RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 KIF20BQ96Q89 1820 aa18.06■□□□□ 0.48
MSH2-206ENST00000543555 METP08581 1390 aa18.06■□□□□ 0.48
MSH2-206ENST00000543555 PDE4AP27815 886 aa18.06■□□□□ 0.48
MSH2-206ENST00000543555 ANP32AP39687 249 aaKnown RBP18.06■□□□□ 0.48
MSH2-206ENST00000543555 NCKAP5LQ9HCH0 1330 aa18.04■□□□□ 0.48
MSH2-206ENST00000543555 PDE3AQ14432 1141 aa18.04■□□□□ 0.48
MSH2-206ENST00000543555 U2SURPO15042 1029 aaKnown RBP18.04■□□□□ 0.48
MSH2-206ENST00000543555 HDGFP51858 240 aaKnown RBP18.04■□□□□ 0.48
MSH2-206ENST00000543555 PLEKHF1Q96S99 279 aa18.04■□□□□ 0.48
MSH2-206ENST00000543555 BACH2Q9BYV9 841 aa18.04■□□□□ 0.48
MSH2-206ENST00000543555 UBR1Q8IWV7 1749 aa18.03■□□□□ 0.48
MSH2-206ENST00000543555 PNPLA6Q8IY17 1366 aa18.03■□□□□ 0.48
MSH2-206ENST00000543555 SKAP1Q86WV1 359 aa18.02■□□□□ 0.48
MSH2-206ENST00000543555 KNDC1Q76NI1 1749 aa18.02■□□□□ 0.48
MSH2-206ENST00000543555 WASLO00401 505 aaPredicted RBP18.02■□□□□ 0.48
MSH2-206ENST00000543555 RARSP54136 660 aaKnown RBP18.02■□□□□ 0.48
MSH2-206ENST00000543555 TECPR2O15040 1411 aa18.02■□□□□ 0.47
MSH2-206ENST00000543555 MYH16Q9H6N6 1097 aa18.01■□□□□ 0.47
MSH2-206ENST00000543555 FAM135BQ49AJ0 1406 aa18.01■□□□□ 0.47
MSH2-206ENST00000543555 CANXP27824 592 aaKnown RBP18.01■□□□□ 0.47
MSH2-206ENST00000543555 DIAPH1O60610 1272 aaKnown RBP18■□□□□ 0.47
MSH2-206ENST00000543555 SIRT1Q96EB6 747 aa18■□□□□ 0.47
MSH2-206ENST00000543555 NOP58Q9Y2X3 529 aaKnown RBP18■□□□□ 0.47
MSH2-206ENST00000543555 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18■□□□□ 0.47
MSH2-206ENST00000543555 IPO9Q96P70 1041 aaKnown RBP18■□□□□ 0.47
MSH2-206ENST00000543555 CPSF1Q10570 1443 aaKnown RBP18■□□□□ 0.47
MSH2-206ENST00000543555 NUTM2FA1L443 756 aa17.99■□□□□ 0.47
MSH2-206ENST00000543555 PPIP5K1Q6PFW1 1433 aa17.99■□□□□ 0.47
MSH2-206ENST00000543555 TMPOP42166 694 aaKnown RBP17.99■□□□□ 0.47
MSH2-206ENST00000543555 ANKLE2Q86XL3 938 aa17.99■□□□□ 0.47
MSH2-206ENST00000543555 MAPK8IP3Q9UPT6 1336 aa17.99■□□□□ 0.47
MSH2-206ENST00000543555 CPS1P31327 1500 aa17.99■□□□□ 0.47
MSH2-206ENST00000543555 CEP170BQ9Y4F5 1589 aaPredicted RBP17.98■□□□□ 0.47
MSH2-206ENST00000543555 EDC4Q6P2E9 1401 aaKnown RBP17.98■□□□□ 0.47
MSH2-206ENST00000543555 CDC42BPGQ6DT37 1551 aa17.97■□□□□ 0.47
MSH2-206ENST00000543555 PANK1Q8TE04 598 aa17.97■□□□□ 0.47
MSH2-206ENST00000543555 FRAT1Q92837 279 aaPredicted RBP17.97■□□□□ 0.47
MSH2-206ENST00000543555 TRIM35Q9UPQ4 493 aa17.96■□□□□ 0.47
MSH2-206ENST00000543555 COG6Q9Y2V7 657 aa17.96■□□□□ 0.47
MSH2-206ENST00000543555 SETD1BQ9UPS6 1966 aaKnown RBP17.96■□□□□ 0.46
MSH2-206ENST00000543555 PNNQ9H307 717 aaKnown RBP17.96■□□□□ 0.46
MSH2-206ENST00000543555 NUDT16Q96DE0 195 aaKnown RBP17.95■□□□□ 0.46
MSH2-206ENST00000543555 POLKQ9UBT6 870 aa17.95■□□□□ 0.46
MSH2-206ENST00000543555 CLUAP1Q96AJ1 413 aa17.95■□□□□ 0.46
MSH2-206ENST00000543555 ADAMTS13Q76LX8 1427 aa17.94■□□□□ 0.46
MSH2-206ENST00000543555 PAK3O75914 559 aaPredicted RBP17.93■□□□□ 0.46
MSH2-206ENST00000543555 CT47B1P0C2W7 299 aaPredicted RBP17.93■□□□□ 0.46
MSH2-206ENST00000543555 CCDC61Q9Y6R9 512 aa17.93■□□□□ 0.46
MSH2-206ENST00000543555 IL16Q14005 1332 aa17.93■□□□□ 0.46
MSH2-206ENST00000543555 AMOTL2Q9Y2J4 779 aa17.93■□□□□ 0.46
MSH2-206ENST00000543555 NPM2Q86SE8 214 aaKnown RBP17.93■□□□□ 0.46
MSH2-206ENST00000543555 BCL2L13Q9BXK5 485 aa17.93■□□□□ 0.46
MSH2-206ENST00000543555 LRRC7Q96NW7 1537 aa17.92■□□□□ 0.46
MSH2-206ENST00000543555 FCHSD2O94868 740 aa17.92■□□□□ 0.46
MSH2-206ENST00000543555 FBLN1P23142 703 aa17.92■□□□□ 0.46
MSH2-206ENST00000543555 TSR2Q969E8 191 aaKnown RBP17.92■□□□□ 0.46
MSH2-206ENST00000543555 MON2Q7Z3U7 1717 aa17.92■□□□□ 0.46
MSH2-206ENST00000543555 PPM1GO15355 546 aaPredicted RBP17.91■□□□□ 0.46
MSH2-206ENST00000543555 IGHDP01880 384 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 RIPK4P57078 832 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 AAMPQ13685 434 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 NME9Q86XW9 330 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 ROBO2Q9HCK4 1378 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 ZBTB47Q9UFB7 747 aaPredicted RBP17.91■□□□□ 0.46
MSH2-206ENST00000543555 PLEKHG1Q9ULL1 1385 aa17.91■□□□□ 0.46
MSH2-206ENST00000543555 RLBP1P12271 317 aa17.9■□□□□ 0.46
MSH2-206ENST00000543555 KCNA6P17658 529 aa17.9■□□□□ 0.46
MSH2-206ENST00000543555 RSPH6AQ9H0K4 717 aa17.9■□□□□ 0.46
MSH2-206ENST00000543555 TNNQ9UQP3 1299 aa17.9■□□□□ 0.46
MSH2-206ENST00000543555 AATKQ6ZMQ8 1374 aa17.9■□□□□ 0.46
MSH2-206ENST00000543555 EXOSC9Q06265 439 aaKnown RBP17.89■□□□□ 0.45
MSH2-206ENST00000543555 CDK12Q9NYV4 1490 aaPredicted RBP17.89■□□□□ 0.45
MSH2-206ENST00000543555 MAP2P11137 1827 aaKnown RBP17.89■□□□□ 0.45
MSH2-206ENST00000543555 PRR36Q9H6K5 1346 aa17.89■□□□□ 0.45
MSH2-206ENST00000543555 AKAP12Q02952 1782 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 EMILIN1Q9Y6C2 1016 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 PRKAR2BP31323 418 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 ZRANB1Q9UGI0 708 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 ARHGAP23Q9P227 1491 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 PTPRUQ92729 1446 aa17.88■□□□□ 0.45
MSH2-206ENST00000543555 ITSN1Q15811 1721 aa17.87■□□□□ 0.45
MSH2-206ENST00000543555 RGS3P49796 1198 aa17.87■□□□□ 0.45
MSH2-206ENST00000543555 FAM161AQ3B820 660 aa17.87■□□□□ 0.45
MSH2-206ENST00000543555 COG3Q96JB2 828 aa17.87■□□□□ 0.45
MSH2-206ENST00000543555 ZNF692Q9BU19 519 aaPredicted RBP17.87■□□□□ 0.45
MSH2-206ENST00000543555 SLIT1O75093 1534 aa17.87■□□□□ 0.45
MSH2-206ENST00000543555 ZKSCAN2Q63HK3 967 aa17.86■□□□□ 0.45
MSH2-206ENST00000543555 NEFMP07197 916 aa17.86■□□□□ 0.45
MSH2-206ENST00000543555 C8orf34Q49A92 452 aa17.85■□□□□ 0.45
MSH2-206ENST00000543555 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.85■□□□□ 0.45
MSH2-206ENST00000543555 IL13P35225 146 aa17.85■□□□□ 0.45
MSH2-206ENST00000543555 SMC4Q9NTJ3 1288 aa17.85■□□□□ 0.45
MSH2-206ENST00000543555 TBX22Q9Y458 520 aa17.85■□□□□ 0.45
MSH2-206ENST00000543555 PMFBP1Q8TBY8 1022 aa17.84■□□□□ 0.45
MSH2-206ENST00000543555 HMOX1P09601 288 aa17.83■□□□□ 0.45
MSH2-206ENST00000543555 MVPQ14764 893 aaKnown RBP17.83■□□□□ 0.45
MSH2-206ENST00000543555 SSH1Q8WYL5 1049 aa17.83■□□□□ 0.45
MSH2-206ENST00000543555 DZIP1LQ8IYY4 767 aaKnown RBP17.83■□□□□ 0.44
MSH2-206ENST00000543555 PCDHB15Q9Y5E8 787 aa17.83■□□□□ 0.44
MSH2-206ENST00000543555 TOPAZ1Q8N9V7 1692 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms