RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 USP6P35125 1406 aa17.27■□□□□ 0.35
HDAC1-210ENST00000490081 ZNF316A6NFI3 1004 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-210ENST00000490081 LRRC59Q96AG4 307 aaKnown RBP17.26■□□□□ 0.35
HDAC1-210ENST00000490081 TRPM3Q9HCF6 1732 aaPredicted RBP17.26■□□□□ 0.35
HDAC1-210ENST00000490081 SHPRHQ149N8 1683 aa17.25■□□□□ 0.35
HDAC1-210ENST00000490081 A0A1W2PP64 1363 aa17.25■□□□□ 0.35
HDAC1-210ENST00000490081 LRP6O75581 1613 aa17.25■□□□□ 0.35
HDAC1-210ENST00000490081 EDC4Q6P2E9 1401 aaKnown RBP17.24■□□□□ 0.35
HDAC1-210ENST00000490081 KTN1Q86UP2 1357 aaKnown RBP17.24■□□□□ 0.35
HDAC1-210ENST00000490081 SPATA31A3Q5VYP0 1347 aa17.23■□□□□ 0.35
HDAC1-210ENST00000490081 TTC21AQ8NDW8 1320 aa17.23■□□□□ 0.35
HDAC1-210ENST00000490081 SPATA31A6Q5VVP1 1343 aa17.22■□□□□ 0.35
HDAC1-210ENST00000490081 DDX17Q92841 729 aaKnown RBP17.22■□□□□ 0.35
HDAC1-210ENST00000490081 NRKQ7Z2Y5 1582 aa17.22■□□□□ 0.35
HDAC1-210ENST00000490081 ALS2Q96Q42 1657 aa17.22■□□□□ 0.35
HDAC1-210ENST00000490081 CARD14Q9BXL6 1004 aa17.21■□□□□ 0.35
HDAC1-210ENST00000490081 PANK3Q9H999 370 aa17.21■□□□□ 0.35
HDAC1-210ENST00000490081 TTC21BQ7Z4L5 1316 aa17.21■□□□□ 0.34
HDAC1-210ENST00000490081 ARHGEF10O15013 1369 aa17.2■□□□□ 0.34
HDAC1-210ENST00000490081 PER1O15534 1290 aaPredicted RBP17.2■□□□□ 0.34
HDAC1-210ENST00000490081 TNS3Q68CZ2 1445 aa17.2■□□□□ 0.34
HDAC1-210ENST00000490081 POLR3GLQ9BT43 218 aa17.19■□□□□ 0.34
HDAC1-210ENST00000490081 COL22A1Q8NFW1 1626 aaPredicted RBP17.18■□□□□ 0.34
HDAC1-210ENST00000490081 USP31Q70CQ4 1352 aa17.18■□□□□ 0.34
HDAC1-210ENST00000490081 USP54Q70EL1 1684 aa17.18■□□□□ 0.34
HDAC1-210ENST00000490081 XPCQ01831 940 aaPredicted RBP17.17■□□□□ 0.34
HDAC1-210ENST00000490081 PNPLA6Q8IY17 1366 aa17.15■□□□□ 0.34
HDAC1-210ENST00000490081 NPC1L1Q9UHC9 1359 aa17.15■□□□□ 0.34
HDAC1-210ENST00000490081 NLRP13Q86W25 1043 aa17.15■□□□□ 0.34
HDAC1-210ENST00000490081 ABTB2Q8N961 1025 aa17.15■□□□□ 0.34
HDAC1-210ENST00000490081 CGNL1Q0VF96 1302 aa17.15■□□□□ 0.34
HDAC1-210ENST00000490081 PIK3C2AO00443 1686 aa17.14■□□□□ 0.33
HDAC1-210ENST00000490081 FYB1O15117 783 aa17.14■□□□□ 0.33
HDAC1-210ENST00000490081 PAK3O75914 559 aaPredicted RBP17.14■□□□□ 0.33
HDAC1-210ENST00000490081 NSD2O96028 1365 aa17.14■□□□□ 0.33
HDAC1-210ENST00000490081 NSD3Q9BZ95 1437 aa17.13■□□□□ 0.33
HDAC1-210ENST00000490081 KNSTRNQ9Y448 316 aa17.13■□□□□ 0.33
HDAC1-210ENST00000490081 USP19O94966 1318 aa17.13■□□□□ 0.33
HDAC1-210ENST00000490081 KIF20BQ96Q89 1820 aa17.12■□□□□ 0.33
HDAC1-210ENST00000490081 MARF1Q9Y4F3 1742 aaKnown RBP17.11■□□□□ 0.33
HDAC1-210ENST00000490081 CRYBG1Q9Y4K1 1723 aa17.11■□□□□ 0.33
HDAC1-210ENST00000490081 NLRP6P59044 892 aa17.11■□□□□ 0.33
HDAC1-210ENST00000490081 AMER1Q5JTC6 1135 aaPredicted RBP17.11■□□□□ 0.33
HDAC1-210ENST00000490081 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.11■□□□□ 0.33
HDAC1-210ENST00000490081 NME9Q86XW9 330 aa17.1■□□□□ 0.33
HDAC1-210ENST00000490081 OVOS2A0A0J9YW53 1432 aa17.1■□□□□ 0.33
HDAC1-210ENST00000490081 OVOS2Q6IE36 1432 aa17.1■□□□□ 0.33
HDAC1-210ENST00000490081 DDX10Q13206 875 aaKnown RBP17.09■□□□□ 0.33
HDAC1-210ENST00000490081 MEX3CQ5U5Q3 659 aaKnown RBP17.09■□□□□ 0.33
HDAC1-210ENST00000490081 ZNF772Q68DY9 489 aaPredicted RBP17.09■□□□□ 0.33
HDAC1-210ENST00000490081 SLIT3O75094 1523 aa17.09■□□□□ 0.33
HDAC1-210ENST00000490081 ANKRD26Q9UPS8 1709 aa17.09■□□□□ 0.33
HDAC1-210ENST00000490081 KCNH5Q8NCM2 988 aa17.08■□□□□ 0.32
HDAC1-210ENST00000490081 NUTM2BA6NNL0 878 aaPredicted RBP17.07■□□□□ 0.32
HDAC1-210ENST00000490081 NUTM2EB1AL46 878 aaPredicted RBP17.07■□□□□ 0.32
HDAC1-210ENST00000490081 LMOD2Q6P5Q4 547 aa17.07■□□□□ 0.32
HDAC1-210ENST00000490081 NUTM2AQ8IVF1 878 aaPredicted RBP17.07■□□□□ 0.32
HDAC1-210ENST00000490081 COG3Q96JB2 828 aa17.07■□□□□ 0.32
HDAC1-210ENST00000490081 ABCA3Q99758 1704 aa17.06■□□□□ 0.32
HDAC1-210ENST00000490081 GCP02774 474 aa17.05■□□□□ 0.32
HDAC1-210ENST00000490081 GGNBP2Q9H3C7 697 aa17.05■□□□□ 0.32
HDAC1-210ENST00000490081 PHRF1Q9P1Y6 1649 aaKnown RBP17.05■□□□□ 0.32
HDAC1-210ENST00000490081 CPDO75976 1380 aa17.04■□□□□ 0.32
HDAC1-210ENST00000490081 AATKQ6ZMQ8 1374 aa17.03■□□□□ 0.32
HDAC1-210ENST00000490081 AFF2P51816 1311 aa17.03■□□□□ 0.32
HDAC1-210ENST00000490081 ZRANB1Q9UGI0 708 aa17.03■□□□□ 0.32
HDAC1-210ENST00000490081 NFAT5O94916 1531 aa17.02■□□□□ 0.32
HDAC1-210ENST00000490081 CDK12Q9NYV4 1490 aaPredicted RBP17.02■□□□□ 0.32
HDAC1-210ENST00000490081 NUTM2GQ5VZR2 741 aa17.02■□□□□ 0.32
HDAC1-210ENST00000490081 CABLES1Q8TDN4 633 aa17.01■□□□□ 0.31
HDAC1-210ENST00000490081 KIF24Q5T7B8 1368 aa17.01■□□□□ 0.31
HDAC1-210ENST00000490081 ABCC6O95255 1503 aa17.01■□□□□ 0.31
HDAC1-210ENST00000490081 RXRBP28702 533 aa17■□□□□ 0.31
HDAC1-210ENST00000490081 ARHGEF25Q86VW2 580 aa17■□□□□ 0.31
HDAC1-210ENST00000490081 MORC1Q86VD1 984 aa16.99■□□□□ 0.31
HDAC1-210ENST00000490081 MAP2P11137 1827 aaKnown RBP16.98■□□□□ 0.31
HDAC1-210ENST00000490081 C8orf37Q96NL8 207 aa16.98■□□□□ 0.31
HDAC1-210ENST00000490081 HAP1P54257 671 aaPredicted RBP16.97■□□□□ 0.31
HDAC1-210ENST00000490081 RALBP1Q15311 655 aa16.97■□□□□ 0.31
HDAC1-210ENST00000490081 UPF1Q92900 1129 aaKnown RBP eCLIP16.97■□□□□ 0.31
HDAC1-210ENST00000490081 PARD3Q8TEW0 1356 aa16.97■□□□□ 0.31
HDAC1-210ENST00000490081 COL18A1P39060 1754 aa16.97■□□□□ 0.31
HDAC1-210ENST00000490081 COL14A1Q05707 1796 aaKnown RBP16.97■□□□□ 0.31
HDAC1-210ENST00000490081 CC2D1BQ5T0F9 858 aaKnown RBP16.96■□□□□ 0.31
HDAC1-210ENST00000490081 LTN1O94822 1766 aa16.95■□□□□ 0.3
HDAC1-210ENST00000490081 KIAA0232Q92628 1395 aa16.95■□□□□ 0.3
HDAC1-210ENST00000490081 FAM83GA6ND36 823 aa16.95■□□□□ 0.3
HDAC1-210ENST00000490081 ADAMTS2O95450 1211 aa16.95■□□□□ 0.3
HDAC1-210ENST00000490081 FNBP4Q8N3X1 1017 aaPredicted RBP16.95■□□□□ 0.3
HDAC1-210ENST00000490081 QTRT2Q9H974 415 aaKnown RBP16.95■□□□□ 0.3
HDAC1-210ENST00000490081 RGS12O14924 1447 aa16.95■□□□□ 0.3
HDAC1-210ENST00000490081 RTL1A6NKG5 1358 aa16.94■□□□□ 0.3
HDAC1-210ENST00000490081 NWD2Q9ULI1 1742 aa16.94■□□□□ 0.3
HDAC1-210ENST00000490081 ZC3H6P61129 1189 aaKnown RBP16.94■□□□□ 0.3
HDAC1-210ENST00000490081 POLKQ9UBT6 870 aa16.94■□□□□ 0.3
HDAC1-210ENST00000490081 SMG6Q86US8 1419 aaKnown RBP16.94■□□□□ 0.3
HDAC1-210ENST00000490081 LMO7Q8WWI1 1683 aa16.94■□□□□ 0.3
HDAC1-210ENST00000490081 SLIT2O94813 1529 aa16.93■□□□□ 0.3
HDAC1-210ENST00000490081 RBM6P78332 1123 aaKnown RBP16.93■□□□□ 0.3
HDAC1-210ENST00000490081 IP6K1Q92551 441 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms