RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 PXDNQ92626 1479 aa13.8□□□□□ -0.2
HDAC3-214ENST00000495485 HNRNPUQ00839 825 aaKnown RBP eCLIP13.79□□□□□ -0.2
HDAC3-214ENST00000495485 CNGB1Q14028 1251 aaPredicted RBP13.79□□□□□ -0.2
HDAC3-214ENST00000495485 NGDNQ8NEJ9 315 aaKnown RBP13.79□□□□□ -0.2
HDAC3-214ENST00000495485 ARHGEF10O15013 1369 aa13.79□□□□□ -0.2
HDAC3-214ENST00000495485 NUTM2FA1L443 756 aa13.78□□□□□ -0.2
HDAC3-214ENST00000495485 FOXO3O43524 673 aa13.78□□□□□ -0.2
HDAC3-214ENST00000495485 CABP2Q9NPB3 220 aa13.78□□□□□ -0.2
HDAC3-214ENST00000495485 AKAP12Q02952 1782 aa13.77□□□□□ -0.21
HDAC3-214ENST00000495485 CC2D1BQ5T0F9 858 aaKnown RBP13.77□□□□□ -0.21
HDAC3-214ENST00000495485 KRT28Q7Z3Y7 464 aa13.77□□□□□ -0.21
HDAC3-214ENST00000495485 COL22A1Q8NFW1 1626 aaPredicted RBP13.77□□□□□ -0.21
HDAC3-214ENST00000495485 TNS3Q68CZ2 1445 aa13.76□□□□□ -0.21
HDAC3-214ENST00000495485 TERF2IPQ9NYB0 399 aa13.76□□□□□ -0.21
HDAC3-214ENST00000495485 TRPM3Q9HCF6 1732 aaPredicted RBP13.76□□□□□ -0.21
HDAC3-214ENST00000495485 ACEP12821 1306 aa13.75□□□□□ -0.21
HDAC3-214ENST00000495485 SPATA31A3Q5VYP0 1347 aa13.75□□□□□ -0.21
HDAC3-214ENST00000495485 AMER1Q5JTC6 1135 aaPredicted RBP13.74□□□□□ -0.21
HDAC3-214ENST00000495485 HDGFL2Q7Z4V5 671 aaPredicted RBP13.74□□□□□ -0.21
HDAC3-214ENST00000495485 PMFBP1Q8TBY8 1022 aa13.74□□□□□ -0.21
HDAC3-214ENST00000495485 CABP1Q9NZU7 370 aa13.74□□□□□ -0.21
HDAC3-214ENST00000495485 CPSF1Q10570 1443 aaKnown RBP13.73□□□□□ -0.21
HDAC3-214ENST00000495485 MON2Q7Z3U7 1717 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 NSD2O96028 1365 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 INSRP06213 1382 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 PNPLA6Q8IY17 1366 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 ANKRD36BQ8N2N9 1353 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 ALS2Q96Q42 1657 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 CGNL1Q0VF96 1302 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 TTC21AQ8NDW8 1320 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 PNISRQ8TF01 805 aaKnown RBP13.73□□□□□ -0.21
HDAC3-214ENST00000495485 USP6P35125 1406 aa13.73□□□□□ -0.21
HDAC3-214ENST00000495485 CCDC184Q52MB2 194 aa13.72□□□□□ -0.21
HDAC3-214ENST00000495485 GTF3C3Q9Y5Q9 886 aa13.72□□□□□ -0.21
HDAC3-214ENST00000495485 MED1Q15648 1581 aaPredicted RBP13.71□□□□□ -0.21
HDAC3-214ENST00000495485 ZBED9Q6R2W3 1325 aa13.71□□□□□ -0.21
HDAC3-214ENST00000495485 SLC12A5Q9H2X9 1139 aa13.71□□□□□ -0.21
HDAC3-214ENST00000495485 EDC4Q6P2E9 1401 aaKnown RBP13.7□□□□□ -0.22
HDAC3-214ENST00000495485 PPP2R1AP30153 589 aa13.69□□□□□ -0.22
HDAC3-214ENST00000495485 WDR43Q15061 677 aaKnown RBP eCLIP13.69□□□□□ -0.22
HDAC3-214ENST00000495485 DDX17Q92841 729 aaKnown RBP13.69□□□□□ -0.22
HDAC3-214ENST00000495485 SSH2Q76I76 1423 aa13.69□□□□□ -0.22
HDAC3-214ENST00000495485 NSD3Q9BZ95 1437 aa13.69□□□□□ -0.22
HDAC3-214ENST00000495485 MARF1Q9Y4F3 1742 aaKnown RBP13.69□□□□□ -0.22
HDAC3-214ENST00000495485 NRKQ7Z2Y5 1582 aa13.68□□□□□ -0.22
HDAC3-214ENST00000495485 MORC1Q86VD1 984 aa13.68□□□□□ -0.22
HDAC3-214ENST00000495485 USP54Q70EL1 1684 aa13.68□□□□□ -0.22
HDAC3-214ENST00000495485 NEFLP07196 543 aa13.67□□□□□ -0.22
HDAC3-214ENST00000495485 CARD14Q9BXL6 1004 aa13.67□□□□□ -0.22
HDAC3-214ENST00000495485 CD163L1Q9NR16 1453 aa13.67□□□□□ -0.22
HDAC3-214ENST00000495485 PAK3O75914 559 aaPredicted RBP13.66□□□□□ -0.22
HDAC3-214ENST00000495485 ABTB2Q8N961 1025 aa13.66□□□□□ -0.22
HDAC3-214ENST00000495485 CFAP53Q96M91 514 aa13.66□□□□□ -0.22
HDAC3-214ENST00000495485 A0A1W2PP64 1363 aa13.66□□□□□ -0.22
HDAC3-214ENST00000495485 ABCA3Q99758 1704 aa13.65□□□□□ -0.22
HDAC3-214ENST00000495485 XPCQ01831 940 aaPredicted RBP13.65□□□□□ -0.22
HDAC3-214ENST00000495485 TTC21BQ7Z4L5 1316 aa13.64□□□□□ -0.23
HDAC3-214ENST00000495485 USP31Q70CQ4 1352 aa13.64□□□□□ -0.23
HDAC3-214ENST00000495485 CRYBG1Q9Y4K1 1723 aa13.64□□□□□ -0.23
HDAC3-214ENST00000495485 USP19O94966 1318 aa13.64□□□□□ -0.23
HDAC3-214ENST00000495485 HAP1P54257 671 aaPredicted RBP13.63□□□□□ -0.23
HDAC3-214ENST00000495485 PDE3BQ13370 1112 aa13.63□□□□□ -0.23
HDAC3-214ENST00000495485 LMOD2Q6P5Q4 547 aa13.63□□□□□ -0.23
HDAC3-214ENST00000495485 NGEFQ8N5V2 710 aa13.63□□□□□ -0.23
HDAC3-214ENST00000495485 KCNH5Q8NCM2 988 aa13.63□□□□□ -0.23
HDAC3-214ENST00000495485 PIK3C2AO00443 1686 aa13.63□□□□□ -0.23
HDAC3-214ENST00000495485 PHRF1Q9P1Y6 1649 aaKnown RBP13.62□□□□□ -0.23
HDAC3-214ENST00000495485 MEX3CQ5U5Q3 659 aaKnown RBP13.62□□□□□ -0.23
HDAC3-214ENST00000495485 NWD2Q9ULI1 1742 aa13.61□□□□□ -0.23
HDAC3-214ENST00000495485 SLIT3O75094 1523 aa13.61□□□□□ -0.23
HDAC3-214ENST00000495485 ABCC6O95255 1503 aa13.61□□□□□ -0.23
HDAC3-214ENST00000495485 NLRP6P59044 892 aa13.61□□□□□ -0.23
HDAC3-214ENST00000495485 ZNF772Q68DY9 489 aaPredicted RBP13.61□□□□□ -0.23
HDAC3-214ENST00000495485 KIF20BQ96Q89 1820 aa13.61□□□□□ -0.23
HDAC3-214ENST00000495485 CPDO75976 1380 aa13.6□□□□□ -0.23
HDAC3-214ENST00000495485 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.6□□□□□ -0.23
HDAC3-214ENST00000495485 ANKRD26Q9UPS8 1709 aa13.6□□□□□ -0.23
HDAC3-214ENST00000495485 COL14A1Q05707 1796 aaKnown RBP13.6□□□□□ -0.23
HDAC3-214ENST00000495485 LRP6O75581 1613 aa13.6□□□□□ -0.23
HDAC3-214ENST00000495485 PHF23Q9BUL5 403 aaPredicted RBP13.59□□□□□ -0.23
HDAC3-214ENST00000495485 NUTM2BA6NNL0 878 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-214ENST00000495485 NUTM2EB1AL46 878 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-214ENST00000495485 NUTM2AQ8IVF1 878 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-214ENST00000495485 FNBP4Q8N3X1 1017 aaPredicted RBP13.58□□□□□ -0.24
HDAC3-214ENST00000495485 OVOS2A0A0J9YW53 1432 aa13.57□□□□□ -0.24
HDAC3-214ENST00000495485 OVOS2Q6IE36 1432 aa13.57□□□□□ -0.24
HDAC3-214ENST00000495485 GCP02774 474 aa13.57□□□□□ -0.24
HDAC3-214ENST00000495485 COG3Q96JB2 828 aa13.57□□□□□ -0.24
HDAC3-214ENST00000495485 NUDCQ9Y266 331 aa13.57□□□□□ -0.24
HDAC3-214ENST00000495485 BLMP54132 1417 aaPredicted RBP13.56□□□□□ -0.24
HDAC3-214ENST00000495485 NGLY1Q96IV0 654 aa13.56□□□□□ -0.24
HDAC3-214ENST00000495485 PNNQ9H307 717 aaKnown RBP13.56□□□□□ -0.24
HDAC3-214ENST00000495485 SMG6Q86US8 1419 aaKnown RBP13.56□□□□□ -0.24
HDAC3-214ENST00000495485 SLIT2O94813 1529 aa13.55□□□□□ -0.24
HDAC3-214ENST00000495485 FYB1O15117 783 aa13.55□□□□□ -0.24
HDAC3-214ENST00000495485 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.55□□□□□ -0.24
HDAC3-214ENST00000495485 PELP1Q8IZL8 1130 aaKnown RBP13.55□□□□□ -0.24
HDAC3-214ENST00000495485 ADAMTS8Q9UP79 889 aa13.55□□□□□ -0.24
HDAC3-214ENST00000495485 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
HDAC3-214ENST00000495485 PLCH1Q4KWH8 1693 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 147.7 ms