RNA–Protein interactions for RNA: ENST00000504387.5

NEDD9-208, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene NEDD9, Length 3,211 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-208ENST00000504387 SOX12O15370 315 aa9.44□□□□□ -0.9
NEDD9-208ENST00000504387 ITSN2Q9NZM3 1697 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 SCAPERQ9BY12 1400 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.43□□□□□ -0.9
NEDD9-208ENST00000504387 KIF2CQ99661 725 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 SKOR2Q2VWA4 1001 aaPredicted RBP9.43□□□□□ -0.9
NEDD9-208ENST00000504387 DDX19BQ9UMR2 479 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 SPDYE4A6NLX3 237 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 NPM1P06748 294 aaKnown RBP eCLIP9.43□□□□□ -0.9
NEDD9-208ENST00000504387 SMC5Q8IY18 1101 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 PRDM4Q9UKN5 801 aa9.43□□□□□ -0.9
NEDD9-208ENST00000504387 CLASP1Q7Z460 1538 aa9.42□□□□□ -0.9
NEDD9-208ENST00000504387 MINK1Q8N4C8 1332 aaPredicted RBP9.42□□□□□ -0.9
NEDD9-208ENST00000504387 GPRASP1Q5JY77 1395 aa9.42□□□□□ -0.9
NEDD9-208ENST00000504387 TRAPPC8Q9Y2L5 1435 aa9.42□□□□□ -0.9
NEDD9-208ENST00000504387 ASXL1Q8IXJ9 1541 aa9.41□□□□□ -0.9
NEDD9-208ENST00000504387 ABCC10Q5T3U5 1492 aa9.41□□□□□ -0.9
NEDD9-208ENST00000504387 SMARCA5O60264 1052 aaPredicted RBP9.41□□□□□ -0.9
NEDD9-208ENST00000504387 OTUD7AQ8TE49 926 aaPredicted RBP9.41□□□□□ -0.9
NEDD9-208ENST00000504387 RTEL1-TNFRSF6BF6WH68 1400 aa9.41□□□□□ -0.9
NEDD9-208ENST00000504387 NSD3Q9BZ95 1437 aa9.41□□□□□ -0.9
NEDD9-208ENST00000504387 TRPM1Q7Z4N2 1603 aa9.4□□□□□ -0.9
NEDD9-208ENST00000504387 MLECQ14165 292 aa9.4□□□□□ -0.9
NEDD9-208ENST00000504387 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.4□□□□□ -0.9
NEDD9-208ENST00000504387 HMOX1P09601 288 aa9.4□□□□□ -0.91
NEDD9-208ENST00000504387 RBM25P49756 843 aaKnown RBP9.4□□□□□ -0.91
NEDD9-208ENST00000504387 NUCB1Q02818 461 aa9.4□□□□□ -0.91
NEDD9-208ENST00000504387 KLHL40Q2TBA0 621 aa9.4□□□□□ -0.91
NEDD9-208ENST00000504387 TSHZ3Q63HK5 1081 aa9.4□□□□□ -0.91
NEDD9-208ENST00000504387 LARP6Q9BRS8 491 aaKnown RBP9.4□□□□□ -0.91
NEDD9-208ENST00000504387 ADGBQ8N7X0 1667 aa9.4□□□□□ -0.91
NEDD9-208ENST00000504387 DDIT3P35638 169 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 WDR63Q8IWG1 891 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 GPT2Q8TD30 523 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 PPP1R9BQ96SB3 815 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 ZBTB40Q9NUA8 1239 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 TMEM63CQ9P1W3 806 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 NUTM2FA1L443 756 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 PIK3C2GO75747 1445 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 TTC12Q9H892 705 aaPredicted RBP9.39□□□□□ -0.91
NEDD9-208ENST00000504387 LMBRD1Q9NUN5 540 aa9.39□□□□□ -0.91
NEDD9-208ENST00000504387 ADCY10Q96PN6 1610 aa9.38□□□□□ -0.91
NEDD9-208ENST00000504387 TMPOP42166 694 aaKnown RBP9.38□□□□□ -0.91
NEDD9-208ENST00000504387 TSPYL6Q8N831 410 aa9.38□□□□□ -0.91
NEDD9-208ENST00000504387 HDAC1Q13547 482 aaPredicted RBP9.38□□□□□ -0.91
NEDD9-208ENST00000504387 SNX21Q969T3 373 aa9.38□□□□□ -0.91
NEDD9-208ENST00000504387 CDC42BPAQ5VT25 1732 aa9.37□□□□□ -0.91
NEDD9-208ENST00000504387 KIF16BQ96L93 1317 aa9.37□□□□□ -0.91
NEDD9-208ENST00000504387 CIZ1Q9ULV3 898 aaPredicted RBP9.37□□□□□ -0.91
NEDD9-208ENST00000504387 NOL7Q9UMY1 257 aaKnown RBP9.37□□□□□ -0.91
NEDD9-208ENST00000504387 ISY1Q9ULR0 285 aaKnown RBP9.37□□□□□ -0.91
NEDD9-208ENST00000504387 CHMP3Q9Y3E7 222 aa9.37□□□□□ -0.91
NEDD9-208ENST00000504387 SAMD9LQ8IVG5 1584 aa9.36□□□□□ -0.91
NEDD9-208ENST00000504387 ZKSCAN5Q9Y2L8 839 aa9.36□□□□□ -0.91
NEDD9-208ENST00000504387 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.36□□□□□ -0.91
NEDD9-208ENST00000504387 RAPGEF3O95398 923 aa9.36□□□□□ -0.91
NEDD9-208ENST00000504387 USP25Q9UHP3 1055 aa9.36□□□□□ -0.91
NEDD9-208ENST00000504387 TRIM35Q9UPQ4 493 aa9.36□□□□□ -0.91
NEDD9-208ENST00000504387 PRDM15P57071 1507 aaPredicted RBP9.36□□□□□ -0.91
NEDD9-208ENST00000504387 IPO8O15397 1037 aaKnown RBP9.35□□□□□ -0.91
NEDD9-208ENST00000504387 GSPT1P15170 499 aaKnown RBP9.35□□□□□ -0.91
NEDD9-208ENST00000504387 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.35□□□□□ -0.91
NEDD9-208ENST00000504387 SHANK2Q9UPX8 1470 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 NINLQ9Y2I6 1382 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 NEK4P51957 841 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 DCTN1Q14203 1278 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 SPC24Q8NBT2 197 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 CFAP65Q6ZU64 1925 aaKnown RBP9.35□□□□□ -0.91
NEDD9-208ENST00000504387 SCAF11Q99590 1463 aaKnown RBP9.35□□□□□ -0.91
NEDD9-208ENST00000504387 BMP2KLQ5H9B9 411 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 PPP4R3BQ5MIZ7 849 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 SIRT2Q8IXJ6 389 aa9.35□□□□□ -0.91
NEDD9-208ENST00000504387 CDC45O75419 566 aa9.34□□□□□ -0.91
NEDD9-208ENST00000504387 UPF3BQ9BZI7 483 aaKnown RBP9.34□□□□□ -0.91
NEDD9-208ENST00000504387 UGGT1Q9NYU2 1555 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 NOS1P29475 1434 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 GADD45BO75293 160 aaPredicted RBP9.33□□□□□ -0.92
NEDD9-208ENST00000504387 CCDC27Q2M243 656 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 KRT24Q2M2I5 525 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 SASS6Q6UVJ0 657 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 ZDHHC9Q9Y397 364 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 ZBTB22O15209 634 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 NUCB2P80303 420 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 AAMPQ13685 434 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 OSCARQ8IYS5 282 aa9.33□□□□□ -0.92
NEDD9-208ENST00000504387 FAM83GA6ND36 823 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 VGLL3A8MV65 326 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 ATP2B3Q16720 1220 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 EVC2Q86UK5 1308 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 TTC37Q6PGP7 1564 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 POLR3AO14802 1390 aaPredicted RBP9.32□□□□□ -0.92
NEDD9-208ENST00000504387 PRKAR2BP31323 418 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 ZNF445P59923 1031 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 KIAA2012Q0VF49 1180 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 CCDC39Q9UFE4 941 aa9.32□□□□□ -0.92
NEDD9-208ENST00000504387 ZBTB7BO15156 539 aaPredicted RBP9.31□□□□□ -0.92
NEDD9-208ENST00000504387 SLC4A10Q6U841 1118 aa9.31□□□□□ -0.92
NEDD9-208ENST00000504387 PRAM1Q96QH2 718 aa9.31□□□□□ -0.92
NEDD9-208ENST00000504387 ABCC2Q92887 1545 aa9.31□□□□□ -0.92
NEDD9-208ENST00000504387 LRSAM1Q6UWE0 723 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms