RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 CHD1O14646 1710 aa17.49■□□□□ 0.39
TCOF1-207ENST00000504761 PDE3AQ14432 1141 aa17.49■□□□□ 0.39
TCOF1-207ENST00000504761 CFAP44Q96MT7 982 aa17.49■□□□□ 0.39
TCOF1-207ENST00000504761 TOM1L2Q6ZVM7 507 aa17.49■□□□□ 0.39
TCOF1-207ENST00000504761 HDGFL1Q5TGJ6 251 aa17.48■□□□□ 0.39
TCOF1-207ENST00000504761 GPATCH3Q96I76 525 aa17.48■□□□□ 0.39
TCOF1-207ENST00000504761 RIC3Q7Z5B4 369 aa17.48■□□□□ 0.39
TCOF1-207ENST00000504761 ATF7IPQ6VMQ6 1270 aa17.47■□□□□ 0.39
TCOF1-207ENST00000504761 DDX58O95786 925 aaKnown RBP17.47■□□□□ 0.39
TCOF1-207ENST00000504761 YEATS2Q9ULM3 1422 aa17.47■□□□□ 0.39
TCOF1-207ENST00000504761 NUTM2BA6NNL0 878 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-207ENST00000504761 NUTM2EB1AL46 878 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-207ENST00000504761 TATP17735 454 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-207ENST00000504761 CCDC30Q5VVM6 783 aa17.46■□□□□ 0.39
TCOF1-207ENST00000504761 NUTM2AQ8IVF1 878 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-207ENST00000504761 AEBP2Q6ZN18 517 aaPredicted RBP17.46■□□□□ 0.39
TCOF1-207ENST00000504761 HSP90AB2PQ58FF8 381 aa17.45■□□□□ 0.38
TCOF1-207ENST00000504761 DUSP27Q5VZP5 1158 aa17.45■□□□□ 0.38
TCOF1-207ENST00000504761 SSH1Q8WYL5 1049 aa17.45■□□□□ 0.38
TCOF1-207ENST00000504761 GZF1Q9H116 711 aaPredicted RBP17.45■□□□□ 0.38
TCOF1-207ENST00000504761 FAM83GA6ND36 823 aa17.44■□□□□ 0.38
TCOF1-207ENST00000504761 PDZRN3Q9UPQ7 1066 aa17.44■□□□□ 0.38
TCOF1-207ENST00000504761 UBTFL1P0CB47 393 aaPredicted RBP17.44■□□□□ 0.38
TCOF1-207ENST00000504761 HSPA2P54652 639 aa17.44■□□□□ 0.38
TCOF1-207ENST00000504761 TTC37Q6PGP7 1564 aa17.44■□□□□ 0.38
TCOF1-207ENST00000504761 PIP4K2BP78356 416 aa17.43■□□□□ 0.38
TCOF1-207ENST00000504761 SAMD9LQ8IVG5 1584 aa17.43■□□□□ 0.38
TCOF1-207ENST00000504761 ARHGEF12Q9NZN5 1544 aa17.43■□□□□ 0.38
TCOF1-207ENST00000504761 RARSP54136 660 aaKnown RBP17.42■□□□□ 0.38
TCOF1-207ENST00000504761 KCNA6P17658 529 aa17.42■□□□□ 0.38
TCOF1-207ENST00000504761 PLCB2Q00722 1185 aa17.41■□□□□ 0.38
TCOF1-207ENST00000504761 PARD3Q8TEW0 1356 aa17.41■□□□□ 0.38
TCOF1-207ENST00000504761 ANKRD36BQ8N2N9 1353 aa17.41■□□□□ 0.38
TCOF1-207ENST00000504761 MVPQ14764 893 aaKnown RBP17.41■□□□□ 0.38
TCOF1-207ENST00000504761 NPATQ14207 1427 aa17.41■□□□□ 0.38
TCOF1-207ENST00000504761 KCNH5Q8NCM2 988 aa17.41■□□□□ 0.38
TCOF1-207ENST00000504761 RBM42Q9BTD8 480 aaKnown RBP17.41■□□□□ 0.38
TCOF1-207ENST00000504761 TMEM57Q8N5G2 664 aa17.4■□□□□ 0.38
TCOF1-207ENST00000504761 ATP10AO60312 1499 aa17.4■□□□□ 0.38
TCOF1-207ENST00000504761 FANCIQ9NVI1 1328 aa17.4■□□□□ 0.38
TCOF1-207ENST00000504761 UHRF1BP1Q6BDS2 1440 aa17.4■□□□□ 0.38
TCOF1-207ENST00000504761 FOXD4L5Q5VV16 416 aaPredicted RBP17.4■□□□□ 0.38
TCOF1-207ENST00000504761 FOXD4L4Q8WXT5 416 aaPredicted RBP17.4■□□□□ 0.38
TCOF1-207ENST00000504761 MAST1Q9Y2H9 1570 aa17.4■□□□□ 0.38
TCOF1-207ENST00000504761 MEX3CQ5U5Q3 659 aaKnown RBP17.39■□□□□ 0.38
TCOF1-207ENST00000504761 TTC21BQ7Z4L5 1316 aa17.39■□□□□ 0.37
TCOF1-207ENST00000504761 GNAT3A8MTJ3 354 aa17.39■□□□□ 0.37
TCOF1-207ENST00000504761 SURF6O75683 361 aaKnown RBP17.39■□□□□ 0.37
TCOF1-207ENST00000504761 IFIT2P09913 472 aaKnown RBP17.39■□□□□ 0.37
TCOF1-207ENST00000504761 MYL6BP14649 208 aa17.39■□□□□ 0.37
TCOF1-207ENST00000504761 G3BP1Q13283 466 aaKnown RBP eCLIP17.39■□□□□ 0.372e-7■■■■□ 22.1
TCOF1-207ENST00000504761 KRT28Q7Z3Y7 464 aa17.39■□□□□ 0.37
TCOF1-207ENST00000504761 FAM177BA6PVY3 158 aa17.38■□□□□ 0.37
TCOF1-207ENST00000504761 FRAT2O75474 233 aaPredicted RBP17.38■□□□□ 0.37
TCOF1-207ENST00000504761 POLKQ9UBT6 870 aa17.38■□□□□ 0.37
TCOF1-207ENST00000504761 AEBP1Q8IUX7 1158 aa17.38■□□□□ 0.37
TCOF1-207ENST00000504761 TRIM44Q96DX7 344 aaPredicted RBP17.38■□□□□ 0.37
TCOF1-207ENST00000504761 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
TCOF1-207ENST00000504761 CABP4P57796 275 aa17.37■□□□□ 0.37
TCOF1-207ENST00000504761 MPRIPQ6WCQ1 1025 aa17.37■□□□□ 0.37
TCOF1-207ENST00000504761 BTBD11A6QL63 1104 aa17.37■□□□□ 0.37
TCOF1-207ENST00000504761 CHRNA2Q15822 529 aa17.37■□□□□ 0.37
TCOF1-207ENST00000504761 ARHGEF5Q12774 1597 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 ASXL1Q8IXJ9 1541 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 YTHDC2Q9H6S0 1430 aaKnown RBP17.36■□□□□ 0.37
TCOF1-207ENST00000504761 GOLGA6L4A6NEF3 574 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 CT47B1P0C2W7 299 aaPredicted RBP17.36■□□□□ 0.37
TCOF1-207ENST00000504761 GNAI3P08754 354 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 MYO5CQ9NQX4 1742 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 A0A1W2PP64 1363 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 ANO2Q9NQ90 1003 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 DIAPH3Q9NSV4 1193 aa17.36■□□□□ 0.37
TCOF1-207ENST00000504761 MSH5O43196 834 aa17.35■□□□□ 0.37
TCOF1-207ENST00000504761 AAMPQ13685 434 aa17.35■□□□□ 0.37
TCOF1-207ENST00000504761 ZRSR1Q15695 479 aaKnown RBP17.35■□□□□ 0.37
TCOF1-207ENST00000504761 GCC2Q8IWJ2 1684 aa17.35■□□□□ 0.37
TCOF1-207ENST00000504761 NSD2O96028 1365 aa17.35■□□□□ 0.37
TCOF1-207ENST00000504761 SPG7Q9UQ90 795 aa17.35■□□□□ 0.37
TCOF1-207ENST00000504761 NEO1Q92859 1461 aa17.34■□□□□ 0.37
TCOF1-207ENST00000504761 DEKP35659 375 aaKnown RBP17.33■□□□□ 0.37
TCOF1-207ENST00000504761 FOXD4L6Q3SYB3 417 aaPredicted RBP17.33■□□□□ 0.37
TCOF1-207ENST00000504761 FOXD4L3Q6VB84 417 aaPredicted RBP17.33■□□□□ 0.37
TCOF1-207ENST00000504761 ISY1Q9ULR0 285 aaKnown RBP17.33■□□□□ 0.37
TCOF1-207ENST00000504761 F6X3S4 739 aa17.33■□□□□ 0.37
TCOF1-207ENST00000504761 ST18O60284 1047 aa17.33■□□□□ 0.37
TCOF1-207ENST00000504761 PTCD1O75127 700 aaKnown RBP17.33■□□□□ 0.37
TCOF1-207ENST00000504761 NEUROD6Q96NK8 337 aa17.33■□□□□ 0.37
TCOF1-207ENST00000504761 NINLQ9Y2I6 1382 aa17.33■□□□□ 0.36
TCOF1-207ENST00000504761 RTN4Q9NQC3 1192 aaKnown RBP17.33■□□□□ 0.36
TCOF1-207ENST00000504761 GNAI2P04899 355 aa17.32■□□□□ 0.36
TCOF1-207ENST00000504761 LTKP29376 864 aa17.32■□□□□ 0.36
TCOF1-207ENST00000504761 TOMM22Q9NS69 142 aa17.32■□□□□ 0.36
TCOF1-207ENST00000504761 ZCCHC11Q5TAX3 1644 aaKnown RBP17.32■□□□□ 0.36
TCOF1-207ENST00000504761 COL17A1Q9UMD9 1497 aaPredicted RBP17.32■□□□□ 0.36
TCOF1-207ENST00000504761 PTMAP06454 111 aaKnown RBP17.32■□□□□ 0.36
TCOF1-207ENST00000504761 IFT57Q9NWB7 429 aa17.32■□□□□ 0.36
TCOF1-207ENST00000504761 UGGT1Q9NYU2 1555 aa17.31■□□□□ 0.36
TCOF1-207ENST00000504761 HSP90B1P14625 803 aaKnown RBP17.31■□□□□ 0.36
TCOF1-207ENST00000504761 NKTRP30414 1462 aaKnown RBP17.31■□□□□ 0.36
TCOF1-207ENST00000504761 C22orf23Q9BZE7 217 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms