RNA–Protein interactions for RNA: ENST00000542717.1

CHD4-209, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 3

Gene CHD4, Length 204 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-209ENST00000542717 KIF15Q9NS87 1388 aa5.27□□□□□ -1.57
CHD4-209ENST00000542717 YBX3P16989 372 aaKnown RBP eCLIP5.26□□□□□ -1.57
CHD4-209ENST00000542717 SLC15A2Q16348 729 aa5.26□□□□□ -1.57
CHD4-209ENST00000542717 ZNF326Q5BKZ1 582 aaKnown RBP5.26□□□□□ -1.57
CHD4-209ENST00000542717 SGIP1Q9BQI5 828 aa5.26□□□□□ -1.57
CHD4-209ENST00000542717 NEXMIFQ5QGS0 1516 aa5.26□□□□□ -1.57
CHD4-209ENST00000542717 CCDC144AA2RUR9 1427 aa5.25□□□□□ -1.57
CHD4-209ENST00000542717 ERBINQ96RT1 1412 aa5.25□□□□□ -1.57
CHD4-209ENST00000542717 PLSCR1O15162 318 aa5.25□□□□□ -1.57
CHD4-209ENST00000542717 C16orf71Q8IYS4 520 aaPredicted RBP5.25□□□□□ -1.57
CHD4-209ENST00000542717 NLGN2Q8NFZ4 835 aa5.25□□□□□ -1.57
CHD4-209ENST00000542717 PRDM11Q9NQV5 511 aa5.25□□□□□ -1.57
CHD4-209ENST00000542717 THSD7AQ9UPZ6 1657 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 SPATA31A1Q5TZJ5 1347 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 CEP162Q5TB80 1403 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 TNS3Q68CZ2 1445 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 LMTK2Q8IWU2 1503 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 WDR90Q96KV7 1748 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 C11orf95C9JLR9 678 aaPredicted RBP5.24□□□□□ -1.57
CHD4-209ENST00000542717 EVA1CP58658 441 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 PMFBP1Q8TBY8 1022 aa5.24□□□□□ -1.57
CHD4-209ENST00000542717 USP19O94966 1318 aa5.23□□□□□ -1.57
CHD4-209ENST00000542717 NRAPQ86VF7 1730 aa5.23□□□□□ -1.57
CHD4-209ENST00000542717 TXNRD1Q16881 649 aa5.23□□□□□ -1.57
CHD4-209ENST00000542717 ARHGEF10O15013 1369 aa5.23□□□□□ -1.57
CHD4-209ENST00000542717 ROBO2Q9HCK4 1378 aa5.23□□□□□ -1.57
CHD4-209ENST00000542717 RRBP1Q9P2E9 1410 aaKnown RBP5.23□□□□□ -1.57
CHD4-209ENST00000542717 ADCY9O60503 1353 aa5.22□□□□□ -1.57
CHD4-209ENST00000542717 PROM2Q8N271 834 aa5.22□□□□□ -1.57
CHD4-209ENST00000542717 TECPR2O15040 1411 aa5.22□□□□□ -1.57
CHD4-209ENST00000542717 CCDC85CA6NKD9 419 aa5.21□□□□□ -1.58
CHD4-209ENST00000542717 CFAP44Q96MT7 982 aa5.21□□□□□ -1.58
CHD4-209ENST00000542717 GOLGB1Q14789 3259 aaKnown RBP5.21□□□□□ -1.58
CHD4-209ENST00000542717 COL14A1Q05707 1796 aaKnown RBP5.21□□□□□ -1.58
CHD4-209ENST00000542717 HFM1A2PYH4 1435 aa5.21□□□□□ -1.58
CHD4-209ENST00000542717 CROCC2H7BZ55 1655 aa5.21□□□□□ -1.58
CHD4-209ENST00000542717 DHX57Q6P158 1386 aaKnown RBP5.2□□□□□ -1.58
CHD4-209ENST00000542717 NRXN3Q9Y4C0 1643 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 CHRNA2Q15822 529 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 BARGINQ6ZT62 677 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 TCP11L2Q8N4U5 519 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 RBM46Q8TBY0 533 aaKnown RBP5.2□□□□□ -1.58
CHD4-209ENST00000542717 ABHD8Q96I13 439 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 CHIC2Q9UKJ5 165 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 PHF8Q9UPP1 1060 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 OVOS2A0A0G2JMS6 1433 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 OVOS2A0A0J9YW53 1432 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 OVOS2Q6IE36 1432 aa5.2□□□□□ -1.58
CHD4-209ENST00000542717 FSTL1Q12841 308 aa5.19□□□□□ -1.58
CHD4-209ENST00000542717 PTF1AQ7RTS3 328 aa5.19□□□□□ -1.58
CHD4-209ENST00000542717 SLC16A10Q8TF71 515 aa5.19□□□□□ -1.58
CHD4-209ENST00000542717 NMRK2Q9NPI5 230 aa5.19□□□□□ -1.58
CHD4-209ENST00000542717 SBNO1A3KN83 1393 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 ABCA3Q99758 1704 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 CDC42BPGQ6DT37 1551 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 NAIPQ13075 1403 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 MYOM3Q5VTT5 1437 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 AIDAQ96BJ3 306 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 PRDM10Q9NQV6 1147 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 RGPD3A6NKT7 1758 aaPredicted RBP5.18□□□□□ -1.58
CHD4-209ENST00000542717 RGPD4Q7Z3J3 1758 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 KIF1AQ12756 1690 aa5.18□□□□□ -1.58
CHD4-209ENST00000542717 FOXN1O15353 648 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 MSH5O43196 834 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 PAK3O75914 559 aaPredicted RBP5.17□□□□□ -1.58
CHD4-209ENST00000542717 DDB1Q16531 1140 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 LARP1Q6PKG0 1096 aaKnown RBP5.17□□□□□ -1.58
CHD4-209ENST00000542717 WAPLQ7Z5K2 1190 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 STK26Q9P289 416 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 PCNTO95613 3336 aa5.17□□□□□ -1.58
CHD4-209ENST00000542717 ANKRD30AQ9BXX3 1397 aa5.16□□□□□ -1.58
CHD4-209ENST00000542717 CTCFP49711 727 aaPredicted RBP5.16□□□□□ -1.58
CHD4-209ENST00000542717 ZC3H6P61129 1189 aaKnown RBP5.16□□□□□ -1.58
CHD4-209ENST00000542717 THRAP3Q9Y2W1 955 aaKnown RBP5.16□□□□□ -1.58
CHD4-209ENST00000542717 TULP4Q9NRJ4 1543 aa5.16□□□□□ -1.58
CHD4-209ENST00000542717 KIAA0232Q92628 1395 aa5.16□□□□□ -1.58
CHD4-209ENST00000542717 TOPAZ1Q8N9V7 1692 aa5.15□□□□□ -1.58
CHD4-209ENST00000542717 KIAA1210Q9ULL0 1709 aa5.15□□□□□ -1.58
CHD4-209ENST00000542717 RGS19P49795 217 aa5.15□□□□□ -1.59
CHD4-209ENST00000542717 ZNF827Q17R98 1081 aa5.15□□□□□ -1.59
CHD4-209ENST00000542717 SMC1BQ8NDV3 1235 aa5.15□□□□□ -1.59
CHD4-209ENST00000542717 TFCP2L1Q9NZI6 479 aa5.15□□□□□ -1.59
CHD4-209ENST00000542717 GPRASP1Q5JY77 1395 aa5.15□□□□□ -1.59
CHD4-209ENST00000542717 SSH2Q76I76 1423 aa5.14□□□□□ -1.59
CHD4-209ENST00000542717 ARHGEF28Q8N1W1 1705 aaKnown RBP5.14□□□□□ -1.59
CHD4-209ENST00000542717 VGFO15240 615 aaPredicted RBP5.14□□□□□ -1.59
CHD4-209ENST00000542717 LBX1P52954 281 aa5.14□□□□□ -1.59
CHD4-209ENST00000542717 HIRIP3Q9BW71 556 aaPredicted RBP5.14□□□□□ -1.59
CHD4-209ENST00000542717 CD2APQ9Y5K6 639 aa5.14□□□□□ -1.59
CHD4-209ENST00000542717 IQGAP3Q86VI3 1631 aa5.14□□□□□ -1.59
CHD4-209ENST00000542717 ZBTB7CA1YPR0 619 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 MSL1Q68DK7 614 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 MKRN1Q9UHC7 482 aaKnown RBP5.13□□□□□ -1.59
CHD4-209ENST00000542717 IGSF1Q8N6C5 1336 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 SBF2Q86WG5 1849 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 PRAG1Q86YV5 1406 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 ATP7BP35670 1465 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 NRXN1Q9ULB1 1477 aa5.13□□□□□ -1.59
CHD4-209ENST00000542717 MARCH10Q8NA82 808 aaPredicted RBP5.12□□□□□ -1.59
CHD4-209ENST00000542717 ACSBG1Q96GR2 724 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms