RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 ABCA3Q99758 1704 aa12.27□□□□□ -0.45
USP28-203ENST00000537490 BLMP54132 1417 aaPredicted RBP12.27□□□□□ -0.45
USP28-203ENST00000537490 ALS2Q96Q42 1657 aa12.26□□□□□ -0.45
USP28-203ENST00000537490 NBPF8Q3BBV2 869 aa12.26□□□□□ -0.45
USP28-203ENST00000537490 NUTM2GQ5VZR2 741 aa12.26□□□□□ -0.45
USP28-203ENST00000537490 ACEP12821 1306 aa12.26□□□□□ -0.45
USP28-203ENST00000537490 PLCH1Q4KWH8 1693 aa12.26□□□□□ -0.45
USP28-203ENST00000537490 ARHGEF28Q8N1W1 1705 aaKnown RBP12.25□□□□□ -0.45
USP28-203ENST00000537490 A0A0G2JS52 829 aa12.25□□□□□ -0.45
USP28-203ENST00000537490 PLEKHG3A1L390 1219 aa12.25□□□□□ -0.45
USP28-203ENST00000537490 MYT1Q01538 1121 aa12.25□□□□□ -0.45
USP28-203ENST00000537490 PRDM11Q9NQV5 511 aa12.25□□□□□ -0.45
USP28-203ENST00000537490 NWD2Q9ULI1 1742 aa12.25□□□□□ -0.45
USP28-203ENST00000537490 POLR3AO14802 1390 aaPredicted RBP12.24□□□□□ -0.45
USP28-203ENST00000537490 ZC3H6P61129 1189 aaKnown RBP12.24□□□□□ -0.45
USP28-203ENST00000537490 CHRNA2Q15822 529 aa12.24□□□□□ -0.45
USP28-203ENST00000537490 SPATA31A5Q5VU36 1347 aa12.24□□□□□ -0.45
USP28-203ENST00000537490 SPATA31A7Q8IWB4 1347 aa12.24□□□□□ -0.45
USP28-203ENST00000537490 BRWD3Q6RI45 1802 aa12.23□□□□□ -0.45
USP28-203ENST00000537490 KIAA0232Q92628 1395 aa12.23□□□□□ -0.45
USP28-203ENST00000537490 SF3B2Q13435 895 aaKnown RBP12.23□□□□□ -0.45
USP28-203ENST00000537490 L3MBTL2Q969R5 705 aa12.23□□□□□ -0.45
USP28-203ENST00000537490 SIN3AQ96ST3 1273 aa12.23□□□□□ -0.45
USP28-203ENST00000537490 CABP2Q9NPB3 220 aa12.23□□□□□ -0.45
USP28-203ENST00000537490 CENPJQ9HC77 1338 aaPredicted RBP12.22□□□□□ -0.45
USP28-203ENST00000537490 SRPK2P78362 688 aaKnown RBP12.22□□□□□ -0.45
USP28-203ENST00000537490 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
USP28-203ENST00000537490 NRAPQ86VF7 1730 aa12.22□□□□□ -0.45
USP28-203ENST00000537490 COL14A1Q05707 1796 aaKnown RBP12.21□□□□□ -0.45
USP28-203ENST00000537490 ADRA2BP18089 450 aa12.21□□□□□ -0.45
USP28-203ENST00000537490 ABTB2Q8N961 1025 aa12.21□□□□□ -0.45
USP28-203ENST00000537490 KIAA1210Q9ULL0 1709 aa12.2□□□□□ -0.46
USP28-203ENST00000537490 STRN4Q9NRL3 753 aa12.2□□□□□ -0.46
USP28-203ENST00000537490 CRYBG1Q9Y4K1 1723 aa12.2□□□□□ -0.46
USP28-203ENST00000537490 SPATA31A1Q5TZJ5 1347 aa12.19□□□□□ -0.46
USP28-203ENST00000537490 NEUROD1Q13562 356 aa12.19□□□□□ -0.46
USP28-203ENST00000537490 CABP1Q9NZU7 370 aa12.19□□□□□ -0.46
USP28-203ENST00000537490 PPIP5K1Q6PFW1 1433 aa12.19□□□□□ -0.46
USP28-203ENST00000537490 ITSN1Q15811 1721 aa12.18□□□□□ -0.46
USP28-203ENST00000537490 BAG6P46379 1132 aa12.18□□□□□ -0.46
USP28-203ENST00000537490 EVA1CP58658 441 aa12.18□□□□□ -0.46
USP28-203ENST00000537490 USP19O94966 1318 aa12.17□□□□□ -0.46
USP28-203ENST00000537490 TOPAZ1Q8N9V7 1692 aa12.17□□□□□ -0.46
USP28-203ENST00000537490 GCP02774 474 aa12.17□□□□□ -0.46
USP28-203ENST00000537490 EN1Q05925 392 aaPredicted RBP12.17□□□□□ -0.46
USP28-203ENST00000537490 NLRP13Q86W25 1043 aa12.17□□□□□ -0.46
USP28-203ENST00000537490 PIAS4Q8N2W9 510 aaPredicted RBP12.17□□□□□ -0.46
USP28-203ENST00000537490 USP35Q9P2H5 1018 aa12.17□□□□□ -0.46
USP28-203ENST00000537490 LARP1Q6PKG0 1096 aaKnown RBP12.16□□□□□ -0.46
USP28-203ENST00000537490 SSH2Q76I76 1423 aa12.15□□□□□ -0.46
USP28-203ENST00000537490 CPDO75976 1380 aa12.15□□□□□ -0.46
USP28-203ENST00000537490 PHRF1Q9P1Y6 1649 aaKnown RBP12.15□□□□□ -0.47
USP28-203ENST00000537490 EP400Q96L91 3159 aa12.14□□□□□ -0.47
USP28-203ENST00000537490 THSD7AQ9UPZ6 1657 aa12.14□□□□□ -0.47
USP28-203ENST00000537490 CAMTA1Q9Y6Y1 1673 aa12.14□□□□□ -0.47
USP28-203ENST00000537490 PSDA5PKW4 1024 aaPredicted RBP12.14□□□□□ -0.47
USP28-203ENST00000537490 NLRP6P59044 892 aa12.14□□□□□ -0.47
USP28-203ENST00000537490 BARGINQ6ZT62 677 aa12.14□□□□□ -0.47
USP28-203ENST00000537490 EVC2Q86UK5 1308 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 USP6P35125 1406 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 TRIM37O94972 964 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 FAM196AQ6ZSG2 479 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 TCP11L2Q8N4U5 519 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 BRD4O60885 1362 aaPredicted RBP12.13□□□□□ -0.47
USP28-203ENST00000537490 NRKQ7Z2Y5 1582 aa12.13□□□□□ -0.47
USP28-203ENST00000537490 ZBTB7CA1YPR0 619 aa12.12□□□□□ -0.47
USP28-203ENST00000537490 EZH2Q15910 746 aaKnown RBP12.12□□□□□ -0.47
USP28-203ENST00000537490 ROCK2O75116 1388 aaKnown RBP12.12□□□□□ -0.47
USP28-203ENST00000537490 QRICH2Q9H0J4 1663 aa12.11□□□□□ -0.47
USP28-203ENST00000537490 PDE3BQ13370 1112 aa12.11□□□□□ -0.47
USP28-203ENST00000537490 CAMKK2Q96RR4 588 aa12.1□□□□□ -0.47
USP28-203ENST00000537490 ZNF692Q9BU19 519 aaPredicted RBP12.1□□□□□ -0.47
USP28-203ENST00000537490 THRAP3Q9Y2W1 955 aaKnown RBP12.1□□□□□ -0.47
USP28-203ENST00000537490 DISP2A7MBM2 1401 aa12.1□□□□□ -0.47
USP28-203ENST00000537490 TTC21BQ7Z4L5 1316 aa12.1□□□□□ -0.47
USP28-203ENST00000537490 LMO7Q8WWI1 1683 aa12.1□□□□□ -0.47
USP28-203ENST00000537490 COL5A2P05997 1499 aaPredicted RBP12.09□□□□□ -0.47
USP28-203ENST00000537490 TRPM1Q7Z4N2 1603 aa12.09□□□□□ -0.47
USP28-203ENST00000537490 APBA3O96018 575 aa12.09□□□□□ -0.47
USP28-203ENST00000537490 R3HDM1Q15032 1099 aaKnown RBP12.09□□□□□ -0.47
USP28-203ENST00000537490 AATKQ6ZMQ8 1374 aa12.08□□□□□ -0.48
USP28-203ENST00000537490 AXIN2Q9Y2T1 843 aa12.08□□□□□ -0.48
USP28-203ENST00000537490 SLIT3O75094 1523 aa12.07□□□□□ -0.48
USP28-203ENST00000537490 ARHGEF25Q86VW2 580 aa12.07□□□□□ -0.48
USP28-203ENST00000537490 RGPD1P0DJD0 1748 aa12.06□□□□□ -0.48
USP28-203ENST00000537490 CRB1P82279 1406 aa12.06□□□□□ -0.48
USP28-203ENST00000537490 CPSF1Q10570 1443 aaKnown RBP12.06□□□□□ -0.48
USP28-203ENST00000537490 SOX12O15370 315 aa12.06□□□□□ -0.48
USP28-203ENST00000537490 TOM1L2Q6ZVM7 507 aa12.06□□□□□ -0.48
USP28-203ENST00000537490 CARD11Q9BXL7 1154 aa12.06□□□□□ -0.48
USP28-203ENST00000537490 KCNH5Q8NCM2 988 aa12.05□□□□□ -0.48
USP28-203ENST00000537490 TNS1Q9HBL0 1735 aaKnown RBP12.05□□□□□ -0.48
USP28-203ENST00000537490 TTC21AQ8NDW8 1320 aa12.05□□□□□ -0.48
USP28-203ENST00000537490 KTN1Q86UP2 1357 aaKnown RBP12.05□□□□□ -0.48
USP28-203ENST00000537490 PIK3C2AO00443 1686 aa12.04□□□□□ -0.48
USP28-203ENST00000537490 WDR17Q8IZU2 1322 aa12.04□□□□□ -0.48
USP28-203ENST00000537490 DDB1Q16531 1140 aa12.03□□□□□ -0.48
USP28-203ENST00000537490 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP28-203ENST00000537490 PARD3Q8TEW0 1356 aa12.03□□□□□ -0.48
USP28-203ENST00000537490 SBNO2Q9Y2G9 1366 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms