RNA–Protein interactions for RNA: ENST00000545738.6

LIMS2-217, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 5 BASIC

Gene LIMS2, Length 1,730 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-217ENST00000545738 TERF2IPQ9NYB0 399 aa22.56■■□□□ 1.2
LIMS2-217ENST00000545738 TNS3Q68CZ2 1445 aa22.56■■□□□ 1.2
LIMS2-217ENST00000545738 SBNO1A3KN83 1393 aa22.56■■□□□ 1.2
LIMS2-217ENST00000545738 SPATA31A3Q5VYP0 1347 aa22.55■■□□□ 1.2
LIMS2-217ENST00000545738 MARF1Q9Y4F3 1742 aaKnown RBP22.55■■□□□ 1.2
LIMS2-217ENST00000545738 HDGFL2Q7Z4V5 671 aaPredicted RBP22.54■■□□□ 1.2
LIMS2-217ENST00000545738 ZNF692Q9BU19 519 aaPredicted RBP22.54■■□□□ 1.2
LIMS2-217ENST00000545738 TTC21BQ7Z4L5 1316 aa22.54■■□□□ 1.2
LIMS2-217ENST00000545738 EDC4Q6P2E9 1401 aaKnown RBP22.54■■□□□ 1.2
LIMS2-217ENST00000545738 NSD3Q9BZ95 1437 aa22.54■■□□□ 1.2
LIMS2-217ENST00000545738 PAK3O75914 559 aaPredicted RBP22.53■■□□□ 1.2
LIMS2-217ENST00000545738 ILDR1Q86SU0 546 aaPredicted RBP22.53■■□□□ 1.2
LIMS2-217ENST00000545738 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.52■■□□□ 1.2
LIMS2-217ENST00000545738 ZRANB1Q9UGI0 708 aa22.52■■□□□ 1.2
LIMS2-217ENST00000545738 PNPLA6Q8IY17 1366 aa22.51■■□□□ 1.19
LIMS2-217ENST00000545738 CRYBG1Q9Y4K1 1723 aa22.51■■□□□ 1.19
LIMS2-217ENST00000545738 NUTM2GQ5VZR2 741 aa22.51■■□□□ 1.19
LIMS2-217ENST00000545738 NME9Q86XW9 330 aa22.51■■□□□ 1.19
LIMS2-217ENST00000545738 SHPRHQ149N8 1683 aa22.5■■□□□ 1.19
LIMS2-217ENST00000545738 PER1O15534 1290 aaPredicted RBP22.5■■□□□ 1.19
LIMS2-217ENST00000545738 LRRC59Q96AG4 307 aaKnown RBP22.5■■□□□ 1.19
LIMS2-217ENST00000545738 MED1Q15648 1581 aaPredicted RBP22.49■■□□□ 1.19
LIMS2-217ENST00000545738 COL22A1Q8NFW1 1626 aaPredicted RBP22.49■■□□□ 1.19
LIMS2-217ENST00000545738 ABCA3Q99758 1704 aa22.48■■□□□ 1.19
LIMS2-217ENST00000545738 DDX10Q13206 875 aaKnown RBP22.48■■□□□ 1.19
LIMS2-217ENST00000545738 LMOD2Q6P5Q4 547 aa22.48■■□□□ 1.19
LIMS2-217ENST00000545738 BRD4O60885 1362 aaPredicted RBP22.47■■□□□ 1.19
LIMS2-217ENST00000545738 KIF20BQ96Q89 1820 aa22.47■■□□□ 1.19
LIMS2-217ENST00000545738 PLEKHG5O94827 1062 aa22.46■■□□□ 1.19
LIMS2-217ENST00000545738 ABTB2Q8N961 1025 aa22.46■■□□□ 1.19
LIMS2-217ENST00000545738 CABLES1Q8TDN4 633 aa22.46■■□□□ 1.19
LIMS2-217ENST00000545738 USP54Q70EL1 1684 aa22.46■■□□□ 1.19
LIMS2-217ENST00000545738 FYB1O15117 783 aa22.45■■□□□ 1.19
LIMS2-217ENST00000545738 TTC21AQ8NDW8 1320 aa22.45■■□□□ 1.19
LIMS2-217ENST00000545738 JCADQ9P266 1359 aa22.45■■□□□ 1.18
LIMS2-217ENST00000545738 PHRF1Q9P1Y6 1649 aaKnown RBP22.44■■□□□ 1.18
LIMS2-217ENST00000545738 ARHGEF10O15013 1369 aa22.44■■□□□ 1.18
LIMS2-217ENST00000545738 OVOS2A0A0J9YW53 1432 aa22.44■■□□□ 1.18
LIMS2-217ENST00000545738 OVOS2Q6IE36 1432 aa22.44■■□□□ 1.18
LIMS2-217ENST00000545738 AMER1Q5JTC6 1135 aaPredicted RBP22.43■■□□□ 1.18
LIMS2-217ENST00000545738 GGNBP2Q9H3C7 697 aa22.43■■□□□ 1.18
LIMS2-217ENST00000545738 LRP6O75581 1613 aa22.42■■□□□ 1.18
LIMS2-217ENST00000545738 USP31Q70CQ4 1352 aa22.42■■□□□ 1.18
LIMS2-217ENST00000545738 USP19O94966 1318 aa22.41■■□□□ 1.18
LIMS2-217ENST00000545738 NLRP6P59044 892 aa22.41■■□□□ 1.18
LIMS2-217ENST00000545738 SLIT3O75094 1523 aa22.41■■□□□ 1.18
LIMS2-217ENST00000545738 ANKRD26Q9UPS8 1709 aa22.39■■□□□ 1.18
LIMS2-217ENST00000545738 CGNL1Q0VF96 1302 aa22.38■■□□□ 1.17
LIMS2-217ENST00000545738 FBLN1P23142 703 aa22.38■■□□□ 1.17
LIMS2-217ENST00000545738 KNSTRNQ9Y448 316 aa22.37■■□□□ 1.17
LIMS2-217ENST00000545738 NFAT5O94916 1531 aa22.37■■□□□ 1.17
LIMS2-217ENST00000545738 NLRP13Q86W25 1043 aa22.36■■□□□ 1.17
LIMS2-217ENST00000545738 NUTM2BA6NNL0 878 aaPredicted RBP22.34■■□□□ 1.17
LIMS2-217ENST00000545738 NUTM2EB1AL46 878 aaPredicted RBP22.34■■□□□ 1.17
LIMS2-217ENST00000545738 SOX12O15370 315 aa22.34■■□□□ 1.17
LIMS2-217ENST00000545738 CNGB1Q14028 1251 aaPredicted RBP22.34■■□□□ 1.17
LIMS2-217ENST00000545738 NUTM2AQ8IVF1 878 aaPredicted RBP22.34■■□□□ 1.17
LIMS2-217ENST00000545738 CC2D1BQ5T0F9 858 aaKnown RBP22.34■■□□□ 1.17
LIMS2-217ENST00000545738 GCP02774 474 aa22.33■■□□□ 1.17
LIMS2-217ENST00000545738 SPATA31A6Q5VVP1 1343 aa22.33■■□□□ 1.16
LIMS2-217ENST00000545738 COG3Q96JB2 828 aa22.32■■□□□ 1.16
LIMS2-217ENST00000545738 NPC1L1Q9UHC9 1359 aa22.31■■□□□ 1.16
LIMS2-217ENST00000545738 NSD2O96028 1365 aa22.3■■□□□ 1.16
LIMS2-217ENST00000545738 LTN1O94822 1766 aa22.29■■□□□ 1.16
LIMS2-217ENST00000545738 ADAMTS2O95450 1211 aa22.29■■□□□ 1.16
LIMS2-217ENST00000545738 ZC3H6P61129 1189 aaKnown RBP22.29■■□□□ 1.16
LIMS2-217ENST00000545738 KIAA0232Q92628 1395 aa22.29■■□□□ 1.16
LIMS2-217ENST00000545738 TNNT2P45379 298 aaPredicted RBP22.28■■□□□ 1.16
LIMS2-217ENST00000545738 PEAK1Q9H792 1746 aa22.27■■□□□ 1.16
LIMS2-217ENST00000545738 COL18A1P39060 1754 aa22.27■■□□□ 1.16
LIMS2-217ENST00000545738 MAP2P11137 1827 aaKnown RBP22.26■■□□□ 1.15
LIMS2-217ENST00000545738 RRS1Q15050 365 aaKnown RBP22.26■■□□□ 1.15
LIMS2-217ENST00000545738 FAM83GA6ND36 823 aa22.25■■□□□ 1.15
LIMS2-217ENST00000545738 HAP1P54257 671 aaPredicted RBP22.25■■□□□ 1.15
LIMS2-217ENST00000545738 CHRNA2Q15822 529 aa22.25■■□□□ 1.15
LIMS2-217ENST00000545738 CPDO75976 1380 aa22.25■■□□□ 1.15
LIMS2-217ENST00000545738 LMO7Q8WWI1 1683 aa22.25■■□□□ 1.15
LIMS2-217ENST00000545738 ARHGEF25Q86VW2 580 aa22.24■■□□□ 1.15
LIMS2-217ENST00000545738 RGPD5Q99666 1765 aa22.24■■□□□ 1.15
LIMS2-217ENST00000545738 PLCH1Q4KWH8 1693 aa22.23■■□□□ 1.15
LIMS2-217ENST00000545738 MAP3K19Q56UN5 1328 aa22.23■■□□□ 1.15
LIMS2-217ENST00000545738 MORC1Q86VD1 984 aa22.23■■□□□ 1.15
LIMS2-217ENST00000545738 KCNH5Q8NCM2 988 aa22.23■■□□□ 1.15
LIMS2-217ENST00000545738 PARD3Q8TEW0 1356 aa22.23■■□□□ 1.15
LIMS2-217ENST00000545738 EMILIN1Q9Y6C2 1016 aa22.22■■□□□ 1.15
LIMS2-217ENST00000545738 AATKQ6ZMQ8 1374 aa22.21■■□□□ 1.15
LIMS2-217ENST00000545738 AXIN2Q9Y2T1 843 aa22.21■■□□□ 1.15
LIMS2-217ENST00000545738 COL14A1Q05707 1796 aaKnown RBP22.21■■□□□ 1.15
LIMS2-217ENST00000545738 CAMTA1Q9Y6Y1 1673 aa22.21■■□□□ 1.15
LIMS2-217ENST00000545738 C8orf37Q96NL8 207 aa22.2■■□□□ 1.14
LIMS2-217ENST00000545738 ZBTB7CA1YPR0 619 aa22.2■■□□□ 1.14
LIMS2-217ENST00000545738 PRDM11Q9NQV5 511 aa22.2■■□□□ 1.14
LIMS2-217ENST00000545738 POLKQ9UBT6 870 aa22.2■■□□□ 1.14
LIMS2-217ENST00000545738 SLIT2O94813 1529 aa22.19■■□□□ 1.14
LIMS2-217ENST00000545738 NRAPQ86VF7 1730 aa22.18■■□□□ 1.14
LIMS2-217ENST00000545738 SMG6Q86US8 1419 aaKnown RBP22.17■■□□□ 1.14
LIMS2-217ENST00000545738 BCL9LQ86UU0 1499 aa22.16■■□□□ 1.14
LIMS2-217ENST00000545738 MEX3CQ5U5Q3 659 aaKnown RBP22.16■■□□□ 1.14
LIMS2-217ENST00000545738 PRKRIP1Q9H875 184 aaPredicted RBP22.15■■□□□ 1.14
LIMS2-217ENST00000545738 NWD2Q9ULI1 1742 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms