RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PMFBP1Q8TBY8 1022 aa11.93□□□□□ -0.5
NEDD8-207ENST00000533242 BTG4Q9NY30 223 aa11.93□□□□□ -0.5
NEDD8-207ENST00000533242 TULP4Q9NRJ4 1543 aa11.93□□□□□ -0.5
NEDD8-207ENST00000533242 ITSN1Q15811 1721 aa11.93□□□□□ -0.5
NEDD8-207ENST00000533242 POGKQ9P215 609 aa11.93□□□□□ -0.5
NEDD8-207ENST00000533242 GPRASP1Q5JY77 1395 aa11.92□□□□□ -0.5
NEDD8-207ENST00000533242 ADGRB1O14514 1584 aa11.92□□□□□ -0.5
NEDD8-207ENST00000533242 SAFB2Q14151 953 aaKnown RBP eCLIP11.92□□□□□ -0.5
NEDD8-207ENST00000533242 SPATA31A5Q5VU36 1347 aa11.92□□□□□ -0.5
NEDD8-207ENST00000533242 SPATA31A7Q8IWB4 1347 aa11.92□□□□□ -0.5
NEDD8-207ENST00000533242 PHRF1Q9P1Y6 1649 aaKnown RBP11.91□□□□□ -0.5
NEDD8-207ENST00000533242 EN1Q05925 392 aaPredicted RBP11.91□□□□□ -0.5
NEDD8-207ENST00000533242 RREB1Q92766 1687 aa11.89□□□□□ -0.51
NEDD8-207ENST00000533242 PRR36Q9H6K5 1346 aa11.89□□□□□ -0.51
NEDD8-207ENST00000533242 R3HDM1Q15032 1099 aaKnown RBP11.88□□□□□ -0.51
NEDD8-207ENST00000533242 ZNF316A6NFI3 1004 aaPredicted RBP11.87□□□□□ -0.51
NEDD8-207ENST00000533242 ARHGEF28Q8N1W1 1705 aaKnown RBP11.87□□□□□ -0.51
NEDD8-207ENST00000533242 PARD3Q8TEW0 1356 aa11.87□□□□□ -0.51
NEDD8-207ENST00000533242 NUP188Q5SRE5 1749 aa11.87□□□□□ -0.51
NEDD8-207ENST00000533242 MINK1Q8N4C8 1332 aaPredicted RBP11.87□□□□□ -0.51
NEDD8-207ENST00000533242 WASLO00401 505 aaPredicted RBP11.87□□□□□ -0.51
NEDD8-207ENST00000533242 FAM182BQ5T319 152 aa11.87□□□□□ -0.51
NEDD8-207ENST00000533242 PRDM11Q9NQV5 511 aa11.87□□□□□ -0.51
NEDD8-207ENST00000533242 ATP7BP35670 1465 aa11.87□□□□□ -0.51
NEDD8-207ENST00000533242 SPATA31A1Q5TZJ5 1347 aa11.86□□□□□ -0.51
NEDD8-207ENST00000533242 HIRIP3Q9BW71 556 aaPredicted RBP11.86□□□□□ -0.51
NEDD8-207ENST00000533242 TRAK1Q9UPV9 953 aa11.86□□□□□ -0.51
NEDD8-207ENST00000533242 EZH2Q15910 746 aaKnown RBP11.86□□□□□ -0.51
NEDD8-207ENST00000533242 FAM196AQ6ZSG2 479 aa11.86□□□□□ -0.51
NEDD8-207ENST00000533242 NGDNQ8NEJ9 315 aaKnown RBP11.86□□□□□ -0.51
NEDD8-207ENST00000533242 TOPAZ1Q8N9V7 1692 aa11.85□□□□□ -0.51
NEDD8-207ENST00000533242 CAMKK2Q96RR4 588 aa11.85□□□□□ -0.51
NEDD8-207ENST00000533242 PAK3O75914 559 aaPredicted RBP11.85□□□□□ -0.51
NEDD8-207ENST00000533242 KIAA0232Q92628 1395 aa11.84□□□□□ -0.51
NEDD8-207ENST00000533242 TRIM37O94972 964 aa11.83□□□□□ -0.52
NEDD8-207ENST00000533242 NEUROD1Q13562 356 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 STAC3Q96MF2 364 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 NRKQ7Z2Y5 1582 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 LMO7Q8WWI1 1683 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 BARGINQ6ZT62 677 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 SSH2Q76I76 1423 aa11.82□□□□□ -0.52
NEDD8-207ENST00000533242 APBA3O96018 575 aa11.81□□□□□ -0.52
NEDD8-207ENST00000533242 CHRNA2Q15822 529 aa11.81□□□□□ -0.52
NEDD8-207ENST00000533242 NUDT16Q96DE0 195 aaKnown RBP11.81□□□□□ -0.52
NEDD8-207ENST00000533242 STRN4Q9NRL3 753 aa11.81□□□□□ -0.52
NEDD8-207ENST00000533242 PARP4Q9UKK3 1724 aaKnown RBP11.81□□□□□ -0.52
NEDD8-207ENST00000533242 POLR3AO14802 1390 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-207ENST00000533242 RGPD3A6NKT7 1758 aaPredicted RBP11.8□□□□□ -0.52
NEDD8-207ENST00000533242 RGPD4Q7Z3J3 1758 aa11.8□□□□□ -0.52
NEDD8-207ENST00000533242 KDM2AQ9Y2K7 1162 aa11.8□□□□□ -0.52
NEDD8-207ENST00000533242 CAMTA1Q9Y6Y1 1673 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 KIAA1210Q9ULL0 1709 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 EVA1CP58658 441 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 PDE3BQ13370 1112 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 NBPF8Q3BBV2 869 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 NBPF14Q5TI25 921 aa11.79□□□□□ -0.52
NEDD8-207ENST00000533242 ZC3H6P61129 1189 aaKnown RBP11.78□□□□□ -0.52
NEDD8-207ENST00000533242 DCAF11Q8TEB1 546 aa11.78□□□□□ -0.52
NEDD8-207ENST00000533242 CPDO75976 1380 aa11.78□□□□□ -0.52
NEDD8-207ENST00000533242 SRCAPQ6ZRS2 3230 aa11.78□□□□□ -0.52
NEDD8-207ENST00000533242 SBF2Q86WG5 1849 aa11.78□□□□□ -0.52
NEDD8-207ENST00000533242 RAB3GAP2Q9H2M9 1393 aa11.78□□□□□ -0.52
NEDD8-207ENST00000533242 PEAK1Q9H792 1746 aa11.77□□□□□ -0.52
NEDD8-207ENST00000533242 NUTM2GQ5VZR2 741 aa11.77□□□□□ -0.53
NEDD8-207ENST00000533242 TCP11L2Q8N4U5 519 aa11.77□□□□□ -0.53
NEDD8-207ENST00000533242 CDK19Q9BWU1 502 aa11.77□□□□□ -0.53
NEDD8-207ENST00000533242 THRAP3Q9Y2W1 955 aaKnown RBP11.77□□□□□ -0.53
NEDD8-207ENST00000533242 ACEP12821 1306 aa11.77□□□□□ -0.53
NEDD8-207ENST00000533242 PLEKHG3A1L390 1219 aa11.76□□□□□ -0.53
NEDD8-207ENST00000533242 C11orf95C9JLR9 678 aaPredicted RBP11.76□□□□□ -0.53
NEDD8-207ENST00000533242 USP35Q9P2H5 1018 aa11.76□□□□□ -0.53
NEDD8-207ENST00000533242 USP19O94966 1318 aa11.76□□□□□ -0.53
NEDD8-207ENST00000533242 WNK3Q9BYP7 1800 aa11.76□□□□□ -0.53
NEDD8-207ENST00000533242 LARP1Q6PKG0 1096 aaKnown RBP11.76□□□□□ -0.53
NEDD8-207ENST00000533242 YY1P25490 414 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 CCDC61Q9Y6R9 512 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 CASZ1Q86V15 1759 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 MIER1Q8N108 512 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 SPON1Q9HCB6 807 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 NINLQ9Y2I6 1382 aa11.75□□□□□ -0.53
NEDD8-207ENST00000533242 LRRC37A3O60309 1634 aa11.74□□□□□ -0.53
NEDD8-207ENST00000533242 COL5A2P05997 1499 aaPredicted RBP11.74□□□□□ -0.53
NEDD8-207ENST00000533242 KCNQ2O43526 872 aa11.74□□□□□ -0.53
NEDD8-207ENST00000533242 ABTB2Q8N961 1025 aa11.74□□□□□ -0.53
NEDD8-207ENST00000533242 BRD4O60885 1362 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-207ENST00000533242 CLSPNQ9HAW4 1339 aa11.73□□□□□ -0.53
NEDD8-207ENST00000533242 PPP1R1BQ9UD71 204 aaPredicted RBP11.73□□□□□ -0.53
NEDD8-207ENST00000533242 DCAF8L1A6NGE4 600 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 NLRP13Q86W25 1043 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 AKAP12Q02952 1782 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 OVOS2A0A0G2JMS6 1433 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 OVOS2A0A0J9YW53 1432 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 CRB1P82279 1406 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 OVOS2Q6IE36 1432 aa11.72□□□□□ -0.53
NEDD8-207ENST00000533242 COL18A1P39060 1754 aa11.71□□□□□ -0.53
NEDD8-207ENST00000533242 SLIT3O75094 1523 aa11.71□□□□□ -0.53
NEDD8-207ENST00000533242 GCP02774 474 aa11.71□□□□□ -0.54
NEDD8-207ENST00000533242 PPIP5K1Q6PFW1 1433 aa11.71□□□□□ -0.54
NEDD8-207ENST00000533242 QRICH2Q9H0J4 1663 aa11.7□□□□□ -0.54
NEDD8-207ENST00000533242 PLSCR1O15162 318 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 202 ms