RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TOR4AQ9NXH8 423 aa4.74□□□□□ -1.65
HMGB1-208ENST00000490788 ZBTB24O43167 697 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-208ENST00000490788 FOXC1Q12948 553 aa4.73□□□□□ -1.65
HMGB1-208ENST00000490788 CCDC24Q8N4L8 307 aa4.73□□□□□ -1.65
HMGB1-208ENST00000490788 HELBQ8NG08 1087 aaPredicted RBP4.73□□□□□ -1.65
HMGB1-208ENST00000490788 PCDHGC3Q9UN70 934 aa4.73□□□□□ -1.65
HMGB1-208ENST00000490788 PLEKHG3A1L390 1219 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 AXIN1O15169 862 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 IGHA1P01876 353 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 JUNDP17535 347 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 HRCP23327 699 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 GSK3AP49840 483 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 TUSC1Q2TAM9 212 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 CYP4X1Q8N118 509 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 TMEM151AQ8N4L1 468 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 FAM160A2Q8N612 972 aaPredicted RBP4.72□□□□□ -1.65
HMGB1-208ENST00000490788 PRR7Q8TB68 274 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 KRTAP4-12Q9BQ66 201 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 LIMD1Q9UGP4 676 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 PCDHB15Q9Y5E8 787 aa4.72□□□□□ -1.65
HMGB1-208ENST00000490788 CABLES1Q8TDN4 633 aa4.71□□□□□ -1.66
HMGB1-208ENST00000490788 GOPCQ9HD26 462 aa4.71□□□□□ -1.66
HMGB1-208ENST00000490788 PRDM9Q9NQV7 894 aa4.71□□□□□ -1.66
HMGB1-208ENST00000490788 GMPR2Q9P2T1 348 aaKnown RBP4.71□□□□□ -1.66
HMGB1-208ENST00000490788 FCF1Q9Y324 198 aaKnown RBP4.71□□□□□ -1.66
HMGB1-208ENST00000490788 LILRB3O75022 631 aa4.7□□□□□ -1.66
HMGB1-208ENST00000490788 MMP16P51512 607 aa4.7□□□□□ -1.66
HMGB1-208ENST00000490788 QPCTQ16769 361 aa4.7□□□□□ -1.66
HMGB1-208ENST00000490788 NUDT12Q9BQG2 462 aa4.7□□□□□ -1.66
HMGB1-208ENST00000490788 DXOO77932 396 aaKnown RBP4.69□□□□□ -1.66
HMGB1-208ENST00000490788 CTHP32929 405 aa4.69□□□□□ -1.66
HMGB1-208ENST00000490788 DESI1Q6ICB0 168 aa4.69□□□□□ -1.66
HMGB1-208ENST00000490788 PROCA1Q8NCQ7 364 aaPredicted RBP4.69□□□□□ -1.66
HMGB1-208ENST00000490788 SLC16A10Q8TF71 515 aa4.69□□□□□ -1.66
HMGB1-208ENST00000490788 KRTAP4-7Q9BYR0 210 aa4.69□□□□□ -1.66
HMGB1-208ENST00000490788 DACH1Q9UI36 760 aa4.69□□□□□ -1.66
HMGB1-208ENST00000490788 TTC24A2A3L6 582 aaPredicted RBP4.68□□□□□ -1.66
HMGB1-208ENST00000490788 CFAP99D6REC4 459 aa4.68□□□□□ -1.66
HMGB1-208ENST00000490788 CCNYL3P0C7X3 344 aa4.68□□□□□ -1.66
HMGB1-208ENST00000490788 PTPRNQ16849 979 aa4.68□□□□□ -1.66
HMGB1-208ENST00000490788 WNT7AO00755 349 aa4.67□□□□□ -1.66
HMGB1-208ENST00000490788 AP1G2O75843 785 aa4.67□□□□□ -1.66
HMGB1-208ENST00000490788 RTL5Q5HYW3 569 aaPredicted RBP4.67□□□□□ -1.66
HMGB1-208ENST00000490788 SNIP1Q8TAD8 396 aaKnown RBP4.67□□□□□ -1.66
HMGB1-208ENST00000490788 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.67□□□□□ -1.66
HMGB1-208ENST00000490788 GDF11O95390 407 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 TMEM259Q4ZIN3 620 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 PPP2R2DQ66LE6 453 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 LYPD8Q6UX82 237 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 PNMA1Q8ND90 353 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 SENP2Q9HC62 589 aa4.66□□□□□ -1.66
HMGB1-208ENST00000490788 SMPD1P17405 629 aa4.65□□□□□ -1.67
HMGB1-208ENST00000490788 RFC5P40937 340 aa4.65□□□□□ -1.67
HMGB1-208ENST00000490788 KCNH2Q12809 1159 aa4.65□□□□□ -1.67
HMGB1-208ENST00000490788 EVA1BQ9NVM1 165 aa4.65□□□□□ -1.67
HMGB1-208ENST00000490788 RNF225M0QZC1 329 aaPredicted RBP4.64□□□□□ -1.67
HMGB1-208ENST00000490788 APBB1O00213 710 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 GMPRP36959 345 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 CTDSPL2Q05D32 466 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 TRIM32Q13049 653 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 TMEM132AQ24JP5 1023 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 ARMC2Q8NEN0 867 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 KIFC2Q96AC6 838 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 TRIM47Q96LD4 638 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 UNC93B1Q9H1C4 597 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 ATP13A2Q9NQ11 1180 aa4.64□□□□□ -1.67
HMGB1-208ENST00000490788 RASSF7Q02833 373 aa4.63□□□□□ -1.67
HMGB1-208ENST00000490788 AGERQ15109 404 aa4.63□□□□□ -1.67
HMGB1-208ENST00000490788 IRF7Q92985 503 aa4.63□□□□□ -1.67
HMGB1-208ENST00000490788 PRM3Q9NNZ6 103 aa4.63□□□□□ -1.67
HMGB1-208ENST00000490788 PER1O15534 1290 aaPredicted RBP4.62□□□□□ -1.67
HMGB1-208ENST00000490788 USP17L8P0C7I0 530 aa4.62□□□□□ -1.67
HMGB1-208ENST00000490788 SNRPBP14678 240 aaKnown RBP4.62□□□□□ -1.67
HMGB1-208ENST00000490788 NBPF14Q5TI25 921 aa4.62□□□□□ -1.67
HMGB1-208ENST00000490788 NPAS3Q8IXF0 933 aa4.62□□□□□ -1.67
HMGB1-208ENST00000490788 MRGPRX2Q96LB1 330 aa4.62□□□□□ -1.67
HMGB1-208ENST00000490788 MAP10Q9P2G4 905 aa4.62□□□□□ -1.67
HMGB1-208ENST00000490788 J3QL48 77 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 WNT7BP56706 349 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 FOXK2Q01167 660 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 LINC01559Q495D7 138 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 PTCRAQ6ISU1 281 aaPredicted RBP4.61□□□□□ -1.67
HMGB1-208ENST00000490788 BANK1Q8NDB2 785 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 EHBP1Q8NDI1 1231 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 LRRN4Q8WUT4 740 aa4.61□□□□□ -1.67
HMGB1-208ENST00000490788 ADAM23O75077 832 aa4.6□□□□□ -1.67
HMGB1-208ENST00000490788 F12P00748 615 aaPredicted RBP4.6□□□□□ -1.67
HMGB1-208ENST00000490788 NR6A1Q15406 480 aa4.6□□□□□ -1.67
HMGB1-208ENST00000490788 BAP1Q92560 729 aa4.6□□□□□ -1.67
HMGB1-208ENST00000490788 RC3H1Q5TC82 1133 aaKnown RBP4.59□□□□□ -1.67
HMGB1-208ENST00000490788 FBXO31Q5XUX0 539 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-208ENST00000490788 BPHLQ86WA6 291 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-208ENST00000490788 ZNF511Q8NB15 262 aa4.59□□□□□ -1.67
HMGB1-208ENST00000490788 HPS1Q92902 700 aa4.59□□□□□ -1.67
HMGB1-208ENST00000490788 GPKOWQ92917 476 aaPredicted RBP eCLIP4.59□□□□□ -1.67
HMGB1-208ENST00000490788 FKBPLQ9UIM3 349 aa4.59□□□□□ -1.67
HMGB1-208ENST00000490788 DNMT3AQ9Y6K1 912 aaPredicted RBP4.59□□□□□ -1.67
HMGB1-208ENST00000490788 ZC3H4Q9UPT8 1303 aaKnown RBP4.58□□□□□ -1.68
HMGB1-208ENST00000490788 SH3BP2P78314 561 aa4.58□□□□□ -1.68
HMGB1-208ENST00000490788 FAM174AQ8TBP5 190 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms