RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 CCDC125Q86Z20 511 aa10.19□□□□□ -0.78
HDAC3-207ENST00000475549 POLR3AO14802 1390 aaPredicted RBP10.18□□□□□ -0.78
HDAC3-207ENST00000475549 CABP2Q9NPB3 220 aa10.18□□□□□ -0.78
HDAC3-207ENST00000475549 CCDC9Q9Y3X0 531 aaKnown RBP10.18□□□□□ -0.78
HDAC3-207ENST00000475549 TRPM3Q9HCF6 1732 aaPredicted RBP10.17□□□□□ -0.78
HDAC3-207ENST00000475549 CHRNA2Q15822 529 aa10.17□□□□□ -0.78
HDAC3-207ENST00000475549 FAM98CQ17RN3 349 aaKnown RBP10.17□□□□□ -0.78
HDAC3-207ENST00000475549 DEFB132Q7Z7B7 95 aa10.17□□□□□ -0.78
HDAC3-207ENST00000475549 MARF1Q9Y4F3 1742 aaKnown RBP10.16□□□□□ -0.78
HDAC3-207ENST00000475549 SPATA31A5Q5VU36 1347 aa10.16□□□□□ -0.78
HDAC3-207ENST00000475549 SPATA31A7Q8IWB4 1347 aa10.16□□□□□ -0.78
HDAC3-207ENST00000475549 ZC3H6P61129 1189 aaKnown RBP10.16□□□□□ -0.78
HDAC3-207ENST00000475549 NEUROD1Q13562 356 aa10.16□□□□□ -0.78
HDAC3-207ENST00000475549 KRT27Q7Z3Y8 459 aa10.16□□□□□ -0.78
HDAC3-207ENST00000475549 PRDM11Q9NQV5 511 aa10.16□□□□□ -0.78
HDAC3-207ENST00000475549 KIAA0232Q92628 1395 aa10.15□□□□□ -0.78
HDAC3-207ENST00000475549 CENPJQ9HC77 1338 aaPredicted RBP10.15□□□□□ -0.78
HDAC3-207ENST00000475549 SRPK2P78362 688 aaKnown RBP10.15□□□□□ -0.78
HDAC3-207ENST00000475549 FAM182BQ5T319 152 aa10.15□□□□□ -0.78
HDAC3-207ENST00000475549 CABP1Q9NZU7 370 aa10.15□□□□□ -0.78
HDAC3-207ENST00000475549 ALS2Q96Q42 1657 aa10.15□□□□□ -0.79
HDAC3-207ENST00000475549 BLMP54132 1417 aaPredicted RBP10.15□□□□□ -0.79
HDAC3-207ENST00000475549 ARHGEF28Q8N1W1 1705 aaKnown RBP10.14□□□□□ -0.79
HDAC3-207ENST00000475549 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.14□□□□□ -0.79
HDAC3-207ENST00000475549 ABTB2Q8N961 1025 aa10.14□□□□□ -0.79
HDAC3-207ENST00000475549 ZRANB1Q9UGI0 708 aa10.14□□□□□ -0.79
HDAC3-207ENST00000475549 SPATA31A1Q5TZJ5 1347 aa10.13□□□□□ -0.79
HDAC3-207ENST00000475549 ABCA3Q99758 1704 aa10.13□□□□□ -0.79
HDAC3-207ENST00000475549 USP19O94966 1318 aa10.12□□□□□ -0.79
HDAC3-207ENST00000475549 GCP02774 474 aa10.12□□□□□ -0.79
HDAC3-207ENST00000475549 STRN4Q9NRL3 753 aa10.12□□□□□ -0.79
HDAC3-207ENST00000475549 PPIP5K1Q6PFW1 1433 aa10.12□□□□□ -0.79
HDAC3-207ENST00000475549 PLCH1Q4KWH8 1693 aa10.12□□□□□ -0.79
HDAC3-207ENST00000475549 A0A0G2JS52 829 aa10.11□□□□□ -0.79
HDAC3-207ENST00000475549 MYT1Q01538 1121 aa10.11□□□□□ -0.79
HDAC3-207ENST00000475549 LARP1Q6PKG0 1096 aaKnown RBP10.11□□□□□ -0.79
HDAC3-207ENST00000475549 NWD2Q9ULI1 1742 aa10.1□□□□□ -0.79
HDAC3-207ENST00000475549 SSH2Q76I76 1423 aa10.1□□□□□ -0.79
HDAC3-207ENST00000475549 USP35Q9P2H5 1018 aa10.1□□□□□ -0.79
HDAC3-207ENST00000475549 CPDO75976 1380 aa10.1□□□□□ -0.79
HDAC3-207ENST00000475549 KIAA1210Q9ULL0 1709 aa10.1□□□□□ -0.79
HDAC3-207ENST00000475549 COL14A1Q05707 1796 aaKnown RBP10.09□□□□□ -0.79
HDAC3-207ENST00000475549 NLRP13Q86W25 1043 aa10.09□□□□□ -0.79
HDAC3-207ENST00000475549 NRAPQ86VF7 1730 aa10.09□□□□□ -0.79
HDAC3-207ENST00000475549 CRYBG1Q9Y4K1 1723 aa10.09□□□□□ -0.79
HDAC3-207ENST00000475549 CAMTA1Q9Y6Y1 1673 aa10.09□□□□□ -0.79
HDAC3-207ENST00000475549 EVA1CP58658 441 aa10.08□□□□□ -0.8
HDAC3-207ENST00000475549 EN1Q05925 392 aaPredicted RBP10.08□□□□□ -0.8
HDAC3-207ENST00000475549 SF3B2Q13435 895 aaKnown RBP10.08□□□□□ -0.8
HDAC3-207ENST00000475549 BARGINQ6ZT62 677 aa10.08□□□□□ -0.8
HDAC3-207ENST00000475549 ROCK2O75116 1388 aaKnown RBP10.08□□□□□ -0.8
HDAC3-207ENST00000475549 TOPAZ1Q8N9V7 1692 aa10.08□□□□□ -0.8
HDAC3-207ENST00000475549 EVC2Q86UK5 1308 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 USP6P35125 1406 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 BRWD3Q6RI45 1802 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 NLRP6P59044 892 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 TCP11L2Q8N4U5 519 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 AXIN2Q9Y2T1 843 aa10.07□□□□□ -0.8
HDAC3-207ENST00000475549 BRD4O60885 1362 aaPredicted RBP10.06□□□□□ -0.8
HDAC3-207ENST00000475549 TRIM37O94972 964 aa10.06□□□□□ -0.8
HDAC3-207ENST00000475549 TTC21BQ7Z4L5 1316 aa10.06□□□□□ -0.8
HDAC3-207ENST00000475549 THSD7AQ9UPZ6 1657 aa10.06□□□□□ -0.8
HDAC3-207ENST00000475549 PSDA5PKW4 1024 aaPredicted RBP10.05□□□□□ -0.8
HDAC3-207ENST00000475549 BAG6P46379 1132 aa10.05□□□□□ -0.8
HDAC3-207ENST00000475549 FAM196AQ6ZSG2 479 aa10.05□□□□□ -0.8
HDAC3-207ENST00000475549 CAMKK2Q96RR4 588 aa10.05□□□□□ -0.8
HDAC3-207ENST00000475549 ZNF692Q9BU19 519 aaPredicted RBP10.05□□□□□ -0.8
HDAC3-207ENST00000475549 NRKQ7Z2Y5 1582 aa10.05□□□□□ -0.8
HDAC3-207ENST00000475549 AATKQ6ZMQ8 1374 aa10.04□□□□□ -0.8
HDAC3-207ENST00000475549 EZH2Q15910 746 aaKnown RBP10.04□□□□□ -0.8
HDAC3-207ENST00000475549 ARHGEF25Q86VW2 580 aa10.04□□□□□ -0.8
HDAC3-207ENST00000475549 CPSF1Q10570 1443 aaKnown RBP10.04□□□□□ -0.8
HDAC3-207ENST00000475549 PHRF1Q9P1Y6 1649 aaKnown RBP10.04□□□□□ -0.8
HDAC3-207ENST00000475549 ZBTB7CA1YPR0 619 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 PDE3BQ13370 1112 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 ITSN1Q15811 1721 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 CARD11Q9BXL7 1154 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 SLC12A5Q9H2X9 1139 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 THRAP3Q9Y2W1 955 aaKnown RBP10.03□□□□□ -0.8
HDAC3-207ENST00000475549 TRPM1Q7Z4N2 1603 aa10.03□□□□□ -0.8
HDAC3-207ENST00000475549 COL5A2P05997 1499 aaPredicted RBP10.03□□□□□ -0.8
HDAC3-207ENST00000475549 DISP2A7MBM2 1401 aa10.02□□□□□ -0.81
HDAC3-207ENST00000475549 APBA3O96018 575 aa10.02□□□□□ -0.81
HDAC3-207ENST00000475549 PTF1AQ7RTS3 328 aa10.02□□□□□ -0.81
HDAC3-207ENST00000475549 LMO7Q8WWI1 1683 aa10.02□□□□□ -0.81
HDAC3-207ENST00000475549 SLIT3O75094 1523 aa10.02□□□□□ -0.81
HDAC3-207ENST00000475549 SOX12O15370 315 aa10.01□□□□□ -0.81
HDAC3-207ENST00000475549 R3HDM1Q15032 1099 aaKnown RBP10.01□□□□□ -0.81
HDAC3-207ENST00000475549 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.01□□□□□ -0.81
HDAC3-207ENST00000475549 TESK2Q96S53 571 aa10.01□□□□□ -0.81
HDAC3-207ENST00000475549 CD163L1Q9NR16 1453 aa10.01□□□□□ -0.81
HDAC3-207ENST00000475549 QRICH2Q9H0J4 1663 aa10.01□□□□□ -0.81
HDAC3-207ENST00000475549 SBNO2Q9Y2G9 1366 aa10.01□□□□□ -0.81
HDAC3-207ENST00000475549 CRB1P82279 1406 aa10□□□□□ -0.81
HDAC3-207ENST00000475549 TOM1L2Q6ZVM7 507 aa10□□□□□ -0.81
HDAC3-207ENST00000475549 NME9Q86XW9 330 aa10□□□□□ -0.81
HDAC3-207ENST00000475549 TTC21AQ8NDW8 1320 aa10□□□□□ -0.81
HDAC3-207ENST00000475549 KTN1Q86UP2 1357 aaKnown RBP10□□□□□ -0.81
HDAC3-207ENST00000475549 MARCH10Q8NA82 808 aaPredicted RBP9.99□□□□□ -0.81
HDAC3-207ENST00000475549 KCNH5Q8NCM2 988 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 96.6 ms