RNA–Protein interactions for RNA: ENST00000488683.1

CLIC4-202, Transcript of chloride intracellular channel 4, humanhuman

TSL 2

Gene CLIC4, Length 2,723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-202ENST00000488683 NLRP1Q9C000 1473 aa16.29■□□□□ 0.2
CLIC4-202ENST00000488683 PDZRN3Q9UPQ7 1066 aa16.28■□□□□ 0.2
CLIC4-202ENST00000488683 FRAT2O75474 233 aaPredicted RBP16.28■□□□□ 0.2
CLIC4-202ENST00000488683 PLEKHF1Q96S99 279 aa16.28■□□□□ 0.2
CLIC4-202ENST00000488683 CLTCQ00610 1675 aaKnown RBP16.28■□□□□ 0.2
CLIC4-202ENST00000488683 ALKQ9UM73 1620 aa16.27■□□□□ 0.2
CLIC4-202ENST00000488683 CDK19Q9BWU1 502 aa16.27■□□□□ 0.2
CLIC4-202ENST00000488683 TRIM35Q9UPQ4 493 aa16.27■□□□□ 0.2
CLIC4-202ENST00000488683 ANKRD26Q9UPS8 1709 aa16.27■□□□□ 0.2
CLIC4-202ENST00000488683 HMOX1P09601 288 aa16.27■□□□□ 0.19
CLIC4-202ENST00000488683 SLKQ9H2G2 1235 aaPredicted RBP16.26■□□□□ 0.19
CLIC4-202ENST00000488683 SMC4Q9NTJ3 1288 aa16.26■□□□□ 0.19
CLIC4-202ENST00000488683 TMPOP42166 694 aaKnown RBP16.26■□□□□ 0.19
CLIC4-202ENST00000488683 ATAD2Q6PL18 1390 aa16.25■□□□□ 0.19
CLIC4-202ENST00000488683 TSPOAP1O95153 1857 aa16.25■□□□□ 0.19
CLIC4-202ENST00000488683 ELL2O00472 640 aaPredicted RBP16.25■□□□□ 0.19
CLIC4-202ENST00000488683 RIPK4P57078 832 aa16.25■□□□□ 0.19
CLIC4-202ENST00000488683 FTSJ3Q8IY81 847 aaKnown RBP16.25■□□□□ 0.19
CLIC4-202ENST00000488683 SSH1Q8WYL5 1049 aa16.25■□□□□ 0.19
CLIC4-202ENST00000488683 MYH16Q9H6N6 1097 aa16.25■□□□□ 0.19
CLIC4-202ENST00000488683 ITPRIPQ8IWB1 547 aa16.24■□□□□ 0.19
CLIC4-202ENST00000488683 ARHGEF40Q8TER5 1519 aa16.23■□□□□ 0.19
CLIC4-202ENST00000488683 FAM69CQ0P6D2 419 aa16.23■□□□□ 0.19
CLIC4-202ENST00000488683 TERF2IPQ9NYB0 399 aa16.23■□□□□ 0.19
CLIC4-202ENST00000488683 NOB1Q9ULX3 412 aaKnown RBP16.23■□□□□ 0.19
CLIC4-202ENST00000488683 NUTM2FA1L443 756 aa16.23■□□□□ 0.19
CLIC4-202ENST00000488683 TRIM27P14373 513 aa16.23■□□□□ 0.19
CLIC4-202ENST00000488683 MAPK8IP3Q9UPT6 1336 aa16.22■□□□□ 0.19
CLIC4-202ENST00000488683 KIF20BQ96Q89 1820 aa16.21■□□□□ 0.19
CLIC4-202ENST00000488683 PLPPR3Q6T4P5 718 aa16.21■□□□□ 0.19
CLIC4-202ENST00000488683 NCBP3Q53F19 620 aaKnown RBP16.21■□□□□ 0.19
CLIC4-202ENST00000488683 PHACTR3Q96KR7 559 aa16.21■□□□□ 0.19
CLIC4-202ENST00000488683 EMILIN1Q9Y6C2 1016 aa16.21■□□□□ 0.19
CLIC4-202ENST00000488683 MED14O60244 1454 aa16.21■□□□□ 0.18
CLIC4-202ENST00000488683 MVPQ14764 893 aaKnown RBP16.2■□□□□ 0.18
CLIC4-202ENST00000488683 DZIP1LQ8IYY4 767 aaKnown RBP16.2■□□□□ 0.18
CLIC4-202ENST00000488683 ZKSCAN2Q63HK3 967 aa16.2■□□□□ 0.18
CLIC4-202ENST00000488683 DIAPH1O60610 1272 aaKnown RBP16.19■□□□□ 0.18
CLIC4-202ENST00000488683 PRKAR2BP31323 418 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 TMEM57Q8N5G2 664 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 PMFBP1Q8TBY8 1022 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 C1orf115Q9H7X2 142 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 BRPF3Q9ULD4 1205 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 DIP2BQ9P265 1576 aa16.19■□□□□ 0.18
CLIC4-202ENST00000488683 SETD1AO15047 1707 aaKnown RBP16.18■□□□□ 0.18
CLIC4-202ENST00000488683 USP35Q9P2H5 1018 aa16.18■□□□□ 0.18
CLIC4-202ENST00000488683 HDGFL2Q7Z4V5 671 aaPredicted RBP16.18■□□□□ 0.18
CLIC4-202ENST00000488683 TXNDC2Q86VQ3 553 aa16.18■□□□□ 0.18
CLIC4-202ENST00000488683 NME9Q86XW9 330 aa16.18■□□□□ 0.18
CLIC4-202ENST00000488683 PNPLA6Q8IY17 1366 aa16.18■□□□□ 0.18
CLIC4-202ENST00000488683 A2ML1A8K2U0 1454 aa16.18■□□□□ 0.18
CLIC4-202ENST00000488683 RRS1Q15050 365 aaKnown RBP16.18■□□□□ 0.18
CLIC4-202ENST00000488683 ARXQ96QS3 562 aa16.17■□□□□ 0.18
CLIC4-202ENST00000488683 SOX12O15370 315 aa16.17■□□□□ 0.18
CLIC4-202ENST00000488683 RIMBP3CA6NJZ7 1639 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 RIMBP3BA6NNM3 1639 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 RIMBP3Q9UFD9 1639 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 LRRC7Q96NW7 1537 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 FAM83GA6ND36 823 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 DCTN1Q14203 1278 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 TSPYL6Q8N831 410 aa16.16■□□□□ 0.18
CLIC4-202ENST00000488683 MFAP1P55081 439 aaKnown RBP16.15■□□□□ 0.18
CLIC4-202ENST00000488683 POLKQ9UBT6 870 aa16.15■□□□□ 0.18
CLIC4-202ENST00000488683 MAP2P11137 1827 aaKnown RBP16.15■□□□□ 0.18
CLIC4-202ENST00000488683 AAMPQ13685 434 aa16.15■□□□□ 0.18
CLIC4-202ENST00000488683 RIMS2Q9UQ26 1411 aa16.14■□□□□ 0.17
CLIC4-202ENST00000488683 RWDD1Q9H446 243 aaPredicted RBP16.14■□□□□ 0.17
CLIC4-202ENST00000488683 SPATA31D1Q6ZQQ2 1576 aa16.14■□□□□ 0.17
CLIC4-202ENST00000488683 GSE1Q14687 1217 aa16.13■□□□□ 0.17
CLIC4-202ENST00000488683 CT47B1P0C2W7 299 aaPredicted RBP16.13■□□□□ 0.17
CLIC4-202ENST00000488683 ATF7IPQ6VMQ6 1270 aa16.13■□□□□ 0.17
CLIC4-202ENST00000488683 NRXN3Q9Y4C0 1643 aa16.13■□□□□ 0.17
CLIC4-202ENST00000488683 AGLP35573 1532 aa16.12■□□□□ 0.17
CLIC4-202ENST00000488683 DLC1Q96QB1 1528 aa16.12■□□□□ 0.17
CLIC4-202ENST00000488683 RSPH6AQ9H0K4 717 aa16.12■□□□□ 0.17
CLIC4-202ENST00000488683 CDC42BPGQ6DT37 1551 aa16.12■□□□□ 0.17
CLIC4-202ENST00000488683 REREQ9P2R6 1566 aa16.12■□□□□ 0.17
CLIC4-202ENST00000488683 LNPKQ9C0E8 428 aa16.11■□□□□ 0.17
CLIC4-202ENST00000488683 IL16Q14005 1332 aa16.11■□□□□ 0.17
CLIC4-202ENST00000488683 ATP7BP35670 1465 aa16.11■□□□□ 0.17
CLIC4-202ENST00000488683 FAM135BQ49AJ0 1406 aa16.11■□□□□ 0.17
CLIC4-202ENST00000488683 METP08581 1390 aa16.1■□□□□ 0.17
CLIC4-202ENST00000488683 FCHSD2O94868 740 aa16.09■□□□□ 0.17
CLIC4-202ENST00000488683 KRT24Q2M2I5 525 aa16.09■□□□□ 0.17
CLIC4-202ENST00000488683 TBC1D2Q9BYX2 928 aa16.09■□□□□ 0.17
CLIC4-202ENST00000488683 PPIP5K1Q6PFW1 1433 aa16.08■□□□□ 0.16
CLIC4-202ENST00000488683 WASLO00401 505 aaPredicted RBP16.07■□□□□ 0.16
CLIC4-202ENST00000488683 CPSF1Q10570 1443 aaKnown RBP16.07■□□□□ 0.16
CLIC4-202ENST00000488683 AEBP1Q8IUX7 1158 aa16.07■□□□□ 0.16
CLIC4-202ENST00000488683 TBC1D32Q96NH3 1257 aa16.07■□□□□ 0.16
CLIC4-202ENST00000488683 DDX19BQ9UMR2 479 aa16.07■□□□□ 0.16
CLIC4-202ENST00000488683 PPP6R1Q9UPN7 881 aa16.06■□□□□ 0.16
CLIC4-202ENST00000488683 CPS1P31327 1500 aa16.05■□□□□ 0.16
CLIC4-202ENST00000488683 HDAC1Q13547 482 aaPredicted RBP16.05■□□□□ 0.16
CLIC4-202ENST00000488683 ZMYM3Q14202 1370 aa16.05■□□□□ 0.16
CLIC4-202ENST00000488683 PNNQ9H307 717 aaKnown RBP16.05■□□□□ 0.16
CLIC4-202ENST00000488683 ZBTB40Q9NUA8 1239 aa16.05■□□□□ 0.16
CLIC4-202ENST00000488683 IL13P35225 146 aa16.04■□□□□ 0.16
CLIC4-202ENST00000488683 C8orf58Q8NAV2 365 aa16.04■□□□□ 0.16
CLIC4-202ENST00000488683 MBIPQ9NS73 344 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms