RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 CABP1Q9NZU7 370 aa12.89□□□□□ -0.35
HDAC6-232ENST00000489053 TRPM1Q7Z4N2 1603 aa12.88□□□□□ -0.35
HDAC6-232ENST00000489053 GJD4Q96KN9 370 aaPredicted RBP12.88□□□□□ -0.35
HDAC6-232ENST00000489053 ATRNO75882 1429 aa12.88□□□□□ -0.35
HDAC6-232ENST00000489053 QRICH2Q9H0J4 1663 aa12.87□□□□□ -0.35
HDAC6-232ENST00000489053 POLR3AO14802 1390 aaPredicted RBP12.87□□□□□ -0.35
HDAC6-232ENST00000489053 RGS12O14924 1447 aa12.87□□□□□ -0.35
HDAC6-232ENST00000489053 ATAD2Q6PL18 1390 aa12.86□□□□□ -0.35
HDAC6-232ENST00000489053 NLRP13Q86W25 1043 aa12.86□□□□□ -0.35
HDAC6-232ENST00000489053 CCER1Q8TC90 406 aaPredicted RBP12.86□□□□□ -0.35
HDAC6-232ENST00000489053 BTG4Q9NY30 223 aa12.86□□□□□ -0.35
HDAC6-232ENST00000489053 BCL9LQ86UU0 1499 aa12.85□□□□□ -0.35
HDAC6-232ENST00000489053 RALGAPBQ86X10 1494 aa12.85□□□□□ -0.35
HDAC6-232ENST00000489053 ZBTB7CA1YPR0 619 aa12.85□□□□□ -0.35
HDAC6-232ENST00000489053 SLC24A1O60721 1099 aa12.85□□□□□ -0.35
HDAC6-232ENST00000489053 TMC1Q8TDI8 760 aa12.85□□□□□ -0.35
HDAC6-232ENST00000489053 BRD4O60885 1362 aaPredicted RBP12.84□□□□□ -0.35
HDAC6-232ENST00000489053 FAM83GA6ND36 823 aa12.84□□□□□ -0.35
HDAC6-232ENST00000489053 EVA1CP58658 441 aa12.84□□□□□ -0.35
HDAC6-232ENST00000489053 ZC3H6P61129 1189 aaKnown RBP12.84□□□□□ -0.35
HDAC6-232ENST00000489053 VPS72Q15906 364 aa12.84□□□□□ -0.35
HDAC6-232ENST00000489053 SLIT2O94813 1529 aa12.83□□□□□ -0.35
HDAC6-232ENST00000489053 NLRP6P59044 892 aa12.83□□□□□ -0.36
HDAC6-232ENST00000489053 UPF1Q92900 1129 aaKnown RBP eCLIP12.83□□□□□ -0.36
HDAC6-232ENST00000489053 ZNF692Q9BU19 519 aaPredicted RBP12.83□□□□□ -0.36
HDAC6-232ENST00000489053 CLSPNQ9HAW4 1339 aa12.83□□□□□ -0.36
HDAC6-232ENST00000489053 HDGFL2Q7Z4V5 671 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-232ENST00000489053 STRN4Q9NRL3 753 aa12.82□□□□□ -0.36
HDAC6-232ENST00000489053 TIMELESSQ9UNS1 1208 aa12.82□□□□□ -0.36
HDAC6-232ENST00000489053 TRPM3Q9HCF6 1732 aaPredicted RBP12.82□□□□□ -0.36
HDAC6-232ENST00000489053 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
HDAC6-232ENST00000489053 KIAA0232Q92628 1395 aa12.81□□□□□ -0.36
HDAC6-232ENST00000489053 SBNO2Q9Y2G9 1366 aa12.81□□□□□ -0.36
HDAC6-232ENST00000489053 TOPAZ1Q8N9V7 1692 aa12.81□□□□□ -0.36
HDAC6-232ENST00000489053 CHRNA2Q15822 529 aa12.81□□□□□ -0.36
HDAC6-232ENST00000489053 KTN1Q86UP2 1357 aaKnown RBP12.81□□□□□ -0.36
HDAC6-232ENST00000489053 USP6P35125 1406 aa12.8□□□□□ -0.36
HDAC6-232ENST00000489053 SF3B2Q13435 895 aaKnown RBP12.8□□□□□ -0.36
HDAC6-232ENST00000489053 SEPT12Q8IYM1 358 aa12.8□□□□□ -0.36
HDAC6-232ENST00000489053 TERF2IPQ9NYB0 399 aa12.8□□□□□ -0.36
HDAC6-232ENST00000489053 ALS2Q96Q42 1657 aa12.8□□□□□ -0.36
HDAC6-232ENST00000489053 ST20-MTHFSA0A0A6YYL1 179 aa12.79□□□□□ -0.36
HDAC6-232ENST00000489053 FAM98CQ17RN3 349 aaKnown RBP12.79□□□□□ -0.36
HDAC6-232ENST00000489053 SOX12O15370 315 aa12.78□□□□□ -0.36
HDAC6-232ENST00000489053 GCP02774 474 aa12.78□□□□□ -0.36
HDAC6-232ENST00000489053 TTC21AQ8NDW8 1320 aa12.78□□□□□ -0.36
HDAC6-232ENST00000489053 COL14A1Q05707 1796 aaKnown RBP12.78□□□□□ -0.36
HDAC6-232ENST00000489053 PLCH1Q4KWH8 1693 aa12.77□□□□□ -0.36
HDAC6-232ENST00000489053 ABCA3Q99758 1704 aa12.77□□□□□ -0.36
HDAC6-232ENST00000489053 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.77□□□□□ -0.36
HDAC6-232ENST00000489053 TMF1P82094 1093 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 CDCA8Q53HL2 280 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 KRT27Q7Z3Y8 459 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.77□□□□□ -0.37
HDAC6-232ENST00000489053 KCNH5Q8NCM2 988 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 USP35Q9P2H5 1018 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 USP19O94966 1318 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 TTC21BQ7Z4L5 1316 aa12.77□□□□□ -0.37
HDAC6-232ENST00000489053 NWD2Q9ULI1 1742 aa12.76□□□□□ -0.37
HDAC6-232ENST00000489053 CCDC125Q86Z20 511 aa12.76□□□□□ -0.37
HDAC6-232ENST00000489053 USP47Q96K76 1375 aa12.76□□□□□ -0.37
HDAC6-232ENST00000489053 CPDO75976 1380 aa12.75□□□□□ -0.37
HDAC6-232ENST00000489053 SPATA31A5Q5VU36 1347 aa12.75□□□□□ -0.37
HDAC6-232ENST00000489053 SPATA31A7Q8IWB4 1347 aa12.75□□□□□ -0.37
HDAC6-232ENST00000489053 PUS7Q96PZ0 661 aaKnown RBP12.75□□□□□ -0.37
HDAC6-232ENST00000489053 NINLQ9Y2I6 1382 aa12.74□□□□□ -0.37
HDAC6-232ENST00000489053 CSB-PGBD3P0DP91 1061 aa12.74□□□□□ -0.37
HDAC6-232ENST00000489053 SLC12A5Q9H2X9 1139 aa12.74□□□□□ -0.37
HDAC6-232ENST00000489053 GLI3P10071 1580 aa12.73□□□□□ -0.37
HDAC6-232ENST00000489053 EP400Q96L91 3159 aa12.73□□□□□ -0.37
HDAC6-232ENST00000489053 PHRF1Q9P1Y6 1649 aaKnown RBP12.73□□□□□ -0.37
HDAC6-232ENST00000489053 SPATA31A1Q5TZJ5 1347 aa12.72□□□□□ -0.37
HDAC6-232ENST00000489053 ONECUT3O60422 494 aaPredicted RBP12.72□□□□□ -0.37
HDAC6-232ENST00000489053 PDE3BQ13370 1112 aa12.72□□□□□ -0.37
HDAC6-232ENST00000489053 TOM1L2Q6ZVM7 507 aa12.72□□□□□ -0.37
HDAC6-232ENST00000489053 TCP11L2Q8N4U5 519 aa12.72□□□□□ -0.37
HDAC6-232ENST00000489053 NRKQ7Z2Y5 1582 aa12.72□□□□□ -0.37
HDAC6-232ENST00000489053 CPSF1Q10570 1443 aaKnown RBP12.71□□□□□ -0.37
HDAC6-232ENST00000489053 LARP1Q6PKG0 1096 aaKnown RBP12.71□□□□□ -0.37
HDAC6-232ENST00000489053 TESK2Q96S53 571 aa12.71□□□□□ -0.37
HDAC6-232ENST00000489053 EDC4Q6P2E9 1401 aaKnown RBP12.71□□□□□ -0.38
HDAC6-232ENST00000489053 SSH2Q76I76 1423 aa12.71□□□□□ -0.38
HDAC6-232ENST00000489053 AATKQ6ZMQ8 1374 aa12.7□□□□□ -0.38
HDAC6-232ENST00000489053 NME9Q86XW9 330 aa12.7□□□□□ -0.38
HDAC6-232ENST00000489053 POLR3GLQ9BT43 218 aa12.7□□□□□ -0.38
HDAC6-232ENST00000489053 BLMP54132 1417 aaPredicted RBP12.7□□□□□ -0.38
HDAC6-232ENST00000489053 A0A1W2PP64 1363 aa12.69□□□□□ -0.38
HDAC6-232ENST00000489053 COG3Q96JB2 828 aa12.69□□□□□ -0.38
HDAC6-232ENST00000489053 THRAP3Q9Y2W1 955 aaKnown RBP12.69□□□□□ -0.38
HDAC6-232ENST00000489053 NRAPQ86VF7 1730 aa12.68□□□□□ -0.38
HDAC6-232ENST00000489053 CRYBG1Q9Y4K1 1723 aa12.68□□□□□ -0.38
HDAC6-232ENST00000489053 BARGINQ6ZT62 677 aa12.68□□□□□ -0.38
HDAC6-232ENST00000489053 ZRANB1Q9UGI0 708 aa12.68□□□□□ -0.38
HDAC6-232ENST00000489053 SLIT3O75094 1523 aa12.67□□□□□ -0.38
HDAC6-232ENST00000489053 BAG6P46379 1132 aa12.67□□□□□ -0.38
HDAC6-232ENST00000489053 ARHGEF25Q86VW2 580 aa12.67□□□□□ -0.38
HDAC6-232ENST00000489053 CRB1P82279 1406 aa12.67□□□□□ -0.38
HDAC6-232ENST00000489053 EIF4G2P78344 907 aaKnown RBP eCLIP12.66□□□□□ -0.38
HDAC6-232ENST00000489053 FAM196AQ6ZSG2 479 aa12.66□□□□□ -0.38
HDAC6-232ENST00000489053 PIK3C2AO00443 1686 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms