RNA–Protein interactions for RNA: ENST00000500869.6

LYSMD3-203, Transcript of LysM domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LYSMD3, Length 3,863 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD3-203ENST00000500869 USP54Q70EL1 1684 aa9.28□□□□□ -0.92
LYSMD3-203ENST00000500869 HDAC1Q13547 482 aaPredicted RBP9.28□□□□□ -0.92
LYSMD3-203ENST00000500869 MAP2P11137 1827 aaKnown RBP9.27□□□□□ -0.92
LYSMD3-203ENST00000500869 DLG5Q8TDM6 1919 aa9.27□□□□□ -0.92
LYSMD3-203ENST00000500869 PTCH1Q13635 1447 aa9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 AATKQ6ZMQ8 1374 aa9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 MVPQ14764 893 aaKnown RBP9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 IDI1Q13907 227 aa9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 NFKBIBQ15653 356 aa9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 ZNF428Q96B54 188 aa9.27□□□□□ -0.93
LYSMD3-203ENST00000500869 TMEM132EQ6IEE7 984 aa9.26□□□□□ -0.93
LYSMD3-203ENST00000500869 TRIM35Q9UPQ4 493 aa9.26□□□□□ -0.93
LYSMD3-203ENST00000500869 RLBP1P12271 317 aa9.26□□□□□ -0.93
LYSMD3-203ENST00000500869 PANK1Q8TE04 598 aa9.26□□□□□ -0.93
LYSMD3-203ENST00000500869 N4BP2Q86UW6 1770 aaPredicted RBP9.26□□□□□ -0.93
LYSMD3-203ENST00000500869 EDC4Q6P2E9 1401 aaKnown RBP9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 PCDHB15Q9Y5E8 787 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 NCOA3Q9Y6Q9 1424 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 ALDH1L2Q3SY69 923 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 SIRT1Q96EB6 747 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 TBC1D32Q96NH3 1257 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 PNNQ9H307 717 aaKnown RBP9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 GGT6Q6P531 493 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 COG6Q9Y2V7 657 aa9.25□□□□□ -0.93
LYSMD3-203ENST00000500869 UBR1Q8IWV7 1749 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 RWDD1Q9H446 243 aaPredicted RBP9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 TERF2IPQ9NYB0 399 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 TMPOP42166 694 aaKnown RBP9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 ZKSCAN2Q63HK3 967 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 KIF24Q5T7B8 1368 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 FYB1O15117 783 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 ANTXR1Q9H6X2 564 aa9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 LAS1LQ9Y4W2 734 aaKnown RBP9.24□□□□□ -0.93
LYSMD3-203ENST00000500869 GSE1Q14687 1217 aa9.23□□□□□ -0.93
LYSMD3-203ENST00000500869 SMC5Q8IY18 1101 aa9.23□□□□□ -0.93
LYSMD3-203ENST00000500869 KIF16BQ96L93 1317 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 FMN2Q9NZ56 1722 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 RIMS2Q9UQ26 1411 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 DZIP1LQ8IYY4 767 aaKnown RBP9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 PDZRN3Q9UPQ7 1066 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 CABP2Q9NPB3 220 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 DDX19BQ9UMR2 479 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 KIF13AQ9H1H9 1805 aa9.22□□□□□ -0.93
LYSMD3-203ENST00000500869 LRRC37A3O60309 1634 aa9.21□□□□□ -0.93
LYSMD3-203ENST00000500869 FCHSD2O94868 740 aa9.21□□□□□ -0.93
LYSMD3-203ENST00000500869 RAPGEF3O95398 923 aa9.21□□□□□ -0.94
LYSMD3-203ENST00000500869 RGS3P49796 1198 aa9.21□□□□□ -0.94
LYSMD3-203ENST00000500869 CHGAP10645 457 aaKnown RBP9.21□□□□□ -0.94
LYSMD3-203ENST00000500869 BECN1Q14457 450 aa9.21□□□□□ -0.94
LYSMD3-203ENST00000500869 ARHGAP45Q92619 1136 aa9.21□□□□□ -0.94
LYSMD3-203ENST00000500869 RSPH6AQ9H0K4 717 aa9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 CANXP27824 592 aaKnown RBP9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 ATF7IPQ6VMQ6 1270 aa9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 SEC24BO95487 1268 aa9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 U2AF1L5P0DN76 240 aaPredicted RBP9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 U2AF1Q01081 240 aaKnown RBP eCLIP9.2□□□□□ -0.942e-12■■■■■ 59
LYSMD3-203ENST00000500869 ZBTB40Q9NUA8 1239 aa9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 TNNQ9UQP3 1299 aa9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 RRP7AQ9Y3A4 280 aaKnown RBP9.2□□□□□ -0.94
LYSMD3-203ENST00000500869 TRIM27P14373 513 aa9.19□□□□□ -0.94
LYSMD3-203ENST00000500869 TUBGCP6Q96RT7 1819 aa9.19□□□□□ -0.94
LYSMD3-203ENST00000500869 ZNF853P0CG23 659 aa9.19□□□□□ -0.94
LYSMD3-203ENST00000500869 HDGFL2Q7Z4V5 671 aaPredicted RBP9.19□□□□□ -0.94
LYSMD3-203ENST00000500869 DIAPH1O60610 1272 aaKnown RBP9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 PRAM1Q96QH2 718 aa9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 PEAK1Q9H792 1746 aa9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 SSH1Q8WYL5 1049 aa9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 EXOSC9Q06265 439 aaKnown RBP9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 DAXXQ9UER7 740 aaPredicted RBP9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.18□□□□□ -0.94
LYSMD3-203ENST00000500869 DIP2AQ14689 1571 aa9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 ABCC4O15439 1325 aa9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 DDIT3P35638 169 aa9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 CDK19Q9BWU1 502 aa9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 IPO8O15397 1037 aaKnown RBP9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 CALD1Q05682 793 aaKnown RBP9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 FRAT1Q92837 279 aaPredicted RBP9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 MARF1Q9Y4F3 1742 aaKnown RBP9.17□□□□□ -0.94
LYSMD3-203ENST00000500869 OVOS2A0A0J9YW53 1432 aa9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 OVOS2Q6IE36 1432 aa9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 RBM25P49756 843 aaKnown RBP9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 NUCB1Q02818 461 aa9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 CHMP4BQ9H444 224 aaKnown RBP9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 IFT57Q9NWB7 429 aa9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 UPF2Q9HAU5 1272 aaKnown RBP9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 POLKQ9UBT6 870 aa9.16□□□□□ -0.94
LYSMD3-203ENST00000500869 SRPK2P78362 688 aaKnown RBP9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 NFE2L2Q16236 605 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 SNX21Q969T3 373 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 GGNBP2Q9H3C7 697 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 SMC4Q9NTJ3 1288 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 IL13P35225 146 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 TNNT2P45379 298 aaPredicted RBP9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 SSH2Q76I76 1423 aa9.15□□□□□ -0.94
LYSMD3-203ENST00000500869 SLC4A3P48751 1232 aa9.15□□□□□ -0.95
LYSMD3-203ENST00000500869 TBC1D2Q9BYX2 928 aa9.15□□□□□ -0.95
LYSMD3-203ENST00000500869 FRAT2O75474 233 aaPredicted RBP9.14□□□□□ -0.95
LYSMD3-203ENST00000500869 FTSJ3Q8IY81 847 aaKnown RBP9.14□□□□□ -0.95
LYSMD3-203ENST00000500869 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.14□□□□□ -0.95
LYSMD3-203ENST00000500869 TSR2Q969E8 191 aaKnown RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 110.2 ms