RNA–Protein interactions for RNA: ENST00000474048.1

PRPF38A-202, Transcript of pre-mRNA processing factor 38A, humanhuman

TSL 1 (best)

Gene PRPF38A, Length 1,059 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-202ENST00000474048 PAK3O75914 559 aaPredicted RBP13.85□□□□□ -0.19
PRPF38A-202ENST00000474048 ADRA2BP18089 450 aa13.85□□□□□ -0.19
PRPF38A-202ENST00000474048 NLRP13Q86W25 1043 aa13.85□□□□□ -0.19
PRPF38A-202ENST00000474048 COG3Q96JB2 828 aa13.85□□□□□ -0.19
PRPF38A-202ENST00000474048 NRKQ7Z2Y5 1582 aa13.84□□□□□ -0.19
PRPF38A-202ENST00000474048 MST1RQ04912 1400 aa13.84□□□□□ -0.19
PRPF38A-202ENST00000474048 GGNBP2Q9H3C7 697 aa13.83□□□□□ -0.2
PRPF38A-202ENST00000474048 TNNT2P45379 298 aaPredicted RBP13.82□□□□□ -0.2
PRPF38A-202ENST00000474048 CFAP53Q96M91 514 aa13.82□□□□□ -0.2
PRPF38A-202ENST00000474048 NPHP3Q7Z494 1330 aa13.82□□□□□ -0.2
PRPF38A-202ENST00000474048 TTC21BQ7Z4L5 1316 aa13.82□□□□□ -0.2
PRPF38A-202ENST00000474048 ORAI2Q96SN7 254 aa13.81□□□□□ -0.2
PRPF38A-202ENST00000474048 LTBP4Q8N2S1 1624 aa13.8□□□□□ -0.2
PRPF38A-202ENST00000474048 LMOD2Q6P5Q4 547 aa13.8□□□□□ -0.2
PRPF38A-202ENST00000474048 SLAIN2Q9P270 581 aa13.8□□□□□ -0.2
PRPF38A-202ENST00000474048 FYB1O15117 783 aa13.79□□□□□ -0.2
PRPF38A-202ENST00000474048 FOXO3O43524 673 aa13.79□□□□□ -0.2
PRPF38A-202ENST00000474048 PPP2R1AP30153 589 aa13.79□□□□□ -0.2
PRPF38A-202ENST00000474048 NME9Q86XW9 330 aa13.79□□□□□ -0.2
PRPF38A-202ENST00000474048 ABTB2Q8N961 1025 aa13.79□□□□□ -0.2
PRPF38A-202ENST00000474048 WDR43Q15061 677 aaKnown RBP eCLIP13.78□□□□□ -0.2
PRPF38A-202ENST00000474048 YTHDC1Q96MU7 727 aaKnown RBP13.78□□□□□ -0.2
PRPF38A-202ENST00000474048 NLRP6P59044 892 aa13.77□□□□□ -0.21
PRPF38A-202ENST00000474048 KRT28Q7Z3Y7 464 aa13.77□□□□□ -0.21
PRPF38A-202ENST00000474048 PIK3C2AO00443 1686 aa13.76□□□□□ -0.21
PRPF38A-202ENST00000474048 TOM1O60784 492 aa13.76□□□□□ -0.21
PRPF38A-202ENST00000474048 FAM9BQ8IZU0 186 aa13.76□□□□□ -0.21
PRPF38A-202ENST00000474048 SCAF1Q9H7N4 1312 aaKnown RBP13.75□□□□□ -0.21
PRPF38A-202ENST00000474048 XPCQ01831 940 aaPredicted RBP13.75□□□□□ -0.21
PRPF38A-202ENST00000474048 PPM1GO15355 546 aaPredicted RBP13.74□□□□□ -0.21
PRPF38A-202ENST00000474048 BRINP3Q76B58 766 aa13.74□□□□□ -0.21
PRPF38A-202ENST00000474048 IQSEC2Q5JU85 1478 aa13.74□□□□□ -0.21
PRPF38A-202ENST00000474048 OVOS2A0A0J9YW53 1432 aa13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 OVOS2Q6IE36 1432 aa13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 SSH2Q76I76 1423 aa13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 SOX12O15370 315 aa13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 NUDCQ9Y266 331 aa13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 TRPM3Q9HCF6 1732 aaPredicted RBP13.73□□□□□ -0.21
PRPF38A-202ENST00000474048 USP54Q70EL1 1684 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 ROBO1Q9Y6N7 1651 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 SBNO1A3KN83 1393 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 ARHGEF10O15013 1369 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 USP31Q70CQ4 1352 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 MAP2P11137 1827 aaKnown RBP13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 HAP1P54257 671 aaPredicted RBP13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 NUTM2GQ5VZR2 741 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 KCNH5Q8NCM2 988 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 TNS3Q68CZ2 1445 aa13.72□□□□□ -0.21
PRPF38A-202ENST00000474048 AATKQ6ZMQ8 1374 aa13.71□□□□□ -0.21
PRPF38A-202ENST00000474048 MTHFSP49914 203 aa13.71□□□□□ -0.21
PRPF38A-202ENST00000474048 NHSL1Q5SYE7 1610 aa13.71□□□□□ -0.22
PRPF38A-202ENST00000474048 UBAP1LF5GYI3 381 aa13.7□□□□□ -0.22
PRPF38A-202ENST00000474048 PLEKHG5O94827 1062 aa13.7□□□□□ -0.22
PRPF38A-202ENST00000474048 ZRANB1Q9UGI0 708 aa13.7□□□□□ -0.22
PRPF38A-202ENST00000474048 ALS2Q96Q42 1657 aa13.69□□□□□ -0.22
PRPF38A-202ENST00000474048 ZBTB7CA1YPR0 619 aa13.69□□□□□ -0.22
PRPF38A-202ENST00000474048 AMPHP49418 695 aa13.69□□□□□ -0.22
PRPF38A-202ENST00000474048 PXDNQ92626 1479 aa13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 CDK12Q9NYV4 1490 aaPredicted RBP13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 NEFMP07197 916 aa13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 CENPBP07199 599 aaPredicted RBP13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 PIP4K2BP78356 416 aa13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 CCDC184Q52MB2 194 aa13.68□□□□□ -0.22
PRPF38A-202ENST00000474048 DDX17Q92841 729 aaKnown RBP13.67□□□□□ -0.22
PRPF38A-202ENST00000474048 LTN1O94822 1766 aa13.67□□□□□ -0.22
PRPF38A-202ENST00000474048 PHLPP1O60346 1717 aa13.67□□□□□ -0.22
PRPF38A-202ENST00000474048 SPATA31A3Q5VYP0 1347 aa13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 SMG6Q86US8 1419 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 AHDC1Q5TGY3 1603 aaPredicted RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 U2SURPO15042 1029 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 DIAPH1O60610 1272 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 HNRNPUQ00839 825 aaKnown RBP eCLIP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 RRS1Q15050 365 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 CERKQ8TCT0 537 aa13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 PNISRQ8TF01 805 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 PNNQ9H307 717 aaKnown RBP13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 FLT4P35916 1363 aa13.66□□□□□ -0.22
PRPF38A-202ENST00000474048 POLKQ9UBT6 870 aa13.65□□□□□ -0.22
PRPF38A-202ENST00000474048 EMILIN1Q9Y6C2 1016 aa13.65□□□□□ -0.22
PRPF38A-202ENST00000474048 KIF24Q5T7B8 1368 aa13.65□□□□□ -0.22
PRPF38A-202ENST00000474048 SOS2Q07890 1332 aaPredicted RBP13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 PHRF1Q9P1Y6 1649 aaKnown RBP13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 MARF1Q9Y4F3 1742 aaKnown RBP13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 RTL1A6NKG5 1358 aa13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 MSH5O43196 834 aa13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 LRRC59Q96AG4 307 aaKnown RBP13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 SLIT3O75094 1523 aa13.64□□□□□ -0.23
PRPF38A-202ENST00000474048 MED1Q15648 1581 aaPredicted RBP13.63□□□□□ -0.23
PRPF38A-202ENST00000474048 U2AF1L5P0DN76 240 aaPredicted RBP13.63□□□□□ -0.23
PRPF38A-202ENST00000474048 U2AF1Q01081 240 aaKnown RBP eCLIP13.63□□□□□ -0.232e-6■□□□□ 9.7
PRPF38A-202ENST00000474048 USP19O94966 1318 aa13.63□□□□□ -0.23
PRPF38A-202ENST00000474048 MAP3K19Q56UN5 1328 aa13.63□□□□□ -0.23
PRPF38A-202ENST00000474048 SHPRHQ149N8 1683 aa13.63□□□□□ -0.23
PRPF38A-202ENST00000474048 GCP02774 474 aa13.62□□□□□ -0.23
PRPF38A-202ENST00000474048 MAPK8IP3Q9UPT6 1336 aa13.62□□□□□ -0.23
PRPF38A-202ENST00000474048 INSRP06213 1382 aa13.61□□□□□ -0.23
PRPF38A-202ENST00000474048 NFAT5O94916 1531 aa13.61□□□□□ -0.23
PRPF38A-202ENST00000474048 FBLN1P23142 703 aa13.6□□□□□ -0.23
PRPF38A-202ENST00000474048 ADAMTS8Q9UP79 889 aa13.59□□□□□ -0.23
PRPF38A-202ENST00000474048 COL3A1P02461 1466 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms