOSC9Q06265 439 aaKnown RBP14.38□□□□□ -0.11
CUX1-212ENST00000547394 NUTM2GQ5VZR2 741 aa14.38□□□□□ -0.11
CUX1-212ENST00000547394 COL3A1P02461 1466 aaPredicted RBP14.38□□□□□ -0.11
CUX1-212ENST00000547394 COG3Q96JB2 828 aa14.37□□□□□ -0.11
CUX1-212ENST00000547394 ACEP12821 1306 aa14.37□□□□□ -0.11
CUX1-212ENST00000547394 FANCIQ9NVI1 1328 aa14.36□□□□□ -0.11
CUX1-212ENST00000547394 DLC1Q96QB1 1528 aa14.36□□□□□ -0.11
CUX1-212ENST00000547394 TCERG1O14776 1098 aaKnown RBP14.36□□□□□ -0.11
CUX1-212ENST00000547394 WDR63Q8IWG1 891 aa14.36□□□□□ -0.11
CUX1-212ENST00000547394 ELL2O00472 640 aaPredicted RBP14.35□□□□□ -0.11
CUX1-212ENST00000547394 IGHDP01880 384 aa14.35□□□□□ -0.11
CUX1-212ENST00000547394 CPSF1Q10570 1443 aaKnown RBP14.35□□□□□ -0.11
CUX1-212ENST00000547394 AEBP1Q8IUX7 1158 aa14.35□□□□□ -0.11
CUX1-212ENST00000547394 DCTN1Q14203 1278 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 FAM83GA6ND36 823 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 KCNA6P17658 529 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 PDE4AP27815 886 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 RSPH6AQ9H0K4 717 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 PLEKHG1Q9ULL1 1385 aa14.34□□□□□ -0.11
CUX1-212ENST00000547394 ATP7BP35670 1465 aa14.33□□□□□ -0.11
CUX1-212ENST00000547394 MYH16Q9H6N6 1097 aa14.33□□□□□ -0.11
CUX1-212ENST00000547394 KDM2BQ8NHM5 1336 aa14.33□□□□□ -0.12
CUX1-212ENST00000547394 EDC4Q6P2E9 1401 aaKnown RBP14.33□□□□□ -0.12
CUX1-212ENST00000547394 THEMISQ8N1K5 641 aaPredicted RBP14.32□□□□□ -0.12
CUX1-212ENST00000547394 SMC4Q9NTJ3 1288 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 C3P01024 1663 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 PNPLA6Q8IY17 1366 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.32□□□□□ -0.12
CUX1-212ENST00000547394 FAM135BQ49AJ0 1406 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 PAK3O75914 559 aaPredicted RBP14.32□□□□□ -0.12
CUX1-212ENST00000547394 IL13P35225 146 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 CCDC27Q2M243 656 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 NGEFQ8N5V2 710 aa14.32□□□□□ -0.12
CUX1-212ENST00000547394 TTC21BQ7Z4L5 1316 aa14.31□□□□□ -0.12
CUX1-212ENST00000547394 HSP90AB2PQ58FF8 381 aa14.31□□□□□ -0.12
CUX1-212ENST00000547394 NGDNQ8NEJ9 315 aaKnown RBP14.31□□□□□ -0.12
CUX1-212ENST00000547394 SSH1Q8WYL5 1049 aa14.31□□□□□ -0.12
CUX1-212ENST00000547394 MAP2P11137 1827 aaKnown RBP14.3□□□□□ -0.12
CUX1-212ENST00000547394 KIF20BQ96Q89 1820 aa14.3□□□□□ -0.12
CUX1-212ENST00000547394 TECPR2O15040 1411 aa14.3□□□□□ -0.12
CUX1-212ENST00000547394 LRRC7Q96NW7 1537 aa14.3□□□□□ -0.12
CUX1-212ENST00000547394 MED14O60244 1454 aa14.3□□□□□ -0.12
CUX1-212ENST00000547394 FCHSD2O94868 740 aa14.29□□□□□ -0.12
CUX1-212ENST00000547394 ERICH6Q7L0X2 663 aa14.29□□□□□ -0.12
CUX1-212ENST00000547394 C14orf37Q86TY3 774 aa14.29□□□□□ -0.12
CUX1-212ENST00000547394 CENPQQ7L2Z9 268 aaPredicted RBP14.28□□□□□ -0.12
CUX1-212ENST00000547394 PCDHB15Q9Y5E8 787 aa14.28□□□□□ -0.12
CUX1-212ENST00000547394 FER1L4A9Z1Z3 1794 aa14.28□□□□□ -0.12
CUX1-212ENST00000547394 NEFMP07197 916 aa14.28□□□□□ -0.12
CUX1-212ENST00000547394 SULT6B1Q6IMI4 303 aa14.28□□□□□ -0.12
CUX1-212ENST00000547394 TSPYL6Q8N831 410 aa14.28□□□□□ -0.12
CUX1-212ENST00000547394 EIF4A2Q14240 407 aaKnown RBP14.27□□□□□ -0.12
CUX1-212ENST00000547394 SIRT1Q96EB6 747 aa14.27□□□□□ -0.12
CUX1-212ENST00000547394 BACH2Q9BYV9 841 aa14.27□□□□□ -0.12
CUX1-212ENST00000547394 CDC42BPGQ6DT37 1551 aa14.27□□□□□ -0.12
CUX1-212ENST00000547394 ANKRD26Q9UPS8 1709 aa14.27□□□□□ -0.13
CUX1-212ENST00000547394 PDE3AQ14432 1141 aa14.27□□□□□ -0.13
CUX1-212ENST00000547394 FTSJ3Q8IY81 847 aaKnown RBP14.27□□□□□ -0.13
CUX1-212ENST00000547394 ZNF692Q9BU19 519 aaPredicted RBP14.27□□□□□ -0.13
CUX1-212ENST00000547394 TBX22Q9Y458 520 aa14.27□□□□□ -0.13
CUX1-212ENST00000547394 ADGRB2O60241 1585 aa14.26□□□□□ -0.13
CUX1-212ENST00000547394 NOB1Q9ULX3 412 aaKnown RBP14.26□□□□□ -0.13
CUX1-212ENST00000547394 TRIM27P14373 513 aa14.25□□□□□ -0.13
CUX1-212ENST00000547394 ANP32AP39687 249 aaKnown RBP14.25□□□□□ -0.13
CUX1-212ENST00000547394 NFE2L2Q16236 605 aa14.25□□□□□ -0.13
CUX1-212ENST00000547394 ZBTB7CA1YPR0 619 aa14.25□□□□□ -0.13
CUX1-212ENST00000547394 KRT24Q2M2I5 525 aa14.25□□□□□ -0.13
CUX1-212ENST00000547394 ITPRIPQ8IWB1 547 aa14.24□□□□□ -0.13
CUX1-212ENST00000547394 LTV1Q96GA3 475 aaPredicted RBP14.24□□□□□ -0.13
CUX1-212ENST00000547394 XPCQ01831 940 aaPredicted RBP14.24□□□□□ -0.13
CUX1-212ENST00000547394 BCL11AQ9H165 835 aa14.24□□□□□ -0.13
CUX1-212ENST00000547394 PLEKHG3A1L390 1219 aa14.24□□□□□ -0.13
CUX1-212ENST00000547394 ZKSCAN2Q63HK3 967 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms