RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 POM121CA8CG34 1229 aa9.34□□□□□ -0.91
PRPF40A-208ENST00000472760 GPR37L1O60883 481 aa9.34□□□□□ -0.91
PRPF40A-208ENST00000472760 KCNC4Q03721 635 aa9.34□□□□□ -0.91
PRPF40A-208ENST00000472760 VAC14Q08AM6 782 aa9.34□□□□□ -0.91
PRPF40A-208ENST00000472760 S1PR4O95977 384 aa9.33□□□□□ -0.92
PRPF40A-208ENST00000472760 CCDC82Q8N4S0 544 aa9.33□□□□□ -0.92
PRPF40A-208ENST00000472760 ARMC2Q8NEN0 867 aa9.33□□□□□ -0.92
PRPF40A-208ENST00000472760 CCDC97Q96F63 343 aaPredicted RBP9.33□□□□□ -0.92
PRPF40A-208ENST00000472760 CALR3Q96L12 384 aaKnown RBP9.33□□□□□ -0.92
PRPF40A-208ENST00000472760 ARXQ96QS3 562 aa9.32□□□□□ -0.92
PRPF40A-208ENST00000472760 SERPINA10Q9UK55 444 aa9.32□□□□□ -0.92
PRPF40A-208ENST00000472760 ZC3H4Q9UPT8 1303 aaKnown RBP9.31□□□□□ -0.92
PRPF40A-208ENST00000472760 GLMNQ92990 594 aa9.3□□□□□ -0.92
PRPF40A-208ENST00000472760 ITGBL1O95965 494 aaPredicted RBP9.29□□□□□ -0.92
PRPF40A-208ENST00000472760 HDGFL1Q5TGJ6 251 aa9.29□□□□□ -0.92
PRPF40A-208ENST00000472760 UNC93B1Q9H1C4 597 aa9.29□□□□□ -0.92
PRPF40A-208ENST00000472760 FCF1Q9Y324 198 aaKnown RBP9.29□□□□□ -0.92
PRPF40A-208ENST00000472760 ZBBXA8MT70 800 aa9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 EIF4G2P78344 907 aaKnown RBP eCLIP9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 NR1H3Q13133 447 aa9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 NBPF14Q5TI25 921 aa9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 PTCRAQ6ISU1 281 aaPredicted RBP9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 GPKOWQ92917 476 aaPredicted RBP eCLIP9.28□□□□□ -0.92
PRPF40A-208ENST00000472760 SOX11P35716 441 aa9.27□□□□□ -0.93
PRPF40A-208ENST00000472760 GGCXP38435 758 aa9.27□□□□□ -0.93
PRPF40A-208ENST00000472760 PTK2Q05397 1052 aa9.27□□□□□ -0.93
PRPF40A-208ENST00000472760 SEMA3FQ13275 785 aa9.27□□□□□ -0.93
PRPF40A-208ENST00000472760 FBXO45P0C2W1 286 aa9.26□□□□□ -0.93
PRPF40A-208ENST00000472760 PDXDC2PQ6P474 469 aa9.26□□□□□ -0.93
PRPF40A-208ENST00000472760 HOMEZQ8IX15 550 aa9.26□□□□□ -0.93
PRPF40A-208ENST00000472760 PPEF1O14829 653 aaPredicted RBP9.25□□□□□ -0.93
PRPF40A-208ENST00000472760 GPSM3Q9Y4H4 160 aa9.25□□□□□ -0.93
PRPF40A-208ENST00000472760 ADAMTS19Q8TE59 1207 aa9.24□□□□□ -0.93
PRPF40A-208ENST00000472760 ALG2Q9H553 416 aa9.24□□□□□ -0.93
PRPF40A-208ENST00000472760 ZBTB24O43167 697 aaPredicted RBP9.23□□□□□ -0.93
PRPF40A-208ENST00000472760 RNF223E7ERA6 249 aa9.22□□□□□ -0.93
PRPF40A-208ENST00000472760 BAP1Q92560 729 aa9.22□□□□□ -0.93
PRPF40A-208ENST00000472760 ARHGAP9Q9BRR9 750 aa9.22□□□□□ -0.93
PRPF40A-208ENST00000472760 AGERQ15109 404 aa9.21□□□□□ -0.94
PRPF40A-208ENST00000472760 LINC01559Q495D7 138 aa9.21□□□□□ -0.94
PRPF40A-208ENST00000472760 ZBTB33Q86T24 672 aa9.21□□□□□ -0.94
PRPF40A-208ENST00000472760 ANKLE1Q8NAG6 615 aa9.21□□□□□ -0.94
PRPF40A-208ENST00000472760 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.21□□□□□ -0.94
PRPF40A-208ENST00000472760 PPP1R18Q6NYC8 613 aa9.2□□□□□ -0.94
PRPF40A-208ENST00000472760 ZNF592Q92610 1267 aa9.2□□□□□ -0.94
PRPF40A-208ENST00000472760 SH3BP5LQ7L8J4 393 aa9.19□□□□□ -0.94
PRPF40A-208ENST00000472760 BPHLQ86WA6 291 aaPredicted RBP9.19□□□□□ -0.94
PRPF40A-208ENST00000472760 ZNF511Q8NB15 262 aa9.19□□□□□ -0.94
PRPF40A-208ENST00000472760 ADAM32Q8TC27 787 aa9.19□□□□□ -0.94
PRPF40A-208ENST00000472760 PCDHB9Q9Y5E1 797 aa9.19□□□□□ -0.94
PRPF40A-208ENST00000472760 MAGEB6P1A0A0J9YX57 407 aa9.18□□□□□ -0.94
PRPF40A-208ENST00000472760 MCCD1P59942 119 aaPredicted RBP9.18□□□□□ -0.94
PRPF40A-208ENST00000472760 OCSTAMPQ9BR26 566 aa9.18□□□□□ -0.94
PRPF40A-208ENST00000472760 CARD14Q9BXL6 1004 aa9.18□□□□□ -0.94
PRPF40A-208ENST00000472760 PPP1R12CQ9BZL4 782 aa9.17□□□□□ -0.94
PRPF40A-208ENST00000472760 DZIP3Q86Y13 1208 aaKnown RBP9.16□□□□□ -0.94
PRPF40A-208ENST00000472760 FOXJ1Q92949 421 aa9.16□□□□□ -0.94
PRPF40A-208ENST00000472760 RFX1P22670 979 aa9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 SH3BP2P78314 561 aa9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 TRIM32Q13049 653 aa9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 PLA2G2CQ5R387 149 aa9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 SH3RF1Q7Z6J0 888 aa9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 TFIP11Q9UBB9 837 aaKnown RBP9.15□□□□□ -0.94
PRPF40A-208ENST00000472760 PALM3A6NDB9 673 aaPredicted RBP9.14□□□□□ -0.95
PRPF40A-208ENST00000472760 UCN2Q96RP3 112 aa9.14□□□□□ -0.95
PRPF40A-208ENST00000472760 CEP126Q9P2H0 1117 aa9.14□□□□□ -0.95
PRPF40A-208ENST00000472760 CD2BP2O95400 341 aaKnown RBP9.13□□□□□ -0.95
PRPF40A-208ENST00000472760 LMOD1P29536 600 aaPredicted RBP9.13□□□□□ -0.95
PRPF40A-208ENST00000472760 RPIAP49247 311 aa9.13□□□□□ -0.95
PRPF40A-208ENST00000472760 SLFNL1Q499Z3 407 aa9.13□□□□□ -0.95
PRPF40A-208ENST00000472760 ERFEQ4G0M1 354 aa9.12□□□□□ -0.95
PRPF40A-208ENST00000472760 C4orf48Q5BLP8 95 aa9.12□□□□□ -0.95
PRPF40A-208ENST00000472760 CFAP70Q5T0N1 1121 aa9.12□□□□□ -0.95
PRPF40A-208ENST00000472760 IFFO2Q5TF58 517 aa9.12□□□□□ -0.95
PRPF40A-208ENST00000472760 TBC1D9Q6ZT07 1266 aa9.12□□□□□ -0.95
PRPF40A-208ENST00000472760 ATP9BO43861 1147 aa9.11□□□□□ -0.95
PRPF40A-208ENST00000472760 PPP1R15AO75807 674 aaPredicted RBP9.11□□□□□ -0.95
PRPF40A-208ENST00000472760 SKIP12755 728 aa9.11□□□□□ -0.95
PRPF40A-208ENST00000472760 WNT7BP56706 349 aa9.11□□□□□ -0.95
PRPF40A-208ENST00000472760 SLC10A4Q96EP9 437 aa9.11□□□□□ -0.95
PRPF40A-208ENST00000472760 ACIN1Q9UKV3 1341 aaKnown RBP9.1□□□□□ -0.95
PRPF40A-208ENST00000472760 PIK3CDO00329 1044 aa9.1□□□□□ -0.95
PRPF40A-208ENST00000472760 RNF135Q8IUD6 432 aa9.1□□□□□ -0.95
PRPF40A-208ENST00000472760 NFATC2IPQ8NCF5 419 aa9.1□□□□□ -0.95
PRPF40A-208ENST00000472760 VARSP26640 1264 aaKnown RBP9.09□□□□□ -0.95
PRPF40A-208ENST00000472760 SKOR1P84550 965 aa9.09□□□□□ -0.95
PRPF40A-208ENST00000472760 PBXIP1Q96AQ6 731 aa9.09□□□□□ -0.95
PRPF40A-208ENST00000472760 PLA2G2EQ9NZK7 142 aa9.09□□□□□ -0.95
PRPF40A-208ENST00000472760 MAFBQ9Y5Q3 323 aaPredicted RBP9.09□□□□□ -0.95
PRPF40A-208ENST00000472760 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.08□□□□□ -0.96
PRPF40A-208ENST00000472760 LIAT1Q6ZQX7 453 aa9.08□□□□□ -0.96
PRPF40A-208ENST00000472760 FAM174AQ8TBP5 190 aa9.08□□□□□ -0.96
PRPF40A-208ENST00000472760 C1QTNF2Q9BXJ5 285 aa9.08□□□□□ -0.96
PRPF40A-208ENST00000472760 SLC19A1P41440 591 aa9.07□□□□□ -0.96
PRPF40A-208ENST00000472760 NBPF20Q3BBV1 942 aa9.07□□□□□ -0.96
PRPF40A-208ENST00000472760 EHBP1Q8NDI1 1231 aa9.07□□□□□ -0.96
PRPF40A-208ENST00000472760 CDV3Q9UKY7 258 aaKnown RBP9.07□□□□□ -0.96
PRPF40A-208ENST00000472760 GIGYF1O75420 1035 aaPredicted RBP9.06□□□□□ -0.96
PRPF40A-208ENST00000472760 RC3H1Q5TC82 1133 aaKnown RBP9.06□□□□□ -0.96
PRPF40A-208ENST00000472760 RNF20Q5VTR2 975 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms