RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 CAMTA1Q9Y6Y1 1673 aa12.42□□□□□ -0.42
CNOT4-212ENST00000541284 PTCH1Q13635 1447 aa12.42□□□□□ -0.42
CNOT4-212ENST00000541284 SSH2Q76I76 1423 aa12.42□□□□□ -0.42
CNOT4-212ENST00000541284 LRRC37A3O60309 1634 aa12.42□□□□□ -0.42
CNOT4-212ENST00000541284 PDE3AQ14432 1141 aa12.41□□□□□ -0.42
CNOT4-212ENST00000541284 SIRT1Q96EB6 747 aa12.41□□□□□ -0.42
CNOT4-212ENST00000541284 PTPRUQ92729 1446 aa12.41□□□□□ -0.42
CNOT4-212ENST00000541284 NEFMP07197 916 aa12.4□□□□□ -0.42
CNOT4-212ENST00000541284 DDRGK1Q96HY6 314 aa12.4□□□□□ -0.42
CNOT4-212ENST00000541284 TRAK1Q9UPV9 953 aa12.4□□□□□ -0.42
CNOT4-212ENST00000541284 SLC4A3P48751 1232 aa12.4□□□□□ -0.42
CNOT4-212ENST00000541284 PLEKHG1Q9ULL1 1385 aa12.39□□□□□ -0.43
CNOT4-212ENST00000541284 NCBP3Q53F19 620 aaKnown RBP12.39□□□□□ -0.43
CNOT4-212ENST00000541284 RTL5Q5HYW3 569 aaPredicted RBP12.39□□□□□ -0.43
CNOT4-212ENST00000541284 TMEM132EQ6IEE7 984 aa12.39□□□□□ -0.43
CNOT4-212ENST00000541284 TNNQ9UQP3 1299 aa12.39□□□□□ -0.43
CNOT4-212ENST00000541284 TMEM2Q9UHN6 1383 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 RARSP54136 660 aaKnown RBP12.38□□□□□ -0.43
CNOT4-212ENST00000541284 FBXO31Q5XUX0 539 aaPredicted RBP12.38□□□□□ -0.43
CNOT4-212ENST00000541284 PANK1Q8TE04 598 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 TRPM3Q9HCF6 1732 aaPredicted RBP12.38□□□□□ -0.43
CNOT4-212ENST00000541284 STRCP1A6NGW2 1772 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 PPM1GO15355 546 aaPredicted RBP12.38□□□□□ -0.43
CNOT4-212ENST00000541284 GGT6Q6P531 493 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 XIRP1Q702N8 1843 aaKnown RBP12.38□□□□□ -0.43
CNOT4-212ENST00000541284 A0A1W2PP64 1363 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 RLBP1P12271 317 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 RUNDC1Q96C34 613 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 CGNL1Q0VF96 1302 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 METP08581 1390 aa12.38□□□□□ -0.43
CNOT4-212ENST00000541284 CCDC27Q2M243 656 aa12.37□□□□□ -0.43
CNOT4-212ENST00000541284 TCP11L2Q8N4U5 519 aa12.37□□□□□ -0.43
CNOT4-212ENST00000541284 VGFO15240 615 aaPredicted RBP12.36□□□□□ -0.43
CNOT4-212ENST00000541284 RGS3P49796 1198 aa12.36□□□□□ -0.43
CNOT4-212ENST00000541284 CLUAP1Q96AJ1 413 aa12.36□□□□□ -0.43
CNOT4-212ENST00000541284 SEC24BO95487 1268 aa12.36□□□□□ -0.43
CNOT4-212ENST00000541284 MORC1Q86VD1 984 aa12.36□□□□□ -0.43
CNOT4-212ENST00000541284 RRP7AQ9Y3A4 280 aaKnown RBP12.36□□□□□ -0.43
CNOT4-212ENST00000541284 COG6Q9Y2V7 657 aa12.36□□□□□ -0.43
CNOT4-212ENST00000541284 NFKBIBQ15653 356 aa12.35□□□□□ -0.43
CNOT4-212ENST00000541284 MTHFSP49914 203 aa12.35□□□□□ -0.43
CNOT4-212ENST00000541284 WDR63Q8IWG1 891 aa12.35□□□□□ -0.43
CNOT4-212ENST00000541284 PCDHB15Q9Y5E8 787 aa12.35□□□□□ -0.43
CNOT4-212ENST00000541284 TNRQ92752 1358 aa12.35□□□□□ -0.43
CNOT4-212ENST00000541284 TNNT2P45379 298 aaPredicted RBP12.33□□□□□ -0.44
CNOT4-212ENST00000541284 LMO7Q8WWI1 1683 aa12.32□□□□□ -0.44
CNOT4-212ENST00000541284 PLEKHF1Q96S99 279 aa12.32□□□□□ -0.44
CNOT4-212ENST00000541284 ADAMTS7Q9UKP4 1686 aa12.32□□□□□ -0.44
CNOT4-212ENST00000541284 CHGAP10645 457 aaKnown RBP12.32□□□□□ -0.44
CNOT4-212ENST00000541284 CDK12Q9NYV4 1490 aaPredicted RBP12.31□□□□□ -0.44
CNOT4-212ENST00000541284 ATAD2Q6PL18 1390 aa12.31□□□□□ -0.44
CNOT4-212ENST00000541284 IL27Q8NEV9 243 aa12.31□□□□□ -0.44
CNOT4-212ENST00000541284 LTN1O94822 1766 aa12.3□□□□□ -0.44
CNOT4-212ENST00000541284 OVOS2A0A0J9YW53 1432 aa12.3□□□□□ -0.44
CNOT4-212ENST00000541284 OVOS2Q6IE36 1432 aa12.3□□□□□ -0.44
CNOT4-212ENST00000541284 NEUROD2Q15784 382 aa12.3□□□□□ -0.44
CNOT4-212ENST00000541284 MAPK8IP3Q9UPT6 1336 aa12.3□□□□□ -0.44
CNOT4-212ENST00000541284 EVC2Q86UK5 1308 aa12.29□□□□□ -0.44
CNOT4-212ENST00000541284 MST1RQ04912 1400 aa12.29□□□□□ -0.44
CNOT4-212ENST00000541284 NUTM2DQ5VT03 806 aaPredicted RBP12.29□□□□□ -0.44
CNOT4-212ENST00000541284 CABP2Q9NPB3 220 aa12.29□□□□□ -0.44
CNOT4-212ENST00000541284 ALS2Q96Q42 1657 aa12.29□□□□□ -0.44
CNOT4-212ENST00000541284 TRIM35Q9UPQ4 493 aa12.28□□□□□ -0.44
CNOT4-212ENST00000541284 BCL2L13Q9BXK5 485 aa12.28□□□□□ -0.44
CNOT4-212ENST00000541284 ROBO2Q9HCK4 1378 aa12.28□□□□□ -0.44
CNOT4-212ENST00000541284 SIPA1L3O60292 1781 aaPredicted RBP12.28□□□□□ -0.44
CNOT4-212ENST00000541284 EDC4Q6P2E9 1401 aaKnown RBP12.28□□□□□ -0.44
CNOT4-212ENST00000541284 AAMPQ13685 434 aa12.28□□□□□ -0.44
CNOT4-212ENST00000541284 FRAT1Q92837 279 aaPredicted RBP12.28□□□□□ -0.44
CNOT4-212ENST00000541284 SETD1BQ9UPS6 1966 aaKnown RBP12.27□□□□□ -0.45
CNOT4-212ENST00000541284 AATKQ6ZMQ8 1374 aa12.27□□□□□ -0.45
CNOT4-212ENST00000541284 FRAT2O75474 233 aaPredicted RBP12.26□□□□□ -0.45
CNOT4-212ENST00000541284 GSE1Q14687 1217 aa12.26□□□□□ -0.45
CNOT4-212ENST00000541284 PPIP5K1Q6PFW1 1433 aa12.26□□□□□ -0.45
CNOT4-212ENST00000541284 PDZRN3Q9UPQ7 1066 aa12.26□□□□□ -0.45
CNOT4-212ENST00000541284 ANTXR1Q9H6X2 564 aa12.25□□□□□ -0.45
CNOT4-212ENST00000541284 MVPQ14764 893 aaKnown RBP12.25□□□□□ -0.45
CNOT4-212ENST00000541284 PIK3R4Q99570 1358 aa12.25□□□□□ -0.45
CNOT4-212ENST00000541284 TUBGCP6Q96RT7 1819 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 PMFBP1Q8TBY8 1022 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 TSR2Q969E8 191 aaKnown RBP12.24□□□□□ -0.45
CNOT4-212ENST00000541284 CFAP53Q96M91 514 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 NFAT5O94916 1531 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 FYB1O15117 783 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 TBC1D32Q96NH3 1257 aa12.24□□□□□ -0.45
CNOT4-212ENST00000541284 MED1Q15648 1581 aaPredicted RBP12.24□□□□□ -0.45
CNOT4-212ENST00000541284 U2AF1L5P0DN76 240 aaPredicted RBP12.23□□□□□ -0.45
CNOT4-212ENST00000541284 U2AF1Q01081 240 aaKnown RBP eCLIP12.23□□□□□ -0.453e-20■■■■■ 41.5
CNOT4-212ENST00000541284 USP31Q70CQ4 1352 aa12.23□□□□□ -0.45
CNOT4-212ENST00000541284 LMTK3Q96Q04 1460 aa12.23□□□□□ -0.45
CNOT4-212ENST00000541284 STRCQ7RTU9 1775 aa12.23□□□□□ -0.45
CNOT4-212ENST00000541284 CANXP27824 592 aaKnown RBP12.23□□□□□ -0.45
CNOT4-212ENST00000541284 TMPOP42166 694 aaKnown RBP12.23□□□□□ -0.45
CNOT4-212ENST00000541284 MYH16Q9H6N6 1097 aa12.23□□□□□ -0.45
CNOT4-212ENST00000541284 KIF1AQ12756 1690 aa12.22□□□□□ -0.45
CNOT4-212ENST00000541284 CT47B1P0C2W7 299 aaPredicted RBP12.22□□□□□ -0.45
CNOT4-212ENST00000541284 GGNBP2Q9H3C7 697 aa12.22□□□□□ -0.45
CNOT4-212ENST00000541284 ANKARQ7Z5J8 1434 aa12.22□□□□□ -0.45
CNOT4-212ENST00000541284 TRIM27P14373 513 aa12.22□□□□□ -0.45
CNOT4-212ENST00000541284 FAM208AQ9UK61 1670 aaKnown RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms