RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 TRPM3Q9HCF6 1732 aaPredicted RBP13.75□□□□□ -0.21
YBX3-212ENST00000542002 ARHGEF10O15013 1369 aa13.74□□□□□ -0.21
YBX3-212ENST00000542002 USP47Q96K76 1375 aa13.74□□□□□ -0.21
YBX3-212ENST00000542002 FAM83GA6ND36 823 aa13.74□□□□□ -0.21
YBX3-212ENST00000542002 SLC12A5Q9H2X9 1139 aa13.74□□□□□ -0.21
YBX3-212ENST00000542002 QTRT2Q9H974 415 aaKnown RBP13.74□□□□□ -0.21
YBX3-212ENST00000542002 TOPAZ1Q8N9V7 1692 aa13.74□□□□□ -0.21
YBX3-212ENST00000542002 USP21Q9UK80 565 aa13.73□□□□□ -0.21
YBX3-212ENST00000542002 SSH2Q76I76 1423 aa13.73□□□□□ -0.21
YBX3-212ENST00000542002 ABTB2Q8N961 1025 aa13.72□□□□□ -0.21
YBX3-212ENST00000542002 BCL9LQ86UU0 1499 aa13.72□□□□□ -0.21
YBX3-212ENST00000542002 SOCS7O14512 581 aa13.71□□□□□ -0.21
YBX3-212ENST00000542002 TMC1Q8TDI8 760 aa13.71□□□□□ -0.21
YBX3-212ENST00000542002 PUS7Q96PZ0 661 aaKnown RBP13.71□□□□□ -0.21
YBX3-212ENST00000542002 CPSF1Q10570 1443 aaKnown RBP13.71□□□□□ -0.22
YBX3-212ENST00000542002 ATAD2Q6PL18 1390 aa13.71□□□□□ -0.22
YBX3-212ENST00000542002 ALS2Q96Q42 1657 aa13.7□□□□□ -0.22
YBX3-212ENST00000542002 HAP1P54257 671 aaPredicted RBP13.7□□□□□ -0.22
YBX3-212ENST00000542002 ZNF692Q9BU19 519 aaPredicted RBP13.7□□□□□ -0.22
YBX3-212ENST00000542002 USP6P35125 1406 aa13.7□□□□□ -0.22
YBX3-212ENST00000542002 CD163L1Q9NR16 1453 aa13.69□□□□□ -0.22
YBX3-212ENST00000542002 RXRBP28702 533 aa13.69□□□□□ -0.22
YBX3-212ENST00000542002 ITSN1Q15811 1721 aa13.69□□□□□ -0.22
YBX3-212ENST00000542002 TTC21BQ7Z4L5 1316 aa13.68□□□□□ -0.22
YBX3-212ENST00000542002 ZRANB1Q9UGI0 708 aa13.68□□□□□ -0.22
YBX3-212ENST00000542002 NLRP6P59044 892 aa13.67□□□□□ -0.22
YBX3-212ENST00000542002 ZC3H6P61129 1189 aaKnown RBP13.67□□□□□ -0.22
YBX3-212ENST00000542002 UNC5CLQ8IV45 518 aa13.67□□□□□ -0.22
YBX3-212ENST00000542002 SLIT2O94813 1529 aa13.67□□□□□ -0.22
YBX3-212ENST00000542002 SLC24A1O60721 1099 aa13.66□□□□□ -0.22
YBX3-212ENST00000542002 GCP02774 474 aa13.66□□□□□ -0.22
YBX3-212ENST00000542002 HSPA5P11021 654 aaKnown RBP13.66□□□□□ -0.22
YBX3-212ENST00000542002 RBM6P78332 1123 aaKnown RBP13.66□□□□□ -0.22
YBX3-212ENST00000542002 TMF1P82094 1093 aa13.66□□□□□ -0.22
YBX3-212ENST00000542002 CHRNA2Q15822 529 aa13.66□□□□□ -0.22
YBX3-212ENST00000542002 NLRP13Q86W25 1043 aa13.66□□□□□ -0.22
YBX3-212ENST00000542002 TRPC5Q9UL62 973 aaPredicted RBP13.66□□□□□ -0.22
YBX3-212ENST00000542002 BRD4O60885 1362 aaPredicted RBP13.66□□□□□ -0.22
YBX3-212ENST00000542002 KTN1Q86UP2 1357 aaKnown RBP13.66□□□□□ -0.22
YBX3-212ENST00000542002 USP19O94966 1318 aa13.65□□□□□ -0.22
YBX3-212ENST00000542002 ATRNO75882 1429 aa13.65□□□□□ -0.22
YBX3-212ENST00000542002 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.65□□□□□ -0.22
YBX3-212ENST00000542002 BTG4Q9NY30 223 aa13.65□□□□□ -0.22
YBX3-212ENST00000542002 KIAA0232Q92628 1395 aa13.65□□□□□ -0.22
YBX3-212ENST00000542002 C11orf95C9JLR9 678 aaPredicted RBP13.64□□□□□ -0.23
YBX3-212ENST00000542002 EIF4G2P78344 907 aaKnown RBP eCLIP13.64□□□□□ -0.23
YBX3-212ENST00000542002 GJD4Q96KN9 370 aaPredicted RBP13.64□□□□□ -0.23
YBX3-212ENST00000542002 A0A1W2PP64 1363 aa13.63□□□□□ -0.23
YBX3-212ENST00000542002 NME9Q86XW9 330 aa13.63□□□□□ -0.23
YBX3-212ENST00000542002 PRDM11Q9NQV5 511 aa13.63□□□□□ -0.23
YBX3-212ENST00000542002 ABCA3Q99758 1704 aa13.62□□□□□ -0.23
YBX3-212ENST00000542002 CRYBG1Q9Y4K1 1723 aa13.62□□□□□ -0.23
YBX3-212ENST00000542002 VPS72Q15906 364 aa13.62□□□□□ -0.23
YBX3-212ENST00000542002 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
YBX3-212ENST00000542002 TERF2IPQ9NYB0 399 aa13.62□□□□□ -0.23
YBX3-212ENST00000542002 TTC21AQ8NDW8 1320 aa13.62□□□□□ -0.23
YBX3-212ENST00000542002 CARD14Q9BXL6 1004 aa13.61□□□□□ -0.23
YBX3-212ENST00000542002 MARF1Q9Y4F3 1742 aaKnown RBP13.61□□□□□ -0.23
YBX3-212ENST00000542002 PIK3C2AO00443 1686 aa13.59□□□□□ -0.23
YBX3-212ENST00000542002 CPDO75976 1380 aa13.59□□□□□ -0.23
YBX3-212ENST00000542002 RGS12O14924 1447 aa13.59□□□□□ -0.23
YBX3-212ENST00000542002 SOX12O15370 315 aa13.59□□□□□ -0.23
YBX3-212ENST00000542002 AXIN2Q9Y2T1 843 aa13.59□□□□□ -0.23
YBX3-212ENST00000542002 USP31Q70CQ4 1352 aa13.58□□□□□ -0.23
YBX3-212ENST00000542002 NINLQ9Y2I6 1382 aa13.58□□□□□ -0.23
YBX3-212ENST00000542002 AKAP12Q02952 1782 aa13.58□□□□□ -0.23
YBX3-212ENST00000542002 ONECUT3O60422 494 aaPredicted RBP13.58□□□□□ -0.24
YBX3-212ENST00000542002 CDCA8Q53HL2 280 aa13.58□□□□□ -0.24
YBX3-212ENST00000542002 ARHGEF25Q86VW2 580 aa13.58□□□□□ -0.24
YBX3-212ENST00000542002 NRKQ7Z2Y5 1582 aa13.58□□□□□ -0.24
YBX3-212ENST00000542002 ANKRD36BQ8N2N9 1353 aa13.58□□□□□ -0.24
YBX3-212ENST00000542002 PHRF1Q9P1Y6 1649 aaKnown RBP13.57□□□□□ -0.24
YBX3-212ENST00000542002 EDC4Q6P2E9 1401 aaKnown RBP13.57□□□□□ -0.24
YBX3-212ENST00000542002 CDK12Q9NYV4 1490 aaPredicted RBP13.57□□□□□ -0.24
YBX3-212ENST00000542002 ZBTB7CA1YPR0 619 aa13.57□□□□□ -0.24
YBX3-212ENST00000542002 FBLN1P23142 703 aa13.57□□□□□ -0.24
YBX3-212ENST00000542002 STRN4Q9NRL3 753 aa13.57□□□□□ -0.24
YBX3-212ENST00000542002 CCDC9Q9Y3X0 531 aaKnown RBP13.57□□□□□ -0.24
YBX3-212ENST00000542002 SLIT3O75094 1523 aa13.57□□□□□ -0.24
YBX3-212ENST00000542002 CAMTA1Q9Y6Y1 1673 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 FYB1O15117 783 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 LARP1Q6PKG0 1096 aaKnown RBP13.56□□□□□ -0.24
YBX3-212ENST00000542002 POLR3GLQ9BT43 218 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 GLI3P10071 1580 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 SPATA31A5Q5VU36 1347 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 SPATA31A7Q8IWB4 1347 aa13.56□□□□□ -0.24
YBX3-212ENST00000542002 COL14A1Q05707 1796 aaKnown RBP13.55□□□□□ -0.24
YBX3-212ENST00000542002 SEPT12Q8IYM1 358 aa13.55□□□□□ -0.24
YBX3-212ENST00000542002 KCNH5Q8NCM2 988 aa13.55□□□□□ -0.24
YBX3-212ENST00000542002 PLCH1Q4KWH8 1693 aa13.55□□□□□ -0.24
YBX3-212ENST00000542002 MON2Q7Z3U7 1717 aa13.55□□□□□ -0.24
YBX3-212ENST00000542002 EVA1CP58658 441 aa13.54□□□□□ -0.24
YBX3-212ENST00000542002 FAM98CQ17RN3 349 aaKnown RBP13.54□□□□□ -0.24
YBX3-212ENST00000542002 AATKQ6ZMQ8 1374 aa13.54□□□□□ -0.24
YBX3-212ENST00000542002 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.53□□□□□ -0.24
YBX3-212ENST00000542002 UPF1Q92900 1129 aaKnown RBP eCLIP13.53□□□□□ -0.24
YBX3-212ENST00000542002 GGNBP2Q9H3C7 697 aa13.53□□□□□ -0.24
YBX3-212ENST00000542002 SPATA31A1Q5TZJ5 1347 aa13.53□□□□□ -0.24
YBX3-212ENST00000542002 NRAPQ86VF7 1730 aa13.53□□□□□ -0.24
YBX3-212ENST00000542002 NWD2Q9ULI1 1742 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms