RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 FAM83GA6ND36 823 aa23.55■■□□□ 1.36
PDLIM2-217ENST00000491330 MYT1Q01538 1121 aa23.55■■□□□ 1.36
PDLIM2-217ENST00000491330 ATP7BP35670 1465 aa23.55■■□□□ 1.36
PDLIM2-217ENST00000491330 ABTB2Q8N961 1025 aa23.54■■□□□ 1.36
PDLIM2-217ENST00000491330 CABP2Q9NPB3 220 aa23.54■■□□□ 1.36
PDLIM2-217ENST00000491330 BTG4Q9NY30 223 aa23.53■■□□□ 1.36
PDLIM2-217ENST00000491330 BRD4O60885 1362 aaPredicted RBP23.52■■□□□ 1.36
PDLIM2-217ENST00000491330 NLRP13Q86W25 1043 aa23.52■■□□□ 1.36
PDLIM2-217ENST00000491330 ITSN1Q15811 1721 aa23.52■■□□□ 1.36
PDLIM2-217ENST00000491330 POLR3AO14802 1390 aaPredicted RBP23.52■■□□□ 1.36
PDLIM2-217ENST00000491330 SF3B2Q13435 895 aaKnown RBP23.51■■□□□ 1.35
PDLIM2-217ENST00000491330 MARF1Q9Y4F3 1742 aaKnown RBP23.5■■□□□ 1.35
PDLIM2-217ENST00000491330 CARD11Q9BXL7 1154 aa23.5■■□□□ 1.35
PDLIM2-217ENST00000491330 PPIP5K1Q6PFW1 1433 aa23.5■■□□□ 1.35
PDLIM2-217ENST00000491330 SEPT12Q8IYM1 358 aa23.49■■□□□ 1.35
PDLIM2-217ENST00000491330 RALGAPBQ86X10 1494 aa23.49■■□□□ 1.35
PDLIM2-217ENST00000491330 EVA1CP58658 441 aa23.48■■□□□ 1.35
PDLIM2-217ENST00000491330 ZNF692Q9BU19 519 aaPredicted RBP23.48■■□□□ 1.35
PDLIM2-217ENST00000491330 CABP1Q9NZU7 370 aa23.48■■□□□ 1.35
PDLIM2-217ENST00000491330 SLC24A1O60721 1099 aa23.47■■□□□ 1.35
PDLIM2-217ENST00000491330 NUTM2GQ5VZR2 741 aa23.47■■□□□ 1.35
PDLIM2-217ENST00000491330 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.45■■□□□ 1.34
PDLIM2-217ENST00000491330 ONECUT3O60422 494 aaPredicted RBP23.44■■□□□ 1.34
PDLIM2-217ENST00000491330 ZC3H6P61129 1189 aaKnown RBP23.44■■□□□ 1.34
PDLIM2-217ENST00000491330 KRT27Q7Z3Y8 459 aa23.43■■□□□ 1.34
PDLIM2-217ENST00000491330 TRPM3Q9HCF6 1732 aaPredicted RBP23.42■■□□□ 1.34
PDLIM2-217ENST00000491330 NLRP6P59044 892 aa23.42■■□□□ 1.34
PDLIM2-217ENST00000491330 KIAA0232Q92628 1395 aa23.41■■□□□ 1.34
PDLIM2-217ENST00000491330 STRN4Q9NRL3 753 aa23.41■■□□□ 1.34
PDLIM2-217ENST00000491330 NWD2Q9ULI1 1742 aa23.41■■□□□ 1.34
PDLIM2-217ENST00000491330 FAM98CQ17RN3 349 aaKnown RBP23.4■■□□□ 1.34
PDLIM2-217ENST00000491330 ALS2Q96Q42 1657 aa23.4■■□□□ 1.34
PDLIM2-217ENST00000491330 CLSPNQ9HAW4 1339 aa23.39■■□□□ 1.34
PDLIM2-217ENST00000491330 GCP02774 474 aa23.39■■□□□ 1.33
PDLIM2-217ENST00000491330 CHRNA2Q15822 529 aa23.39■■□□□ 1.33
PDLIM2-217ENST00000491330 COL14A1Q05707 1796 aaKnown RBP23.39■■□□□ 1.33
PDLIM2-217ENST00000491330 TRPM1Q7Z4N2 1603 aa23.38■■□□□ 1.33
PDLIM2-217ENST00000491330 SPATA31A5Q5VU36 1347 aa23.37■■□□□ 1.33
PDLIM2-217ENST00000491330 SPATA31A7Q8IWB4 1347 aa23.37■■□□□ 1.33
PDLIM2-217ENST00000491330 ZRANB1Q9UGI0 708 aa23.37■■□□□ 1.33
PDLIM2-217ENST00000491330 QRICH2Q9H0J4 1663 aa23.37■■□□□ 1.33
PDLIM2-217ENST00000491330 KCNH5Q8NCM2 988 aa23.36■■□□□ 1.33
PDLIM2-217ENST00000491330 USP6P35125 1406 aa23.35■■□□□ 1.33
PDLIM2-217ENST00000491330 ZBTB7CA1YPR0 619 aa23.35■■□□□ 1.33
PDLIM2-217ENST00000491330 GLI3P10071 1580 aa23.35■■□□□ 1.33
PDLIM2-217ENST00000491330 PLCH1Q4KWH8 1693 aa23.35■■□□□ 1.33
PDLIM2-217ENST00000491330 BLMP54132 1417 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 HDGFL2Q7Z4V5 671 aaPredicted RBP23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 TMC1Q8TDI8 760 aa23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 CPDO75976 1380 aa23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 SBNO2Q9Y2G9 1366 aa23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 TOPAZ1Q8N9V7 1692 aa23.34■■□□□ 1.33
PDLIM2-217ENST00000491330 USP19O94966 1318 aa23.33■■□□□ 1.33
PDLIM2-217ENST00000491330 TTC21AQ8NDW8 1320 aa23.33■■□□□ 1.33
PDLIM2-217ENST00000491330 ABCA3Q99758 1704 aa23.33■■□□□ 1.33
PDLIM2-217ENST00000491330 TERF2IPQ9NYB0 399 aa23.31■■□□□ 1.32
PDLIM2-217ENST00000491330 USP35Q9P2H5 1018 aa23.31■■□□□ 1.32
PDLIM2-217ENST00000491330 SPATA31A1Q5TZJ5 1347 aa23.31■■□□□ 1.32
PDLIM2-217ENST00000491330 KTN1Q86UP2 1357 aaKnown RBP23.3■■□□□ 1.32
PDLIM2-217ENST00000491330 PDE3BQ13370 1112 aa23.3■■□□□ 1.32
PDLIM2-217ENST00000491330 PUS7Q96PZ0 661 aaKnown RBP23.3■■□□□ 1.32
PDLIM2-217ENST00000491330 BAG6P46379 1132 aa23.29■■□□□ 1.32
PDLIM2-217ENST00000491330 TIMELESSQ9UNS1 1208 aa23.29■■□□□ 1.32
PDLIM2-217ENST00000491330 THRAP3Q9Y2W1 955 aaKnown RBP23.29■■□□□ 1.32
PDLIM2-217ENST00000491330 TTC21BQ7Z4L5 1316 aa23.29■■□□□ 1.32
PDLIM2-217ENST00000491330 TCP11L2Q8N4U5 519 aa23.28■■□□□ 1.32
PDLIM2-217ENST00000491330 BARGINQ6ZT62 677 aa23.26■■□□□ 1.31
PDLIM2-217ENST00000491330 C11orf95C9JLR9 678 aaPredicted RBP23.25■■□□□ 1.31
PDLIM2-217ENST00000491330 FAM196AQ6ZSG2 479 aa23.25■■□□□ 1.31
PDLIM2-217ENST00000491330 PCGF6Q9BYE7 350 aa23.25■■□□□ 1.31
PDLIM2-217ENST00000491330 SSH2Q76I76 1423 aa23.25■■□□□ 1.31
PDLIM2-217ENST00000491330 AATKQ6ZMQ8 1374 aa23.24■■□□□ 1.31
PDLIM2-217ENST00000491330 CDCA8Q53HL2 280 aa23.23■■□□□ 1.31
PDLIM2-217ENST00000491330 LARP1Q6PKG0 1096 aaKnown RBP23.23■■□□□ 1.31
PDLIM2-217ENST00000491330 TOM1L2Q6ZVM7 507 aa23.23■■□□□ 1.31
PDLIM2-217ENST00000491330 PHRF1Q9P1Y6 1649 aaKnown RBP23.22■■□□□ 1.31
PDLIM2-217ENST00000491330 CSB-PGBD3P0DP91 1061 aa23.22■■□□□ 1.31
PDLIM2-217ENST00000491330 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.22■■□□□ 1.31
PDLIM2-217ENST00000491330 ST20-MTHFSA0A0A6YYL1 179 aa23.21■■□□□ 1.31
PDLIM2-217ENST00000491330 SOX12O15370 315 aa23.21■■□□□ 1.31
PDLIM2-217ENST00000491330 NRAPQ86VF7 1730 aa23.2■■□□□ 1.3
PDLIM2-217ENST00000491330 CPSF1Q10570 1443 aaKnown RBP23.2■■□□□ 1.3
PDLIM2-217ENST00000491330 NINLQ9Y2I6 1382 aa23.2■■□□□ 1.3
PDLIM2-217ENST00000491330 TMF1P82094 1093 aa23.2■■□□□ 1.3
PDLIM2-217ENST00000491330 SLC12A5Q9H2X9 1139 aa23.19■■□□□ 1.3
PDLIM2-217ENST00000491330 CRYBG1Q9Y4K1 1723 aa23.19■■□□□ 1.3
PDLIM2-217ENST00000491330 NRKQ7Z2Y5 1582 aa23.18■■□□□ 1.3
PDLIM2-217ENST00000491330 DEFB132Q7Z7B7 95 aa23.18■■□□□ 1.3
PDLIM2-217ENST00000491330 CDCA7Q9BWT1 371 aaPredicted RBP23.18■■□□□ 1.3
PDLIM2-217ENST00000491330 CRB1P82279 1406 aa23.17■■□□□ 1.3
PDLIM2-217ENST00000491330 ARHGEF25Q86VW2 580 aa23.16■■□□□ 1.3
PDLIM2-217ENST00000491330 CAMTA1Q9Y6Y1 1673 aa23.16■■□□□ 1.3
PDLIM2-217ENST00000491330 FAM182BQ5T319 152 aa23.14■■□□□ 1.29
PDLIM2-217ENST00000491330 SLIT3O75094 1523 aa23.13■■□□□ 1.29
PDLIM2-217ENST00000491330 WDR17Q8IZU2 1322 aa23.13■■□□□ 1.29
PDLIM2-217ENST00000491330 COL5A2P05997 1499 aaPredicted RBP23.13■■□□□ 1.29
PDLIM2-217ENST00000491330 DDB1Q16531 1140 aa23.12■■□□□ 1.29
PDLIM2-217ENST00000491330 EDC4Q6P2E9 1401 aaKnown RBP23.12■■□□□ 1.29
PDLIM2-217ENST00000491330 USP31Q70CQ4 1352 aa23.12■■□□□ 1.29
PDLIM2-217ENST00000491330 BRWD3Q6RI45 1802 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms