RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 LRP6O75581 1613 aa10.52□□□□□ -0.73
USP4-211ENST00000485450 CENPJQ9HC77 1338 aaPredicted RBP10.52□□□□□ -0.73
USP4-211ENST00000485450 ATAD2Q6PL18 1390 aa10.52□□□□□ -0.73
USP4-211ENST00000485450 USP6P35125 1406 aa10.51□□□□□ -0.73
USP4-211ENST00000485450 WASLO00401 505 aaPredicted RBP10.51□□□□□ -0.73
USP4-211ENST00000485450 RGL3Q3MIN7 710 aa10.51□□□□□ -0.73
USP4-211ENST00000485450 PARP4Q9UKK3 1724 aaKnown RBP10.51□□□□□ -0.73
USP4-211ENST00000485450 OVOS2A0A0J9YW53 1432 aa10.51□□□□□ -0.73
USP4-211ENST00000485450 NCAPD2Q15021 1401 aa10.51□□□□□ -0.73
USP4-211ENST00000485450 OVOS2Q6IE36 1432 aa10.51□□□□□ -0.73
USP4-211ENST00000485450 BRINP3Q76B58 766 aa10.5□□□□□ -0.73
USP4-211ENST00000485450 PNPLA6Q8IY17 1366 aa10.5□□□□□ -0.73
USP4-211ENST00000485450 USP19O94966 1318 aa10.5□□□□□ -0.73
USP4-211ENST00000485450 SHANK3Q9BYB0 1731 aa10.5□□□□□ -0.73
USP4-211ENST00000485450 PLEKHG2Q9H7P9 1386 aa10.5□□□□□ -0.73
USP4-211ENST00000485450 CHGAP10645 457 aaKnown RBP10.5□□□□□ -0.73
USP4-211ENST00000485450 RGPD3A6NKT7 1758 aaPredicted RBP10.49□□□□□ -0.73
USP4-211ENST00000485450 RGPD4Q7Z3J3 1758 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 PROSER2Q86WR7 435 aaPredicted RBP10.49□□□□□ -0.73
USP4-211ENST00000485450 CDK12Q9NYV4 1490 aaPredicted RBP10.49□□□□□ -0.73
USP4-211ENST00000485450 PEAK1Q9H792 1746 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 NEFLP07196 543 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 PRAM1Q96QH2 718 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 FGD1P98174 961 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 NUTM2DQ5VT03 806 aaPredicted RBP10.49□□□□□ -0.73
USP4-211ENST00000485450 TMEM132EQ6IEE7 984 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 SLAIN2Q9P270 581 aa10.49□□□□□ -0.73
USP4-211ENST00000485450 DISP3Q9P2K9 1392 aa10.48□□□□□ -0.73
USP4-211ENST00000485450 NPC1L1Q9UHC9 1359 aa10.48□□□□□ -0.73
USP4-211ENST00000485450 EDC4Q6P2E9 1401 aaKnown RBP10.48□□□□□ -0.73
USP4-211ENST00000485450 TOM1O60784 492 aa10.48□□□□□ -0.73
USP4-211ENST00000485450 SLIT2O94813 1529 aa10.48□□□□□ -0.73
USP4-211ENST00000485450 PPIP5K1Q6PFW1 1433 aa10.47□□□□□ -0.73
USP4-211ENST00000485450 ADAMTS7Q9UKP4 1686 aa10.47□□□□□ -0.73
USP4-211ENST00000485450 CPDO75976 1380 aa10.47□□□□□ -0.73
USP4-211ENST00000485450 ANKRD36BQ8N2N9 1353 aa10.47□□□□□ -0.73
USP4-211ENST00000485450 TAOK2Q9UL54 1235 aa10.46□□□□□ -0.73
USP4-211ENST00000485450 PKD1L3Q7Z443 1732 aa10.46□□□□□ -0.73
USP4-211ENST00000485450 WAPLQ7Z5K2 1190 aa10.46□□□□□ -0.73
USP4-211ENST00000485450 CICQ96RK0 1608 aaPredicted RBP10.46□□□□□ -0.74
USP4-211ENST00000485450 AAMPQ13685 434 aa10.46□□□□□ -0.74
USP4-211ENST00000485450 RGPD5Q99666 1765 aa10.45□□□□□ -0.74
USP4-211ENST00000485450 JCADQ9P266 1359 aa10.45□□□□□ -0.74
USP4-211ENST00000485450 SPATA31A6Q5VVP1 1343 aa10.45□□□□□ -0.74
USP4-211ENST00000485450 TULP1O00294 542 aaPredicted RBP10.45□□□□□ -0.74
USP4-211ENST00000485450 ARHGEF10O15013 1369 aa10.44□□□□□ -0.74
USP4-211ENST00000485450 SPATA31A3Q5VYP0 1347 aa10.43□□□□□ -0.74
USP4-211ENST00000485450 EVC2Q86UK5 1308 aa10.43□□□□□ -0.74
USP4-211ENST00000485450 PDE4CQ08493 712 aa10.43□□□□□ -0.74
USP4-211ENST00000485450 KIF24Q5T7B8 1368 aa10.42□□□□□ -0.74
USP4-211ENST00000485450 GLI3P10071 1580 aa10.42□□□□□ -0.74
USP4-211ENST00000485450 NSD2O96028 1365 aa10.42□□□□□ -0.74
USP4-211ENST00000485450 NPHP3Q7Z494 1330 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 TTC21AQ8NDW8 1320 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 PAK3O75914 559 aaPredicted RBP10.41□□□□□ -0.74
USP4-211ENST00000485450 ZNF831Q5JPB2 1677 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 ATRNO75882 1429 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 LRRC37A3O60309 1634 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 PDIA4P13667 645 aaKnown RBP10.41□□□□□ -0.74
USP4-211ENST00000485450 CDK19Q9BWU1 502 aa10.41□□□□□ -0.74
USP4-211ENST00000485450 C11orf95C9JLR9 678 aaPredicted RBP10.4□□□□□ -0.74
USP4-211ENST00000485450 CARD11Q9BXL7 1154 aa10.4□□□□□ -0.74
USP4-211ENST00000485450 TRAK1Q9UPV9 953 aa10.4□□□□□ -0.74
USP4-211ENST00000485450 A0A1W2PP64 1363 aa10.4□□□□□ -0.74
USP4-211ENST00000485450 INSRP06213 1382 aa10.4□□□□□ -0.74
USP4-211ENST00000485450 KDM2AQ9Y2K7 1162 aa10.4□□□□□ -0.74
USP4-211ENST00000485450 MAP2P11137 1827 aaKnown RBP10.4□□□□□ -0.75
USP4-211ENST00000485450 RBM10P98175 930 aaKnown RBP10.4□□□□□ -0.75
USP4-211ENST00000485450 BCL11BQ9C0K0 894 aaPredicted RBP10.4□□□□□ -0.75
USP4-211ENST00000485450 ATF3P18847 181 aa10.39□□□□□ -0.75
USP4-211ENST00000485450 CCDC61Q9Y6R9 512 aa10.39□□□□□ -0.75
USP4-211ENST00000485450 AATKQ6ZMQ8 1374 aa10.39□□□□□ -0.75
USP4-211ENST00000485450 NUDT16Q96DE0 195 aaKnown RBP10.39□□□□□ -0.75
USP4-211ENST00000485450 COL3A1P02461 1466 aaPredicted RBP10.39□□□□□ -0.75
USP4-211ENST00000485450 A0A0U1RQG5 324 aaPredicted RBP10.38□□□□□ -0.75
USP4-211ENST00000485450 NBR1Q14596 966 aa10.38□□□□□ -0.75
USP4-211ENST00000485450 RTL1A6NKG5 1358 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 HOMEZQ8IX15 550 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 KLHL34Q8N239 644 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 ZNF692Q9BU19 519 aaPredicted RBP10.37□□□□□ -0.75
USP4-211ENST00000485450 VIRMAQ69YN4 1812 aaKnown RBP10.37□□□□□ -0.75
USP4-211ENST00000485450 BRWD3Q6RI45 1802 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 SBF2Q86WG5 1849 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 BCL9LQ86UU0 1499 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 TNS1Q9HBL0 1735 aaKnown RBP10.37□□□□□ -0.75
USP4-211ENST00000485450 CCDC7Q96M83 1385 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 PHF8Q9UPP1 1060 aa10.37□□□□□ -0.75
USP4-211ENST00000485450 RGPD2P0DJD1 1756 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 ST20-MTHFSA0A0A6YYL1 179 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 VSIG10Q8N0Z9 540 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 BCL9O00512 1426 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 WASHC2AQ641Q2 1341 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 COL24A1Q17RW2 1714 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 ILDR1Q86SU0 546 aaPredicted RBP10.36□□□□□ -0.75
USP4-211ENST00000485450 UBAP1LF5GYI3 381 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 ORAI2Q96SN7 254 aa10.36□□□□□ -0.75
USP4-211ENST00000485450 PAPPAQ13219 1627 aa10.35□□□□□ -0.75
USP4-211ENST00000485450 QSER1Q2KHR3 1735 aa10.35□□□□□ -0.75
USP4-211ENST00000485450 HSPA1LP34931 641 aa10.35□□□□□ -0.75
USP4-211ENST00000485450 DISP2A7MBM2 1401 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms