RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PHLPP1O60346 1717 aa28.73■■■□□ 2.19
VPS28-212ENST00000530836 MRS2Q9HD23 443 aa28.72■■■□□ 2.19
VPS28-212ENST00000530836 PXDNQ92626 1479 aa28.72■■■□□ 2.19
VPS28-212ENST00000530836 TOPAZ1Q8N9V7 1692 aa28.71■■■□□ 2.19
VPS28-212ENST00000530836 CC2D1BQ5T0F9 858 aaKnown RBP28.71■■■□□ 2.19
VPS28-212ENST00000530836 CARD14Q9BXL6 1004 aa28.71■■■□□ 2.19
VPS28-212ENST00000530836 TERF2IPQ9NYB0 399 aa28.71■■■□□ 2.19
VPS28-212ENST00000530836 ITSN1Q15811 1721 aa28.71■■■□□ 2.19
VPS28-212ENST00000530836 COL16A1Q07092 1604 aaPredicted RBP28.71■■■□□ 2.19
VPS28-212ENST00000530836 BRD4O60885 1362 aaPredicted RBP28.7■■■□□ 2.19
VPS28-212ENST00000530836 CNGB1Q14028 1251 aaPredicted RBP28.7■■■□□ 2.19
VPS28-212ENST00000530836 NLRP13Q86W25 1043 aa28.69■■■□□ 2.18
VPS28-212ENST00000530836 NSD3Q9BZ95 1437 aa28.67■■■□□ 2.18
VPS28-212ENST00000530836 JCADQ9P266 1359 aa28.67■■■□□ 2.18
VPS28-212ENST00000530836 HDGFL2Q7Z4V5 671 aaPredicted RBP28.65■■■□□ 2.18
VPS28-212ENST00000530836 ZNF692Q9BU19 519 aaPredicted RBP28.65■■■□□ 2.18
VPS28-212ENST00000530836 SBNO1A3KN83 1393 aa28.65■■■□□ 2.18
VPS28-212ENST00000530836 CGNL1Q0VF96 1302 aa28.65■■■□□ 2.18
VPS28-212ENST00000530836 SPATA31A3Q5VYP0 1347 aa28.65■■■□□ 2.18
VPS28-212ENST00000530836 NSD2O96028 1365 aa28.63■■■□□ 2.17
VPS28-212ENST00000530836 CCDC184Q52MB2 194 aa28.62■■■□□ 2.17
VPS28-212ENST00000530836 A0A1W2PP64 1363 aa28.62■■■□□ 2.17
VPS28-212ENST00000530836 CPSF1Q10570 1443 aaKnown RBP28.61■■■□□ 2.17
VPS28-212ENST00000530836 CD163L1Q9NR16 1453 aa28.59■■■□□ 2.17
VPS28-212ENST00000530836 PNPLA6Q8IY17 1366 aa28.59■■■□□ 2.17
VPS28-212ENST00000530836 PAK3O75914 559 aaPredicted RBP28.59■■■□□ 2.17
VPS28-212ENST00000530836 USP6P35125 1406 aa28.58■■■□□ 2.17
VPS28-212ENST00000530836 TNS3Q68CZ2 1445 aa28.58■■■□□ 2.17
VPS28-212ENST00000530836 LMOD2Q6P5Q4 547 aa28.56■■■□□ 2.16
VPS28-212ENST00000530836 ARHGEF10O15013 1369 aa28.55■■■□□ 2.16
VPS28-212ENST00000530836 SPATA31A6Q5VVP1 1343 aa28.55■■■□□ 2.16
VPS28-212ENST00000530836 SSH2Q76I76 1423 aa28.54■■■□□ 2.16
VPS28-212ENST00000530836 PPP2R1AP30153 589 aa28.53■■■□□ 2.16
VPS28-212ENST00000530836 TRPM3Q9HCF6 1732 aaPredicted RBP28.53■■■□□ 2.16
VPS28-212ENST00000530836 PNISRQ8TF01 805 aaKnown RBP28.52■■■□□ 2.16
VPS28-212ENST00000530836 TTC21BQ7Z4L5 1316 aa28.52■■■□□ 2.16
VPS28-212ENST00000530836 FAM9BQ8IZU0 186 aa28.51■■■□□ 2.15
VPS28-212ENST00000530836 SHPRHQ149N8 1683 aa28.51■■■□□ 2.15
VPS28-212ENST00000530836 MORC1Q86VD1 984 aa28.51■■■□□ 2.15
VPS28-212ENST00000530836 ABTB2Q8N961 1025 aa28.5■■■□□ 2.15
VPS28-212ENST00000530836 TTC21AQ8NDW8 1320 aa28.48■■■□□ 2.15
VPS28-212ENST00000530836 EDC4Q6P2E9 1401 aaKnown RBP28.47■■■□□ 2.15
VPS28-212ENST00000530836 NUTM2BA6NNL0 878 aaPredicted RBP28.47■■■□□ 2.15
VPS28-212ENST00000530836 NUTM2EB1AL46 878 aaPredicted RBP28.47■■■□□ 2.15
VPS28-212ENST00000530836 NUTM2AQ8IVF1 878 aaPredicted RBP28.47■■■□□ 2.15
VPS28-212ENST00000530836 AKAP12Q02952 1782 aa28.47■■■□□ 2.15
VPS28-212ENST00000530836 NUTM2GQ5VZR2 741 aa28.46■■■□□ 2.15
VPS28-212ENST00000530836 ALS2Q96Q42 1657 aa28.45■■■□□ 2.15
VPS28-212ENST00000530836 SUGP2Q8IX01 1082 aaKnown RBP eCLIP28.45■■■□□ 2.14
VPS28-212ENST00000530836 COL22A1Q8NFW1 1626 aaPredicted RBP28.45■■■□□ 2.14
VPS28-212ENST00000530836 CABLES1Q8TDN4 633 aa28.44■■■□□ 2.14
VPS28-212ENST00000530836 INSRP06213 1382 aa28.43■■■□□ 2.14
VPS28-212ENST00000530836 FYB1O15117 783 aa28.42■■■□□ 2.14
VPS28-212ENST00000530836 PLEKHG5O94827 1062 aa28.42■■■□□ 2.14
VPS28-212ENST00000530836 NLRP6P59044 892 aa28.42■■■□□ 2.14
VPS28-212ENST00000530836 MON2Q7Z3U7 1717 aa28.41■■■□□ 2.14
VPS28-212ENST00000530836 HNRNPUQ00839 825 aaKnown RBP eCLIP28.4■■■□□ 2.14
VPS28-212ENST00000530836 ANKRD26Q9UPS8 1709 aa28.4■■■□□ 2.14
VPS28-212ENST00000530836 LRP6O75581 1613 aa28.4■■■□□ 2.14
VPS28-212ENST00000530836 NME9Q86XW9 330 aa28.39■■■□□ 2.13
VPS28-212ENST00000530836 NRKQ7Z2Y5 1582 aa28.39■■■□□ 2.13
VPS28-212ENST00000530836 HAP1P54257 671 aaPredicted RBP28.38■■■□□ 2.13
VPS28-212ENST00000530836 KIF20BQ96Q89 1820 aa28.38■■■□□ 2.13
VPS28-212ENST00000530836 ADAMTS2O95450 1211 aa28.37■■■□□ 2.13
VPS28-212ENST00000530836 USP19O94966 1318 aa28.37■■■□□ 2.13
VPS28-212ENST00000530836 MED1Q15648 1581 aaPredicted RBP28.36■■■□□ 2.13
VPS28-212ENST00000530836 MEX3CQ5U5Q3 659 aaKnown RBP28.36■■■□□ 2.13
VPS28-212ENST00000530836 GGNBP2Q9H3C7 697 aa28.36■■■□□ 2.13
VPS28-212ENST00000530836 ZRANB1Q9UGI0 708 aa28.36■■■□□ 2.13
VPS28-212ENST00000530836 USP31Q70CQ4 1352 aa28.35■■■□□ 2.13
VPS28-212ENST00000530836 PIK3C2AO00443 1686 aa28.33■■■□□ 2.13
VPS28-212ENST00000530836 GCP02774 474 aa28.32■■■□□ 2.12
VPS28-212ENST00000530836 WDR43Q15061 677 aaKnown RBP eCLIP28.31■■■□□ 2.12
VPS28-212ENST00000530836 CFAP53Q96M91 514 aa28.3■■■□□ 2.12
VPS28-212ENST00000530836 TNNT2P45379 298 aaPredicted RBP28.29■■■□□ 2.12
VPS28-212ENST00000530836 C8orf37Q96NL8 207 aa28.29■■■□□ 2.12
VPS28-212ENST00000530836 ZBED9Q6R2W3 1325 aa28.29■■■□□ 2.12
VPS28-212ENST00000530836 KCNH5Q8NCM2 988 aa28.28■■■□□ 2.12
VPS28-212ENST00000530836 COG3Q96JB2 828 aa28.28■■■□□ 2.12
VPS28-212ENST00000530836 NGLY1Q96IV0 654 aa28.27■■■□□ 2.12
VPS28-212ENST00000530836 FAM83GA6ND36 823 aa28.26■■■□□ 2.11
VPS28-212ENST00000530836 MTHFSP49914 203 aa28.26■■■□□ 2.11
VPS28-212ENST00000530836 ZC3H6P61129 1189 aaKnown RBP28.26■■■□□ 2.11
VPS28-212ENST00000530836 SLIT3O75094 1523 aa28.25■■■□□ 2.11
VPS28-212ENST00000530836 OVOS2A0A0J9YW53 1432 aa28.25■■■□□ 2.11
VPS28-212ENST00000530836 OVOS2Q6IE36 1432 aa28.25■■■□□ 2.11
VPS28-212ENST00000530836 CRYBG1Q9Y4K1 1723 aa28.25■■■□□ 2.11
VPS28-212ENST00000530836 ABCA3Q99758 1704 aa28.24■■■□□ 2.11
VPS28-212ENST00000530836 BLMP54132 1417 aaPredicted RBP28.24■■■□□ 2.11
VPS28-212ENST00000530836 FNBP4Q8N3X1 1017 aaPredicted RBP28.23■■■□□ 2.11
VPS28-212ENST00000530836 PHF23Q9BUL5 403 aaPredicted RBP28.23■■■□□ 2.11
VPS28-212ENST00000530836 PRDM11Q9NQV5 511 aa28.23■■■□□ 2.11
VPS28-212ENST00000530836 AATKQ6ZMQ8 1374 aa28.23■■■□□ 2.11
VPS28-212ENST00000530836 KIAA0232Q92628 1395 aa28.23■■■□□ 2.11
VPS28-212ENST00000530836 CPDO75976 1380 aa28.22■■■□□ 2.11
VPS28-212ENST00000530836 SOX12O15370 315 aa28.21■■■□□ 2.11
VPS28-212ENST00000530836 AFF2P51816 1311 aa28.21■■■□□ 2.11
VPS28-212ENST00000530836 PHRF1Q9P1Y6 1649 aaKnown RBP28.21■■■□□ 2.11
VPS28-212ENST00000530836 ADAMTS8Q9UP79 889 aa28.21■■■□□ 2.11
VPS28-212ENST00000530836 RGS17Q9UGC6 210 aaPredicted RBP28.2■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms