RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 FAM98CQ17RN3 349 aaKnown RBP21.12■□□□□ 0.97
CPSF1-201ENST00000526271 TNS1Q9HBL0 1735 aaKnown RBP21.12■□□□□ 0.97
CPSF1-201ENST00000526271 LRP5O75197 1615 aa21.11■□□□□ 0.97
CPSF1-201ENST00000526271 DCAF11Q8TEB1 546 aa21.11■□□□□ 0.97
CPSF1-201ENST00000526271 CCDC9Q9Y3X0 531 aaKnown RBP21.11■□□□□ 0.97
CPSF1-201ENST00000526271 FAM182BQ5T319 152 aa21.1■□□□□ 0.97
CPSF1-201ENST00000526271 ITSN1Q15811 1721 aa21.09■□□□□ 0.97
CPSF1-201ENST00000526271 SPATA31A5Q5VU36 1347 aa21.08■□□□□ 0.97
CPSF1-201ENST00000526271 SPATA31A7Q8IWB4 1347 aa21.08■□□□□ 0.97
CPSF1-201ENST00000526271 RGPD1P0DJD0 1748 aa21.07■□□□□ 0.96
CPSF1-201ENST00000526271 GPRASP1Q5JY77 1395 aa21.06■□□□□ 0.96
CPSF1-201ENST00000526271 NUDT16Q96DE0 195 aaKnown RBP21.04■□□□□ 0.96
CPSF1-201ENST00000526271 EIF3AQ14152 1382 aaKnown RBP21.04■□□□□ 0.96
CPSF1-201ENST00000526271 KIAA0232Q92628 1395 aa21.04■□□□□ 0.96
CPSF1-201ENST00000526271 PSDA5PKW4 1024 aaPredicted RBP21.03■□□□□ 0.96
CPSF1-201ENST00000526271 NRKQ7Z2Y5 1582 aa21.02■□□□□ 0.96
CPSF1-201ENST00000526271 POLR3AO14802 1390 aaPredicted RBP21.02■□□□□ 0.96
CPSF1-201ENST00000526271 CHRNA2Q15822 529 aa21.02■□□□□ 0.96
CPSF1-201ENST00000526271 NGDNQ8NEJ9 315 aaKnown RBP21.02■□□□□ 0.96
CPSF1-201ENST00000526271 LMO7Q8WWI1 1683 aa21.02■□□□□ 0.95
CPSF1-201ENST00000526271 KIAA1210Q9ULL0 1709 aa21.01■□□□□ 0.95
CPSF1-201ENST00000526271 EN1Q05925 392 aaPredicted RBP21.01■□□□□ 0.95
CPSF1-201ENST00000526271 DISP2A7MBM2 1401 aa21.01■□□□□ 0.95
CPSF1-201ENST00000526271 SPATA31A1Q5TZJ5 1347 aa21.01■□□□□ 0.95
CPSF1-201ENST00000526271 NUTM2GQ5VZR2 741 aa21■□□□□ 0.95
CPSF1-201ENST00000526271 CAMTA1Q9Y6Y1 1673 aa20.99■□□□□ 0.95
CPSF1-201ENST00000526271 PAK3O75914 559 aaPredicted RBP20.99■□□□□ 0.95
CPSF1-201ENST00000526271 HRCP23327 699 aa20.99■□□□□ 0.95
CPSF1-201ENST00000526271 SF3B2Q13435 895 aaKnown RBP20.99■□□□□ 0.95
CPSF1-201ENST00000526271 NBPF1Q3BBV0 1214 aa20.99■□□□□ 0.95
CPSF1-201ENST00000526271 CDK19Q9BWU1 502 aa20.99■□□□□ 0.95
CPSF1-201ENST00000526271 PRDM11Q9NQV5 511 aa20.99■□□□□ 0.95
CPSF1-201ENST00000526271 A0A0G2JS52 829 aa20.98■□□□□ 0.95
CPSF1-201ENST00000526271 MYT1Q01538 1121 aa20.98■□□□□ 0.95
CPSF1-201ENST00000526271 ACEP12821 1306 aa20.97■□□□□ 0.95
CPSF1-201ENST00000526271 BAG6P46379 1132 aa20.96■□□□□ 0.95
CPSF1-201ENST00000526271 ZC3H6P61129 1189 aaKnown RBP20.96■□□□□ 0.95
CPSF1-201ENST00000526271 STAC3Q96MF2 364 aa20.96■□□□□ 0.95
CPSF1-201ENST00000526271 NBPF8Q3BBV2 869 aa20.95■□□□□ 0.94
CPSF1-201ENST00000526271 RREB1Q92766 1687 aa20.95■□□□□ 0.94
CPSF1-201ENST00000526271 PLEKHG3A1L390 1219 aa20.94■□□□□ 0.94
CPSF1-201ENST00000526271 SSH2Q76I76 1423 aa20.94■□□□□ 0.94
CPSF1-201ENST00000526271 EZH2Q15910 746 aaKnown RBP20.93■□□□□ 0.94
CPSF1-201ENST00000526271 USP19O94966 1318 aa20.93■□□□□ 0.94
CPSF1-201ENST00000526271 CAMKK2Q96RR4 588 aa20.92■□□□□ 0.94
CPSF1-201ENST00000526271 NUP188Q5SRE5 1749 aa20.92■□□□□ 0.94
CPSF1-201ENST00000526271 STRN4Q9NRL3 753 aa20.91■□□□□ 0.94
CPSF1-201ENST00000526271 CCDC61Q9Y6R9 512 aa20.91■□□□□ 0.94
CPSF1-201ENST00000526271 TRIM37O94972 964 aa20.9■□□□□ 0.94
CPSF1-201ENST00000526271 R3HDM1Q15032 1099 aaKnown RBP20.9■□□□□ 0.94
CPSF1-201ENST00000526271 LARP1Q6PKG0 1096 aaKnown RBP20.9■□□□□ 0.94
CPSF1-201ENST00000526271 CPDO75976 1380 aa20.89■□□□□ 0.93
CPSF1-201ENST00000526271 QRICH2Q9H0J4 1663 aa20.89■□□□□ 0.93
CPSF1-201ENST00000526271 COL18A1P39060 1754 aa20.88■□□□□ 0.93
CPSF1-201ENST00000526271 PEAK1Q9H792 1746 aa20.88■□□□□ 0.93
CPSF1-201ENST00000526271 PARP4Q9UKK3 1724 aaKnown RBP20.87■□□□□ 0.93
CPSF1-201ENST00000526271 BARGINQ6ZT62 677 aa20.87■□□□□ 0.93
CPSF1-201ENST00000526271 USP35Q9P2H5 1018 aa20.87■□□□□ 0.93
CPSF1-201ENST00000526271 PPIP5K1Q6PFW1 1433 aa20.87■□□□□ 0.93
CPSF1-201ENST00000526271 COL5A2P05997 1499 aaPredicted RBP20.86■□□□□ 0.93
CPSF1-201ENST00000526271 CABP2Q9NPB3 220 aa20.85■□□□□ 0.93
CPSF1-201ENST00000526271 PIK3C2AO00443 1686 aa20.85■□□□□ 0.93
CPSF1-201ENST00000526271 SLIT3O75094 1523 aa20.84■□□□□ 0.93
CPSF1-201ENST00000526271 SBF2Q86WG5 1849 aa20.84■□□□□ 0.93
CPSF1-201ENST00000526271 ABTB2Q8N961 1025 aa20.84■□□□□ 0.93
CPSF1-201ENST00000526271 FAM196AQ6ZSG2 479 aa20.83■□□□□ 0.93
CPSF1-201ENST00000526271 LRRC37A3O60309 1634 aa20.82■□□□□ 0.92
CPSF1-201ENST00000526271 GCP02774 474 aa20.82■□□□□ 0.92
CPSF1-201ENST00000526271 WNK3Q9BYP7 1800 aa20.82■□□□□ 0.92
CPSF1-201ENST00000526271 USP6P35125 1406 aa20.81■□□□□ 0.92
CPSF1-201ENST00000526271 CENPJQ9HC77 1338 aaPredicted RBP20.8■□□□□ 0.92
CPSF1-201ENST00000526271 RGPD5Q99666 1765 aa20.8■□□□□ 0.92
CPSF1-201ENST00000526271 TRPM1Q7Z4N2 1603 aa20.8■□□□□ 0.92
CPSF1-201ENST00000526271 TCP11L2Q8N4U5 519 aa20.8■□□□□ 0.92
CPSF1-201ENST00000526271 APBA3O96018 575 aa20.79■□□□□ 0.92
CPSF1-201ENST00000526271 PTF1AQ7RTS3 328 aa20.78■□□□□ 0.92
CPSF1-201ENST00000526271 AKAP12Q02952 1782 aa20.77■□□□□ 0.92
CPSF1-201ENST00000526271 EVA1CP58658 441 aa20.77■□□□□ 0.92
CPSF1-201ENST00000526271 SRPK2P78362 688 aaKnown RBP20.77■□□□□ 0.92
CPSF1-201ENST00000526271 CABP1Q9NZU7 370 aa20.77■□□□□ 0.92
CPSF1-201ENST00000526271 PARD3Q8TEW0 1356 aa20.76■□□□□ 0.91
CPSF1-201ENST00000526271 NLRP13Q86W25 1043 aa20.75■□□□□ 0.91
CPSF1-201ENST00000526271 AXIN2Q9Y2T1 843 aa20.75■□□□□ 0.91
CPSF1-201ENST00000526271 CRB1P82279 1406 aa20.74■□□□□ 0.91
CPSF1-201ENST00000526271 PDE3BQ13370 1112 aa20.74■□□□□ 0.91
CPSF1-201ENST00000526271 L3MBTL2Q969R5 705 aa20.74■□□□□ 0.91
CPSF1-201ENST00000526271 AATKQ6ZMQ8 1374 aa20.73■□□□□ 0.91
CPSF1-201ENST00000526271 RGPD3A6NKT7 1758 aaPredicted RBP20.73■□□□□ 0.91
CPSF1-201ENST00000526271 RGPD4Q7Z3J3 1758 aa20.73■□□□□ 0.91
CPSF1-201ENST00000526271 THRAP3Q9Y2W1 955 aaKnown RBP20.72■□□□□ 0.91
CPSF1-201ENST00000526271 BRD4O60885 1362 aaPredicted RBP20.72■□□□□ 0.91
CPSF1-201ENST00000526271 SIN3AQ96ST3 1273 aa20.71■□□□□ 0.91
CPSF1-201ENST00000526271 NFAT5O94916 1531 aa20.71■□□□□ 0.91
CPSF1-201ENST00000526271 CASZ1Q86V15 1759 aa20.71■□□□□ 0.91
CPSF1-201ENST00000526271 NLRP6P59044 892 aa20.69■□□□□ 0.9
CPSF1-201ENST00000526271 CPSF1Q10570 1443 aaKnown RBP20.69■□□□□ 0.9
CPSF1-201ENST00000526271 ANO8Q9HCE9 1232 aaPredicted RBP20.68■□□□□ 0.9
CPSF1-201ENST00000526271 OVOS2A0A0G2JMS6 1433 aa20.68■□□□□ 0.9
CPSF1-201ENST00000526271 OVOS2A0A0J9YW53 1432 aa20.68■□□□□ 0.9
CPSF1-201ENST00000526271 OVOS2Q6IE36 1432 aa20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms