RNA–Protein interactions for RNA: ENST00000508342.5

NEDD4-208, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,235 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-208ENST00000508342 SHANK2Q9UPX8 1470 aa3.82□□□□□ -1.8
NEDD4-208ENST00000508342 BTG4Q9NY30 223 aa3.82□□□□□ -1.8
NEDD4-208ENST00000508342 KIAA1107Q9UPP5 1409 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 KCNJ4P48050 445 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 TRIM34Q9BYJ4 488 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 PHF8Q9UPP1 1060 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 ZNF526Q8TF50 670 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-208ENST00000508342 CLSTN1O94985 981 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 SALL2Q9Y467 1007 aaPredicted RBP3.81□□□□□ -1.8
NEDD4-208ENST00000508342 MYO5BQ9ULV0 1848 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 TFCP2L1Q9NZI6 479 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 ITSN1Q15811 1721 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 TET3O43151 1660 aa3.81□□□□□ -1.8
NEDD4-208ENST00000508342 SETQ01105 290 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 KCNH5Q8NCM2 988 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 KIDINS220Q9ULH0 1771 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 NOS1P29475 1434 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 KTN1Q86UP2 1357 aaKnown RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 KRT27Q7Z3Y8 459 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 CABLES1Q8TDN4 633 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 ADGRB3O60242 1522 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 BRD2P25440 801 aaKnown RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 OS9Q13438 667 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 IDI1Q13907 227 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 BICDL1Q6ZP65 573 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 TMOD3Q9NYL9 352 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 PARP3Q9Y6F1 533 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 ZMYM4Q5VZL5 1548 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 RFC4P35249 363 aa3.8□□□□□ -1.8
NEDD4-208ENST00000508342 ZNF219Q9P2Y4 722 aaPredicted RBP3.8□□□□□ -1.8
NEDD4-208ENST00000508342 FAM177BA6PVY3 158 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 FRAT2O75474 233 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 ZNF142P52746 1687 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 JCADQ9P266 1359 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 ABCC5O15440 1437 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 RBM6P78332 1123 aaKnown RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 TTLL12Q14166 644 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 DDB1Q16531 1140 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 DIEXFQ68CQ4 756 aaKnown RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 WDR70Q9NW82 654 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 CIZ1Q9ULV3 898 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 ERVK-7P63135 1459 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 C11orf95C9JLR9 678 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 TRIM37O94972 964 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 CHRNA2Q15822 529 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 UBE2Q2Q8WVN8 375 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 BEGAINQ9BUH8 593 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 TMEM94Q12767 1356 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 ADAMTSL3P82987 1691 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 ST5P78524 1137 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 NUDT16Q96DE0 195 aaKnown RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 WWC3Q9ULE0 1092 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 SPATA31A6Q5VVP1 1343 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 RAB3GAP2Q9H2M9 1393 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 NALCNQ8IZF0 1738 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 PRM3Q9NNZ6 103 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 CENPJQ9HC77 1338 aaPredicted RBP3.79□□□□□ -1.8
NEDD4-208ENST00000508342 PZPP20742 1482 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 PLCD3Q8N3E9 789 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 RSPH6AQ9H0K4 717 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 CGNL1Q0VF96 1302 aa3.79□□□□□ -1.8
NEDD4-208ENST00000508342 MLH3Q9UHC1 1453 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ZNF692Q9BU19 519 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-208ENST00000508342 PLEKHO1Q53GL0 409 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ARHGEF10O15013 1369 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 CDC42BPGQ6DT37 1551 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 CAPN15O75808 1086 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 MPRIPQ6WCQ1 1025 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ZNF622Q969S3 477 aaKnown RBP eCLIP3.78□□□□□ -1.83e-6■■■□□ 16.2
NEDD4-208ENST00000508342 SIN3AQ96ST3 1273 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 IFT172Q9UG01 1749 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ROBO1Q9Y6N7 1651 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 TEFQ10587 303 aa3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ZRSR1Q15695 479 aaKnown RBP3.78□□□□□ -1.8
NEDD4-208ENST00000508342 CTDP1Q9Y5B0 961 aaPredicted RBP3.78□□□□□ -1.8
NEDD4-208ENST00000508342 ABCC3O15438 1527 aa3.78□□□□□ -1.81
NEDD4-208ENST00000508342 PSDA5PKW4 1024 aaPredicted RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 SYNMO15061 1565 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 PLXNC1O60486 1568 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 SPDYE4A6NLX3 237 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 PLEKHG1Q9ULL1 1385 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 DIP2AQ14689 1571 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 ARHGEF12Q9NZN5 1544 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 HSP90AB1P08238 724 aaKnown RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 LMOD1P29536 600 aaPredicted RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 UNC5CLQ8IV45 518 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 CCAR1Q8IX12 1150 aaKnown RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 SPOCK2Q92563 424 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 NOP58Q9Y2X3 529 aaKnown RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 PTPRTO14522 1441 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 INO80Q9ULG1 1556 aaPredicted RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 VPS37DQ86XT2 251 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 NOL10Q9BSC4 688 aaKnown RBP3.77□□□□□ -1.81
NEDD4-208ENST00000508342 UBR1Q8IWV7 1749 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 TMEM2Q9UHN6 1383 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 PPIP5K1Q6PFW1 1433 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 FRMPD1Q5SYB0 1578 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 ANKRD30BQ9BXX2 1392 aa3.77□□□□□ -1.81
NEDD4-208ENST00000508342 YY1P25490 414 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms