RNA–Protein interactions for RNA: ENST00000528739.5

CAPN1-216, Transcript of calpain 1, humanhuman

TSL 5

Gene CAPN1, Length 341 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-216ENST00000528739 FAM83GA6ND36 823 aa20.19■□□□□ 0.82
CAPN1-216ENST00000528739 POLR3AO14802 1390 aaPredicted RBP20.19■□□□□ 0.82
CAPN1-216ENST00000528739 RALGAPBQ86X10 1494 aa20.18■□□□□ 0.82
CAPN1-216ENST00000528739 GJD4Q96KN9 370 aaPredicted RBP20.17■□□□□ 0.82
CAPN1-216ENST00000528739 ZC3H6P61129 1189 aaKnown RBP20.16■□□□□ 0.82
CAPN1-216ENST00000528739 TMC1Q8TDI8 760 aa20.16■□□□□ 0.82
CAPN1-216ENST00000528739 PRDM11Q9NQV5 511 aa20.16■□□□□ 0.82
CAPN1-216ENST00000528739 BCL9LQ86UU0 1499 aa20.16■□□□□ 0.82
CAPN1-216ENST00000528739 BTG4Q9NY30 223 aa20.15■□□□□ 0.82
CAPN1-216ENST00000528739 ATRNO75882 1429 aa20.15■□□□□ 0.82
CAPN1-216ENST00000528739 TRPM3Q9HCF6 1732 aaPredicted RBP20.14■□□□□ 0.81
CAPN1-216ENST00000528739 ZBTB7CA1YPR0 619 aa20.14■□□□□ 0.81
CAPN1-216ENST00000528739 NLRP13Q86W25 1043 aa20.14■□□□□ 0.81
CAPN1-216ENST00000528739 CDK12Q9NYV4 1490 aaPredicted RBP20.13■□□□□ 0.81
CAPN1-216ENST00000528739 RGS12O14924 1447 aa20.13■□□□□ 0.81
CAPN1-216ENST00000528739 ATAD2Q6PL18 1390 aa20.13■□□□□ 0.81
CAPN1-216ENST00000528739 A0A0G2JS52 829 aa20.13■□□□□ 0.81
CAPN1-216ENST00000528739 MYT1Q01538 1121 aa20.13■□□□□ 0.81
CAPN1-216ENST00000528739 CLSPNQ9HAW4 1339 aa20.12■□□□□ 0.81
CAPN1-216ENST00000528739 ST20-MTHFSA0A0A6YYL1 179 aa20.12■□□□□ 0.81
CAPN1-216ENST00000528739 NLRP6P59044 892 aa20.12■□□□□ 0.81
CAPN1-216ENST00000528739 CHRNA2Q15822 529 aa20.12■□□□□ 0.81
CAPN1-216ENST00000528739 ZNF692Q9BU19 519 aaPredicted RBP20.12■□□□□ 0.81
CAPN1-216ENST00000528739 MARF1Q9Y4F3 1742 aaKnown RBP20.12■□□□□ 0.81
CAPN1-216ENST00000528739 SLIT2O94813 1529 aa20.12■□□□□ 0.81
CAPN1-216ENST00000528739 TOPAZ1Q8N9V7 1692 aa20.11■□□□□ 0.81
CAPN1-216ENST00000528739 ALS2Q96Q42 1657 aa20.1■□□□□ 0.81
CAPN1-216ENST00000528739 VPS72Q15906 364 aa20.1■□□□□ 0.81
CAPN1-216ENST00000528739 TIMELESSQ9UNS1 1208 aa20.1■□□□□ 0.81
CAPN1-216ENST00000528739 KIAA0232Q92628 1395 aa20.09■□□□□ 0.81
CAPN1-216ENST00000528739 EVA1CP58658 441 aa20.09■□□□□ 0.81
CAPN1-216ENST00000528739 UPF1Q92900 1129 aaKnown RBP eCLIP20.09■□□□□ 0.81
CAPN1-216ENST00000528739 STRN4Q9NRL3 753 aa20.09■□□□□ 0.81
CAPN1-216ENST00000528739 USP6P35125 1406 aa20.08■□□□□ 0.8
CAPN1-216ENST00000528739 SLC24A1O60721 1099 aa20.07■□□□□ 0.8
CAPN1-216ENST00000528739 HDGFL2Q7Z4V5 671 aaPredicted RBP20.07■□□□□ 0.8
CAPN1-216ENST00000528739 BRD4O60885 1362 aaPredicted RBP20.07■□□□□ 0.8
CAPN1-216ENST00000528739 KTN1Q86UP2 1357 aaKnown RBP20.07■□□□□ 0.8
CAPN1-216ENST00000528739 SBNO2Q9Y2G9 1366 aa20.07■□□□□ 0.8
CAPN1-216ENST00000528739 SOX12O15370 315 aa20.06■□□□□ 0.8
CAPN1-216ENST00000528739 GCP02774 474 aa20.06■□□□□ 0.8
CAPN1-216ENST00000528739 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.06■□□□□ 0.8
CAPN1-216ENST00000528739 TTC21BQ7Z4L5 1316 aa20.05■□□□□ 0.8
CAPN1-216ENST00000528739 SLC12A5Q9H2X9 1139 aa20.05■□□□□ 0.8
CAPN1-216ENST00000528739 ABCA3Q99758 1704 aa20.05■□□□□ 0.8
CAPN1-216ENST00000528739 SEPT12Q8IYM1 358 aa20.04■□□□□ 0.8
CAPN1-216ENST00000528739 FAM98CQ17RN3 349 aaKnown RBP20.03■□□□□ 0.8
CAPN1-216ENST00000528739 TERF2IPQ9NYB0 399 aa20.03■□□□□ 0.8
CAPN1-216ENST00000528739 USP47Q96K76 1375 aa20.03■□□□□ 0.8
CAPN1-216ENST00000528739 TMF1P82094 1093 aa20.02■□□□□ 0.8
CAPN1-216ENST00000528739 TESK2Q96S53 571 aa20.02■□□□□ 0.8
CAPN1-216ENST00000528739 USP35Q9P2H5 1018 aa20.02■□□□□ 0.8
CAPN1-216ENST00000528739 PLCH1Q4KWH8 1693 aa20.02■□□□□ 0.8
CAPN1-216ENST00000528739 USP19O94966 1318 aa20.02■□□□□ 0.79
CAPN1-216ENST00000528739 TTC21AQ8NDW8 1320 aa20.01■□□□□ 0.79
CAPN1-216ENST00000528739 COL14A1Q05707 1796 aaKnown RBP20■□□□□ 0.79
CAPN1-216ENST00000528739 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.99■□□□□ 0.79
CAPN1-216ENST00000528739 PUS7Q96PZ0 661 aaKnown RBP19.99■□□□□ 0.79
CAPN1-216ENST00000528739 NWD2Q9ULI1 1742 aa19.99■□□□□ 0.79
CAPN1-216ENST00000528739 KCNH5Q8NCM2 988 aa19.98■□□□□ 0.79
CAPN1-216ENST00000528739 CPSF1Q10570 1443 aaKnown RBP19.98■□□□□ 0.79
CAPN1-216ENST00000528739 GLI3P10071 1580 aa19.98■□□□□ 0.79
CAPN1-216ENST00000528739 SPATA31A5Q5VU36 1347 aa19.98■□□□□ 0.79
CAPN1-216ENST00000528739 SPATA31A7Q8IWB4 1347 aa19.98■□□□□ 0.79
CAPN1-216ENST00000528739 PHRF1Q9P1Y6 1649 aaKnown RBP19.98■□□□□ 0.79
CAPN1-216ENST00000528739 SSH2Q76I76 1423 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 CDCA8Q53HL2 280 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 KRT27Q7Z3Y8 459 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 NME9Q86XW9 330 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 POLR3GLQ9BT43 218 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 ZRANB1Q9UGI0 708 aa19.96■□□□□ 0.79
CAPN1-216ENST00000528739 CPDO75976 1380 aa19.95■□□□□ 0.79
CAPN1-216ENST00000528739 LARP1Q6PKG0 1096 aaKnown RBP19.95■□□□□ 0.78
CAPN1-216ENST00000528739 CRYBG1Q9Y4K1 1723 aa19.94■□□□□ 0.78
CAPN1-216ENST00000528739 ONECUT3O60422 494 aaPredicted RBP19.94■□□□□ 0.78
CAPN1-216ENST00000528739 NRKQ7Z2Y5 1582 aa19.94■□□□□ 0.78
CAPN1-216ENST00000528739 SF3B2Q13435 895 aaKnown RBP19.93■□□□□ 0.78
CAPN1-216ENST00000528739 SPATA31A1Q5TZJ5 1347 aa19.93■□□□□ 0.78
CAPN1-216ENST00000528739 CSB-PGBD3P0DP91 1061 aa19.92■□□□□ 0.78
CAPN1-216ENST00000528739 A0A1W2PP64 1363 aa19.92■□□□□ 0.78
CAPN1-216ENST00000528739 TOM1L2Q6ZVM7 507 aa19.91■□□□□ 0.78
CAPN1-216ENST00000528739 NINLQ9Y2I6 1382 aa19.91■□□□□ 0.78
CAPN1-216ENST00000528739 NRAPQ86VF7 1730 aa19.9■□□□□ 0.78
CAPN1-216ENST00000528739 TCP11L2Q8N4U5 519 aa19.9■□□□□ 0.78
CAPN1-216ENST00000528739 EDC4Q6P2E9 1401 aaKnown RBP19.9■□□□□ 0.78
CAPN1-216ENST00000528739 PIK3C2AO00443 1686 aa19.9■□□□□ 0.78
CAPN1-216ENST00000528739 AKAP12Q02952 1782 aa19.9■□□□□ 0.78
CAPN1-216ENST00000528739 EIF4G2P78344 907 aaKnown RBP eCLIP19.89■□□□□ 0.77
CAPN1-216ENST00000528739 FAM182BQ5T319 152 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 AATKQ6ZMQ8 1374 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 ARHGEF25Q86VW2 580 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 CCDC125Q86Z20 511 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 CD163L1Q9NR16 1453 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 CAMTA1Q9Y6Y1 1673 aa19.89■□□□□ 0.77
CAPN1-216ENST00000528739 SLIT3O75094 1523 aa19.88■□□□□ 0.77
CAPN1-216ENST00000528739 PDE3BQ13370 1112 aa19.88■□□□□ 0.77
CAPN1-216ENST00000528739 COG3Q96JB2 828 aa19.87■□□□□ 0.77
CAPN1-216ENST00000528739 AXIN2Q9Y2T1 843 aa19.87■□□□□ 0.77
CAPN1-216ENST00000528739 USP31Q70CQ4 1352 aa19.85■□□□□ 0.77
CAPN1-216ENST00000528739 HSPA5P11021 654 aaKnown RBP19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms