RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 NR1H3Q13133 447 aa11.14□□□□□ -0.63
VPS50-212ENST00000476413 EVA1BQ9NVM1 165 aa11.14□□□□□ -0.63
VPS50-212ENST00000476413 TJAP1Q5JTD0 557 aa11.13□□□□□ -0.63
VPS50-212ENST00000476413 PPP1R12CQ9BZL4 782 aa11.13□□□□□ -0.63
VPS50-212ENST00000476413 ZC3H4Q9UPT8 1303 aaKnown RBP11.12□□□□□ -0.63
VPS50-212ENST00000476413 ADH1BP00325 375 aa11.12□□□□□ -0.63
VPS50-212ENST00000476413 TRIM26Q12899 539 aaPredicted RBP11.12□□□□□ -0.63
VPS50-212ENST00000476413 PNMA1Q8ND90 353 aa11.12□□□□□ -0.63
VPS50-212ENST00000476413 NUDT12Q9BQG2 462 aa11.12□□□□□ -0.63
VPS50-212ENST00000476413 ZBBXA8MT70 800 aa11.11□□□□□ -0.63
VPS50-212ENST00000476413 PPP1R15AO75807 674 aaPredicted RBP11.11□□□□□ -0.63
VPS50-212ENST00000476413 KCNH2Q12809 1159 aa11.11□□□□□ -0.63
VPS50-212ENST00000476413 ZNF516Q92618 1163 aa11.11□□□□□ -0.63
VPS50-212ENST00000476413 OCSTAMPQ9BR26 566 aa11.11□□□□□ -0.63
VPS50-212ENST00000476413 PALM3A6NDB9 673 aaPredicted RBP11.1□□□□□ -0.63
VPS50-212ENST00000476413 CTHP32929 405 aa11.1□□□□□ -0.63
VPS50-212ENST00000476413 RETREG2Q8NC44 543 aa11.1□□□□□ -0.63
VPS50-212ENST00000476413 PDIA4P13667 645 aaKnown RBP11.09□□□□□ -0.63
VPS50-212ENST00000476413 PTPN5P54829 565 aa11.09□□□□□ -0.63
VPS50-212ENST00000476413 SEMA3FQ13275 785 aa11.09□□□□□ -0.63
VPS50-212ENST00000476413 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.08□□□□□ -0.64
VPS50-212ENST00000476413 EIF4G2P78344 907 aaKnown RBP eCLIP11.08□□□□□ -0.64
VPS50-212ENST00000476413 SPNS2Q8IVW8 549 aa11.08□□□□□ -0.64
VPS50-212ENST00000476413 PTCRAQ6ISU1 281 aaPredicted RBP11.07□□□□□ -0.64
VPS50-212ENST00000476413 PBXIP1Q96AQ6 731 aa11.07□□□□□ -0.64
VPS50-212ENST00000476413 TRAIPQ9BWF2 469 aa11.07□□□□□ -0.64
VPS50-212ENST00000476413 IL21Q9HBE4 155 aa11.07□□□□□ -0.64
VPS50-212ENST00000476413 TFIP11Q9UBB9 837 aaKnown RBP11.07□□□□□ -0.64
VPS50-212ENST00000476413 MYT1LQ9UL68 1186 aa11.07□□□□□ -0.64
VPS50-212ENST00000476413 RFX1P22670 979 aa11.06□□□□□ -0.64
VPS50-212ENST00000476413 PDXDC2PQ6P474 469 aa11.05□□□□□ -0.64
VPS50-212ENST00000476413 TBC1D9Q6ZT07 1266 aa11.05□□□□□ -0.64
VPS50-212ENST00000476413 PIK3CDO00329 1044 aa11.04□□□□□ -0.64
VPS50-212ENST00000476413 MMRN1Q13201 1228 aa11.04□□□□□ -0.64
VPS50-212ENST00000476413 NKX2-3Q8TAU0 364 aa11.04□□□□□ -0.64
VPS50-212ENST00000476413 GPKOWQ92917 476 aaPredicted RBP eCLIP11.04□□□□□ -0.64
VPS50-212ENST00000476413 SLC6A16Q9GZN6 736 aa11.04□□□□□ -0.64
VPS50-212ENST00000476413 GPSM3Q9Y4H4 160 aa11.04□□□□□ -0.64
VPS50-212ENST00000476413 MAFBQ9Y5Q3 323 aaPredicted RBP11.04□□□□□ -0.64
VPS50-212ENST00000476413 LMOD1P29536 600 aaPredicted RBP11.03□□□□□ -0.64
VPS50-212ENST00000476413 ARMC2Q8NEN0 867 aa11.03□□□□□ -0.64
VPS50-212ENST00000476413 UNC93B1Q9H1C4 597 aa11.03□□□□□ -0.64
VPS50-212ENST00000476413 ATP9BO43861 1147 aa11.01□□□□□ -0.65
VPS50-212ENST00000476413 NBPF14Q5TI25 921 aa11.01□□□□□ -0.65
VPS50-212ENST00000476413 PTK2Q05397 1052 aa11□□□□□ -0.65
VPS50-212ENST00000476413 SH3BP5LQ7L8J4 393 aa11□□□□□ -0.65
VPS50-212ENST00000476413 FAM174AQ8TBP5 190 aa11□□□□□ -0.65
VPS50-212ENST00000476413 S1PR4O95977 384 aa10.99□□□□□ -0.65
VPS50-212ENST00000476413 CCDC24Q8N4L8 307 aa10.99□□□□□ -0.65
VPS50-212ENST00000476413 PODXL2Q9NZ53 605 aa10.99□□□□□ -0.65
VPS50-212ENST00000476413 SH3RF1Q7Z6J0 888 aa10.98□□□□□ -0.65
VPS50-212ENST00000476413 NFATC2IPQ8NCF5 419 aa10.98□□□□□ -0.65
VPS50-212ENST00000476413 ACIN1Q9UKV3 1341 aaKnown RBP10.98□□□□□ -0.65
VPS50-212ENST00000476413 ADAM32Q8TC27 787 aa10.97□□□□□ -0.65
VPS50-212ENST00000476413 CEP126Q9P2H0 1117 aa10.97□□□□□ -0.65
VPS50-212ENST00000476413 PHTF2Q8N3S3 785 aa10.96□□□□□ -0.65
VPS50-212ENST00000476413 ARHGAP9Q9BRR9 750 aa10.96□□□□□ -0.65
VPS50-212ENST00000476413 FCF1Q9Y324 198 aaKnown RBP10.96□□□□□ -0.65
VPS50-212ENST00000476413 KANK4Q5T7N3 995 aaPredicted RBP10.95□□□□□ -0.66
VPS50-212ENST00000476413 ATG7O95352 703 aa10.94□□□□□ -0.66
VPS50-212ENST00000476413 CDCA8Q53HL2 280 aa10.94□□□□□ -0.66
VPS50-212ENST00000476413 BAP1Q92560 729 aa10.94□□□□□ -0.66
VPS50-212ENST00000476413 PCDHB9Q9Y5E1 797 aa10.94□□□□□ -0.66
VPS50-212ENST00000476413 C4orf48Q5BLP8 95 aa10.93□□□□□ -0.66
VPS50-212ENST00000476413 PLEKHM2Q8IWE5 1019 aa10.93□□□□□ -0.66
VPS50-212ENST00000476413 CHIC2Q9UKJ5 165 aa10.93□□□□□ -0.66
VPS50-212ENST00000476413 USP17L3A6NCW0 530 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 USP17L4A6NCW7 530 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 USP17L5A8MUK1 530 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 ITGBL1O95965 494 aaPredicted RBP10.92□□□□□ -0.66
VPS50-212ENST00000476413 SKIP12755 728 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 MCCD1P59942 119 aaPredicted RBP10.92□□□□□ -0.66
VPS50-212ENST00000476413 USP17L2Q6R6M4 530 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 USP17L1Q7RTZ2 530 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 FOXJ1Q92949 421 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 USTQ9Y2C2 406 aa10.92□□□□□ -0.66
VPS50-212ENST00000476413 CARNS1A5YM72 827 aa10.91□□□□□ -0.66
VPS50-212ENST00000476413 ZNF511Q8NB15 262 aa10.91□□□□□ -0.66
VPS50-212ENST00000476413 TMEM88BA6NKF7 163 aa10.9□□□□□ -0.66
VPS50-212ENST00000476413 PPEF1O14829 653 aaPredicted RBP10.9□□□□□ -0.66
VPS50-212ENST00000476413 LINC01559Q495D7 138 aa10.9□□□□□ -0.66
VPS50-212ENST00000476413 ERFEQ4G0M1 354 aa10.9□□□□□ -0.66
VPS50-212ENST00000476413 ZBTB33Q86T24 672 aa10.9□□□□□ -0.66
VPS50-212ENST00000476413 DEPDC4Q8N2C3 294 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 KCTD17Q8N5Z5 321 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 ZNF592Q92610 1267 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 C1QTNF2Q9BXJ5 285 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 CARD14Q9BXL6 1004 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 VRTNQ9H8Y1 702 aa10.89□□□□□ -0.67
VPS50-212ENST00000476413 MAGEB6P1A0A0J9YX57 407 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 CSB-PGBD3P0DP91 1061 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 TSGA10IPQ3SY00 556 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 SLFNL1Q499Z3 407 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 TRAF7Q6Q0C0 670 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 RNF135Q8IUD6 432 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 ZMIZ1Q9ULJ6 1067 aa10.88□□□□□ -0.67
VPS50-212ENST00000476413 ZBTB7CA1YPR0 619 aa10.87□□□□□ -0.67
VPS50-212ENST00000476413 SH3BP2P78314 561 aa10.87□□□□□ -0.67
VPS50-212ENST00000476413 KCNC4Q03721 635 aa10.87□□□□□ -0.67
VPS50-212ENST00000476413 PLA2G2CQ5R387 149 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms