RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 U2SURPO15042 1029 aaKnown RBP24.6■■□□□ 1.53
VPS28-213ENST00000530983 BRPF3Q9ULD4 1205 aa24.6■■□□□ 1.53
VPS28-213ENST00000530983 TRIM35Q9UPQ4 493 aa24.6■■□□□ 1.53
VPS28-213ENST00000530983 ATAD2Q6PL18 1390 aa24.59■■□□□ 1.53
VPS28-213ENST00000530983 TMPOP42166 694 aaKnown RBP24.59■■□□□ 1.53
VPS28-213ENST00000530983 MED14O60244 1454 aa24.59■■□□□ 1.53
VPS28-213ENST00000530983 YEATS2Q9ULM3 1422 aa24.59■■□□□ 1.53
VPS28-213ENST00000530983 DZIP1LQ8IYY4 767 aaKnown RBP24.58■■□□□ 1.53
VPS28-213ENST00000530983 FYB1O15117 783 aa24.58■■□□□ 1.53
VPS28-213ENST00000530983 EXOSC9Q06265 439 aaKnown RBP24.57■■□□□ 1.52
VPS28-213ENST00000530983 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.57■■□□□ 1.52
VPS28-213ENST00000530983 MINK1Q8N4C8 1332 aaPredicted RBP24.57■■□□□ 1.52
VPS28-213ENST00000530983 FTSJ3Q8IY81 847 aaKnown RBP24.57■■□□□ 1.52
VPS28-213ENST00000530983 YTHDC2Q9H6S0 1430 aaKnown RBP24.56■■□□□ 1.52
VPS28-213ENST00000530983 PRAM1Q96QH2 718 aa24.56■■□□□ 1.52
VPS28-213ENST00000530983 SMC4Q9NTJ3 1288 aa24.55■■□□□ 1.52
VPS28-213ENST00000530983 TERF2IPQ9NYB0 399 aa24.55■■□□□ 1.52
VPS28-213ENST00000530983 TRIM27P14373 513 aa24.53■■□□□ 1.52
VPS28-213ENST00000530983 BECN1Q14457 450 aa24.53■■□□□ 1.52
VPS28-213ENST00000530983 SSH1Q8WYL5 1049 aa24.53■■□□□ 1.52
VPS28-213ENST00000530983 TBC1D32Q96NH3 1257 aa24.53■■□□□ 1.52
VPS28-213ENST00000530983 KIF20BQ96Q89 1820 aa24.52■■□□□ 1.52
VPS28-213ENST00000530983 IL16Q14005 1332 aa24.52■■□□□ 1.52
VPS28-213ENST00000530983 PNPLA6Q8IY17 1366 aa24.51■■□□□ 1.51
VPS28-213ENST00000530983 POGKQ9P215 609 aa24.51■■□□□ 1.51
VPS28-213ENST00000530983 ALKQ9UM73 1620 aa24.5■■□□□ 1.51
VPS28-213ENST00000530983 UPF2Q9HAU5 1272 aaKnown RBP24.5■■□□□ 1.51
VPS28-213ENST00000530983 ARHGEF40Q8TER5 1519 aa24.49■■□□□ 1.51
VPS28-213ENST00000530983 ATF7IPQ6VMQ6 1270 aa24.49■■□□□ 1.51
VPS28-213ENST00000530983 DIAPH1O60610 1272 aaKnown RBP24.48■■□□□ 1.51
VPS28-213ENST00000530983 RIPK4P57078 832 aa24.48■■□□□ 1.51
VPS28-213ENST00000530983 HDAC1Q13547 482 aaPredicted RBP24.47■■□□□ 1.51
VPS28-213ENST00000530983 DDX19BQ9UMR2 479 aa24.47■■□□□ 1.51
VPS28-213ENST00000530983 ITPRIPQ8IWB1 547 aa24.46■■□□□ 1.51
VPS28-213ENST00000530983 CDC42BPGQ6DT37 1551 aa24.46■■□□□ 1.51
VPS28-213ENST00000530983 HDGFL2Q7Z4V5 671 aaPredicted RBP24.46■■□□□ 1.51
VPS28-213ENST00000530983 CDK19Q9BWU1 502 aa24.46■■□□□ 1.51
VPS28-213ENST00000530983 NOB1Q9ULX3 412 aaKnown RBP24.46■■□□□ 1.51
VPS28-213ENST00000530983 FBXO31Q5XUX0 539 aaPredicted RBP24.45■■□□□ 1.51
VPS28-213ENST00000530983 SLKQ9H2G2 1235 aaPredicted RBP24.45■■□□□ 1.51
VPS28-213ENST00000530983 ANTXR1Q9H6X2 564 aa24.45■■□□□ 1.51
VPS28-213ENST00000530983 LRRC7Q96NW7 1537 aa24.45■■□□□ 1.5
VPS28-213ENST00000530983 CABP1Q9NZU7 370 aa24.44■■□□□ 1.5
VPS28-213ENST00000530983 TBC1D2Q9BYX2 928 aa24.43■■□□□ 1.5
VPS28-213ENST00000530983 TMEM57Q8N5G2 664 aa24.42■■□□□ 1.5
VPS28-213ENST00000530983 PNNQ9H307 717 aaKnown RBP24.42■■□□□ 1.5
VPS28-213ENST00000530983 SMC5Q8IY18 1101 aa24.4■■□□□ 1.5
VPS28-213ENST00000530983 ZBTB40Q9NUA8 1239 aa24.4■■□□□ 1.5
VPS28-213ENST00000530983 KIF16BQ96L93 1317 aa24.4■■□□□ 1.5
VPS28-213ENST00000530983 FCHSD2O94868 740 aa24.4■■□□□ 1.5
VPS28-213ENST00000530983 FAM135BQ49AJ0 1406 aa24.39■■□□□ 1.5
VPS28-213ENST00000530983 RSPH6AQ9H0K4 717 aa24.38■■□□□ 1.49
VPS28-213ENST00000530983 MAP2P11137 1827 aaKnown RBP24.37■■□□□ 1.49
VPS28-213ENST00000530983 ALDH1L2Q3SY69 923 aa24.37■■□□□ 1.49
VPS28-213ENST00000530983 ATP7BP35670 1465 aa24.37■■□□□ 1.49
VPS28-213ENST00000530983 IPO8O15397 1037 aaKnown RBP24.36■■□□□ 1.49
VPS28-213ENST00000530983 POLKQ9UBT6 870 aa24.36■■□□□ 1.49
VPS28-213ENST00000530983 DLC1Q96QB1 1528 aa24.36■■□□□ 1.49
VPS28-213ENST00000530983 SETD1AO15047 1707 aaKnown RBP24.36■■□□□ 1.49
VPS28-213ENST00000530983 FBLN1P23142 703 aa24.36■■□□□ 1.49
VPS28-213ENST00000530983 CYB5RLQ6IPT4 315 aa24.36■■□□□ 1.49
VPS28-213ENST00000530983 PRKAR2BP31323 418 aa24.35■■□□□ 1.49
VPS28-213ENST00000530983 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.35■■□□□ 1.49
VPS28-213ENST00000530983 REREQ9P2R6 1566 aa24.35■■□□□ 1.49
VPS28-213ENST00000530983 C22orf23Q9BZE7 217 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 PPP6R1Q9UPN7 881 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 PPIP5K1Q6PFW1 1433 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 STAG3Q9UJ98 1225 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 RIMBP3CA6NJZ7 1639 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 RIMBP3BA6NNM3 1639 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 RIMBP3Q9UFD9 1639 aa24.34■■□□□ 1.49
VPS28-213ENST00000530983 MFAP1P55081 439 aaKnown RBP24.33■■□□□ 1.49
VPS28-213ENST00000530983 WAPLQ7Z5K2 1190 aa24.33■■□□□ 1.49
VPS28-213ENST00000530983 DIP2BQ9P265 1576 aa24.33■■□□□ 1.48
VPS28-213ENST00000530983 AGLP35573 1532 aa24.31■■□□□ 1.48
VPS28-213ENST00000530983 A2ML1A8K2U0 1454 aa24.31■■□□□ 1.48
VPS28-213ENST00000530983 BRPF1P55201 1214 aaPredicted RBP24.31■■□□□ 1.48
VPS28-213ENST00000530983 FAM69CQ0P6D2 419 aa24.31■■□□□ 1.48
VPS28-213ENST00000530983 PHACTR3Q96KR7 559 aa24.3■■□□□ 1.48
VPS28-213ENST00000530983 NUCB1Q02818 461 aa24.3■■□□□ 1.48
VPS28-213ENST00000530983 ZNF428Q96B54 188 aa24.29■■□□□ 1.48
VPS28-213ENST00000530983 NFE2L2Q16236 605 aa24.28■■□□□ 1.48
VPS28-213ENST00000530983 HMOX1P09601 288 aa24.28■■□□□ 1.48
VPS28-213ENST00000530983 THUMPD2Q9BTF0 503 aaKnown RBP24.27■■□□□ 1.48
VPS28-213ENST00000530983 CPSF1Q10570 1443 aaKnown RBP24.26■■□□□ 1.47
VPS28-213ENST00000530983 RIMS2Q9UQ26 1411 aa24.26■■□□□ 1.47
VPS28-213ENST00000530983 SPATA31D1Q6ZQQ2 1576 aa24.26■■□□□ 1.47
VPS28-213ENST00000530983 EMILIN1Q9Y6C2 1016 aa24.26■■□□□ 1.47
VPS28-213ENST00000530983 VAMP4O75379 141 aa24.26■■□□□ 1.47
VPS28-213ENST00000530983 SPRYD3Q8NCJ5 442 aa24.26■■□□□ 1.47
VPS28-213ENST00000530983 LNPKQ9C0E8 428 aa24.25■■□□□ 1.47
VPS28-213ENST00000530983 EDC4Q6P2E9 1401 aaKnown RBP24.25■■□□□ 1.47
VPS28-213ENST00000530983 PTCH1Q13635 1447 aa24.24■■□□□ 1.47
VPS28-213ENST00000530983 DLG5Q8TDM6 1919 aa24.24■■□□□ 1.47
VPS28-213ENST00000530983 IL13P35225 146 aa24.24■■□□□ 1.47
VPS28-213ENST00000530983 MRPL50Q8N5N7 158 aaKnown RBP24.24■■□□□ 1.47
VPS28-213ENST00000530983 CDK12Q9NYV4 1490 aaPredicted RBP24.24■■□□□ 1.47
VPS28-213ENST00000530983 PIK3R4Q99570 1358 aa24.24■■□□□ 1.47
VPS28-213ENST00000530983 ZBTB7BO15156 539 aaPredicted RBP24.23■■□□□ 1.47
VPS28-213ENST00000530983 CHD1LQ86WJ1 897 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms