RNA–Protein interactions for RNA: ENST00000491028.1

MCF2L-230, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 4

Gene MCF2L, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-230ENST00000491028 TTC21AQ8NDW8 1320 aa25.52■■□□□ 1.68
MCF2L-230ENST00000491028 NPC1L1Q9UHC9 1359 aa25.52■■□□□ 1.68
MCF2L-230ENST00000491028 ANKRD26Q9UPS8 1709 aa25.51■■□□□ 1.68
MCF2L-230ENST00000491028 CGNL1Q0VF96 1302 aa25.51■■□□□ 1.67
MCF2L-230ENST00000491028 NSD2O96028 1365 aa25.51■■□□□ 1.67
MCF2L-230ENST00000491028 TTC21BQ7Z4L5 1316 aa25.5■■□□□ 1.67
MCF2L-230ENST00000491028 KRT28Q7Z3Y7 464 aa25.49■■□□□ 1.67
MCF2L-230ENST00000491028 USP54Q70EL1 1684 aa25.48■■□□□ 1.67
MCF2L-230ENST00000491028 SBNO1A3KN83 1393 aa25.48■■□□□ 1.67
MCF2L-230ENST00000491028 PIK3C2AO00443 1686 aa25.48■■□□□ 1.67
MCF2L-230ENST00000491028 ALS2Q96Q42 1657 aa25.48■■□□□ 1.67
MCF2L-230ENST00000491028 SOS2Q07890 1332 aaPredicted RBP25.47■■□□□ 1.67
MCF2L-230ENST00000491028 AMER1Q5JTC6 1135 aaPredicted RBP25.47■■□□□ 1.67
MCF2L-230ENST00000491028 DIEXFQ68CQ4 756 aaKnown RBP25.47■■□□□ 1.67
MCF2L-230ENST00000491028 PIP4K2BP78356 416 aa25.46■■□□□ 1.67
MCF2L-230ENST00000491028 PHLPP1O60346 1717 aa25.46■■□□□ 1.67
MCF2L-230ENST00000491028 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.45■■□□□ 1.66
MCF2L-230ENST00000491028 DDX17Q92841 729 aaKnown RBP25.45■■□□□ 1.66
MCF2L-230ENST00000491028 TNS3Q68CZ2 1445 aa25.45■■□□□ 1.66
MCF2L-230ENST00000491028 SCAF1Q9H7N4 1312 aaKnown RBP25.43■■□□□ 1.66
MCF2L-230ENST00000491028 XPCQ01831 940 aaPredicted RBP25.43■■□□□ 1.66
MCF2L-230ENST00000491028 COL16A1Q07092 1604 aaPredicted RBP25.42■■□□□ 1.66
MCF2L-230ENST00000491028 FYB1O15117 783 aa25.42■■□□□ 1.66
MCF2L-230ENST00000491028 PAK3O75914 559 aaPredicted RBP25.42■■□□□ 1.66
MCF2L-230ENST00000491028 USP31Q70CQ4 1352 aa25.42■■□□□ 1.66
MCF2L-230ENST00000491028 MARF1Q9Y4F3 1742 aaKnown RBP25.4■■□□□ 1.66
MCF2L-230ENST00000491028 OVOS2A0A0J9YW53 1432 aa25.4■■□□□ 1.66
MCF2L-230ENST00000491028 OVOS2Q6IE36 1432 aa25.4■■□□□ 1.66
MCF2L-230ENST00000491028 NME9Q86XW9 330 aa25.4■■□□□ 1.66
MCF2L-230ENST00000491028 ARHGEF10O15013 1369 aa25.4■■□□□ 1.66
MCF2L-230ENST00000491028 SPATA31A3Q5VYP0 1347 aa25.39■■□□□ 1.66
MCF2L-230ENST00000491028 ABTB2Q8N961 1025 aa25.38■■□□□ 1.65
MCF2L-230ENST00000491028 GGNBP2Q9H3C7 697 aa25.38■■□□□ 1.65
MCF2L-230ENST00000491028 MED1Q15648 1581 aaPredicted RBP25.38■■□□□ 1.65
MCF2L-230ENST00000491028 PARD3Q8TEW0 1356 aa25.37■■□□□ 1.65
MCF2L-230ENST00000491028 ANP32CO43423 234 aa25.37■■□□□ 1.65
MCF2L-230ENST00000491028 CC2D1BQ5T0F9 858 aaKnown RBP25.37■■□□□ 1.65
MCF2L-230ENST00000491028 COG3Q96JB2 828 aa25.36■■□□□ 1.65
MCF2L-230ENST00000491028 NLRP6P59044 892 aa25.34■■□□□ 1.65
MCF2L-230ENST00000491028 RALBP1Q15311 655 aa25.34■■□□□ 1.65
MCF2L-230ENST00000491028 NLRP13Q86W25 1043 aa25.34■■□□□ 1.65
MCF2L-230ENST00000491028 LRRC59Q96AG4 307 aaKnown RBP25.34■■□□□ 1.65
MCF2L-230ENST00000491028 CRYBG1Q9Y4K1 1723 aa25.34■■□□□ 1.65
MCF2L-230ENST00000491028 MORC1Q86VD1 984 aa25.33■■□□□ 1.65
MCF2L-230ENST00000491028 PRKRIP1Q9H875 184 aaPredicted RBP25.33■■□□□ 1.65
MCF2L-230ENST00000491028 COL22A1Q8NFW1 1626 aaPredicted RBP25.33■■□□□ 1.65
MCF2L-230ENST00000491028 SLIT3O75094 1523 aa25.32■■□□□ 1.64
MCF2L-230ENST00000491028 PHRF1Q9P1Y6 1649 aaKnown RBP25.32■■□□□ 1.64
MCF2L-230ENST00000491028 LMOD2Q6P5Q4 547 aa25.31■■□□□ 1.64
MCF2L-230ENST00000491028 ZRANB1Q9UGI0 708 aa25.31■■□□□ 1.64
MCF2L-230ENST00000491028 USP19O94966 1318 aa25.31■■□□□ 1.64
MCF2L-230ENST00000491028 CNGB1Q14028 1251 aaPredicted RBP25.3■■□□□ 1.64
MCF2L-230ENST00000491028 SHPRHQ149N8 1683 aa25.29■■□□□ 1.64
MCF2L-230ENST00000491028 ABCA3Q99758 1704 aa25.29■■□□□ 1.64
MCF2L-230ENST00000491028 NUTM2GQ5VZR2 741 aa25.28■■□□□ 1.64
MCF2L-230ENST00000491028 AATKQ6ZMQ8 1374 aa25.27■■□□□ 1.64
MCF2L-230ENST00000491028 PNPLA6Q8IY17 1366 aa25.27■■□□□ 1.64
MCF2L-230ENST00000491028 NFAT5O94916 1531 aa25.26■■□□□ 1.63
MCF2L-230ENST00000491028 ILDR2Q71H61 639 aa25.25■■□□□ 1.63
MCF2L-230ENST00000491028 KCNH5Q8NCM2 988 aa25.25■■□□□ 1.63
MCF2L-230ENST00000491028 MYBBP1AQ9BQG0 1328 aaKnown RBP25.25■■□□□ 1.63
MCF2L-230ENST00000491028 MAP2P11137 1827 aaKnown RBP25.23■■□□□ 1.63
MCF2L-230ENST00000491028 SMG6Q86US8 1419 aaKnown RBP25.21■■□□□ 1.63
MCF2L-230ENST00000491028 JCADQ9P266 1359 aa25.21■■□□□ 1.63
MCF2L-230ENST00000491028 SOCS7O14512 581 aa25.2■■□□□ 1.62
MCF2L-230ENST00000491028 GCP02774 474 aa25.2■■□□□ 1.62
MCF2L-230ENST00000491028 PPP2R1AP30153 589 aa25.2■■□□□ 1.62
MCF2L-230ENST00000491028 TNNT2P45379 298 aaPredicted RBP25.2■■□□□ 1.62
MCF2L-230ENST00000491028 LTN1O94822 1766 aa25.2■■□□□ 1.62
MCF2L-230ENST00000491028 HSPA1LP34931 641 aa25.19■■□□□ 1.62
MCF2L-230ENST00000491028 KIF24Q5T7B8 1368 aa25.17■■□□□ 1.62
MCF2L-230ENST00000491028 ABCC6O95255 1503 aa25.16■■□□□ 1.62
MCF2L-230ENST00000491028 SOX12O15370 315 aa25.15■■□□□ 1.62
MCF2L-230ENST00000491028 MIER1Q8N108 512 aa25.15■■□□□ 1.62
MCF2L-230ENST00000491028 CABLES1Q8TDN4 633 aa25.15■■□□□ 1.62
MCF2L-230ENST00000491028 CPDO75976 1380 aa25.15■■□□□ 1.62
MCF2L-230ENST00000491028 CDK12Q9NYV4 1490 aaPredicted RBP25.15■■□□□ 1.62
MCF2L-230ENST00000491028 HAP1P54257 671 aaPredicted RBP25.14■■□□□ 1.62
MCF2L-230ENST00000491028 POLKQ9UBT6 870 aa25.14■■□□□ 1.62
MCF2L-230ENST00000491028 RTL1A6NKG5 1358 aa25.14■■□□□ 1.61
MCF2L-230ENST00000491028 PEAK1Q9H792 1746 aa25.14■■□□□ 1.61
MCF2L-230ENST00000491028 PLEKHG5O94827 1062 aa25.13■■□□□ 1.61
MCF2L-230ENST00000491028 MAP3K19Q56UN5 1328 aa25.12■■□□□ 1.61
MCF2L-230ENST00000491028 SPATA31A6Q5VVP1 1343 aa25.12■■□□□ 1.61
MCF2L-230ENST00000491028 CCER2I3L3R5 266 aa25.11■■□□□ 1.61
MCF2L-230ENST00000491028 FBLN1P23142 703 aa25.11■■□□□ 1.61
MCF2L-230ENST00000491028 MTHFSP49914 203 aa25.11■■□□□ 1.61
MCF2L-230ENST00000491028 RRS1Q15050 365 aaKnown RBP25.11■■□□□ 1.61
MCF2L-230ENST00000491028 ARHGEF25Q86VW2 580 aa25.11■■□□□ 1.61
MCF2L-230ENST00000491028 FLT4P35916 1363 aa25.1■■□□□ 1.61
MCF2L-230ENST00000491028 EMILIN1Q9Y6C2 1016 aa25.1■■□□□ 1.61
MCF2L-230ENST00000491028 COL18A1P39060 1754 aa25.08■■□□□ 1.61
MCF2L-230ENST00000491028 INSRP06213 1382 aa25.08■■□□□ 1.61
MCF2L-230ENST00000491028 KIAA0232Q92628 1395 aa25.08■■□□□ 1.61
MCF2L-230ENST00000491028 CFAP53Q96M91 514 aa25.08■■□□□ 1.61
MCF2L-230ENST00000491028 AMPHP49418 695 aa25.07■■□□□ 1.6
MCF2L-230ENST00000491028 ZC3H6P61129 1189 aaKnown RBP25.07■■□□□ 1.6
MCF2L-230ENST00000491028 COL14A1Q05707 1796 aaKnown RBP25.07■■□□□ 1.6
MCF2L-230ENST00000491028 COL3A1P02461 1466 aaPredicted RBP25.07■■□□□ 1.6
MCF2L-230ENST00000491028 BLMP54132 1417 aaPredicted RBP25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms