RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PUS7Q96PZ0 661 aaKnown RBP6.97□□□□□ -1.29
USP28-213ENST00000544967 TCERG1O14776 1098 aaKnown RBP6.97□□□□□ -1.29
USP28-213ENST00000544967 POLR3GLQ9BT43 218 aa6.97□□□□□ -1.29
USP28-213ENST00000544967 KIF20BQ96Q89 1820 aa6.96□□□□□ -1.29
USP28-213ENST00000544967 IL27Q8NEV9 243 aa6.96□□□□□ -1.29
USP28-213ENST00000544967 DDRGK1Q96HY6 314 aa6.96□□□□□ -1.29
USP28-213ENST00000544967 EIF3AQ14152 1382 aaKnown RBP6.96□□□□□ -1.3
USP28-213ENST00000544967 L3MBTL2Q969R5 705 aa6.96□□□□□ -1.3
USP28-213ENST00000544967 ZNF335Q9H4Z2 1342 aaPredicted RBP6.96□□□□□ -1.3
USP28-213ENST00000544967 BRD4O60885 1362 aaPredicted RBP6.96□□□□□ -1.3
USP28-213ENST00000544967 TONSLQ96HA7 1378 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 TMEM94Q12767 1356 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 NBR1Q14596 966 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 ILDR1Q86SU0 546 aaPredicted RBP6.95□□□□□ -1.3
USP28-213ENST00000544967 WNK3Q9BYP7 1800 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 SSH2Q76I76 1423 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 C1orf167Q5SNV9 1468 aa6.95□□□□□ -1.3
USP28-213ENST00000544967 PIK3C2AO00443 1686 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 CD163L1Q9NR16 1453 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 NRAPQ86VF7 1730 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 NWD2Q9ULI1 1742 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 ARID3AQ99856 593 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 POLR3AO14802 1390 aaPredicted RBP6.94□□□□□ -1.3
USP28-213ENST00000544967 INSRP06213 1382 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 HMGB1P09429 215 aaKnown RBP6.94□□□□□ -1.3
USP28-213ENST00000544967 CAMTA1Q9Y6Y1 1673 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 SLIT3O75094 1523 aa6.94□□□□□ -1.3
USP28-213ENST00000544967 NBPF8Q3BBV2 869 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 PAXIP1Q6ZW49 1069 aaPredicted RBP6.93□□□□□ -1.3
USP28-213ENST00000544967 GSE1Q14687 1217 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 CERKQ8TCT0 537 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 NINLQ9Y2I6 1382 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 PLCH1Q4KWH8 1693 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 LMO7Q8WWI1 1683 aa6.93□□□□□ -1.3
USP28-213ENST00000544967 SENP3Q9H4L4 574 aaPredicted RBP6.92□□□□□ -1.3
USP28-213ENST00000544967 PLEKHH1Q9ULM0 1364 aa6.92□□□□□ -1.3
USP28-213ENST00000544967 NUDCQ9Y266 331 aa6.92□□□□□ -1.3
USP28-213ENST00000544967 CPSF1Q10570 1443 aaKnown RBP6.92□□□□□ -1.3
USP28-213ENST00000544967 SIN3AQ96ST3 1273 aa6.92□□□□□ -1.3
USP28-213ENST00000544967 COL18A1P39060 1754 aa6.92□□□□□ -1.3
USP28-213ENST00000544967 AMOTL2Q9Y2J4 779 aa6.92□□□□□ -1.3
USP28-213ENST00000544967 FAM208AQ9UK61 1670 aaKnown RBP6.92□□□□□ -1.3
USP28-213ENST00000544967 STAG3Q9UJ98 1225 aa6.91□□□□□ -1.3
USP28-213ENST00000544967 KTN1Q86UP2 1357 aaKnown RBP6.91□□□□□ -1.3
USP28-213ENST00000544967 B4GALNT3Q6L9W6 998 aa6.91□□□□□ -1.3
USP28-213ENST00000544967 CFAP70Q5T0N1 1121 aa6.91□□□□□ -1.3
USP28-213ENST00000544967 DCAF11Q8TEB1 546 aa6.91□□□□□ -1.3
USP28-213ENST00000544967 MSH6P52701 1360 aa6.9□□□□□ -1.3
USP28-213ENST00000544967 NEFMP07197 916 aa6.9□□□□□ -1.3
USP28-213ENST00000544967 ZNF326Q5BKZ1 582 aaKnown RBP6.9□□□□□ -1.3
USP28-213ENST00000544967 PRKRIP1Q9H875 184 aaPredicted RBP6.9□□□□□ -1.3
USP28-213ENST00000544967 BCCIPQ9P287 314 aaKnown RBP eCLIP6.9□□□□□ -1.31
USP28-213ENST00000544967 ROCK2O75116 1388 aaKnown RBP6.9□□□□□ -1.31
USP28-213ENST00000544967 ZNF428Q96B54 188 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 TESK2Q96S53 571 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 BRPF3Q9ULD4 1205 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 SBNO1A3KN83 1393 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 C19orf44Q9H6X5 657 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 CCDC7Q96M83 1385 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 SLC26A8Q96RN1 970 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 BACH2Q9BYV9 841 aa6.89□□□□□ -1.31
USP28-213ENST00000544967 NFAT5O94916 1531 aa6.88□□□□□ -1.31
USP28-213ENST00000544967 COL14A1Q05707 1796 aaKnown RBP6.88□□□□□ -1.31
USP28-213ENST00000544967 FBXO41Q8TF61 875 aa6.88□□□□□ -1.31
USP28-213ENST00000544967 A0A0U1RQG5 324 aaPredicted RBP6.88□□□□□ -1.31
USP28-213ENST00000544967 RRP9O43818 475 aaKnown RBP6.88□□□□□ -1.31
USP28-213ENST00000544967 USP47Q96K76 1375 aa6.87□□□□□ -1.31
USP28-213ENST00000544967 NBPF1Q3BBV0 1214 aa6.87□□□□□ -1.31
USP28-213ENST00000544967 C1orf115Q9H7X2 142 aa6.87□□□□□ -1.31
USP28-213ENST00000544967 SOS2Q07890 1332 aaPredicted RBP6.87□□□□□ -1.31
USP28-213ENST00000544967 CENPJQ9HC77 1338 aaPredicted RBP6.87□□□□□ -1.31
USP28-213ENST00000544967 AAMPQ13685 434 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 LTN1O94822 1766 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 VIRMAQ69YN4 1812 aaKnown RBP6.86□□□□□ -1.31
USP28-213ENST00000544967 ATAD2Q6PL18 1390 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 PLEKHG3A1L390 1219 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 EIF4G2P78344 907 aaKnown RBP eCLIP6.86□□□□□ -1.31
USP28-213ENST00000544967 RGL3Q3MIN7 710 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 CADPS2Q86UW7 1296 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 RGPD1P0DJD0 1748 aa6.86□□□□□ -1.31
USP28-213ENST00000544967 CHGAP10645 457 aaKnown RBP6.85□□□□□ -1.31
USP28-213ENST00000544967 PRR36Q9H6K5 1346 aa6.85□□□□□ -1.31
USP28-213ENST00000544967 PPP4R3CPQ6ZMV5 832 aa6.85□□□□□ -1.31
USP28-213ENST00000544967 ZBTB4Q9P1Z0 1013 aaPredicted RBP6.85□□□□□ -1.31
USP28-213ENST00000544967 USP31Q70CQ4 1352 aa6.85□□□□□ -1.31
USP28-213ENST00000544967 PDE4AP27815 886 aa6.85□□□□□ -1.31
USP28-213ENST00000544967 PDE3BQ13370 1112 aa6.85□□□□□ -1.31
USP28-213ENST00000544967 USP6P35125 1406 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 TNS3Q68CZ2 1445 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 WASLO00401 505 aaPredicted RBP6.84□□□□□ -1.31
USP28-213ENST00000544967 THSD7AQ9UPZ6 1657 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 L1TD1Q5T7N2 865 aaKnown RBP6.84□□□□□ -1.31
USP28-213ENST00000544967 FOXD4L1Q9NU39 408 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 OVOS2A0A0J9YW53 1432 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 OVOS2Q6IE36 1432 aa6.84□□□□□ -1.31
USP28-213ENST00000544967 ZBTB7CA1YPR0 619 aa6.84□□□□□ -1.32
USP28-213ENST00000544967 NUTM2DQ5VT03 806 aaPredicted RBP6.84□□□□□ -1.32
USP28-213ENST00000544967 ZFP91Q96JP5 570 aaPredicted RBP6.84□□□□□ -1.32
USP28-213ENST00000544967 PRAM1Q96QH2 718 aa6.84□□□□□ -1.32
USP28-213ENST00000544967 DISP3Q9P2K9 1392 aa6.84□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms