RNA–Protein interactions for RNA: ENST00000469858.5

SMC4-211, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,971 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-211ENST00000469858 CCDC146Q8IYE0 955 aa24.11■■□□□ 1.45
SMC4-211ENST00000469858 SMG6Q86US8 1419 aaKnown RBP24.11■■□□□ 1.45
SMC4-211ENST00000469858 MAP2P11137 1827 aaKnown RBP24.11■■□□□ 1.45
SMC4-211ENST00000469858 ZRANB1Q9UGI0 708 aa24.11■■□□□ 1.45
SMC4-211ENST00000469858 TTC21BQ7Z4L5 1316 aa24.09■■□□□ 1.45
SMC4-211ENST00000469858 NUDCQ9Y266 331 aa24.09■■□□□ 1.45
SMC4-211ENST00000469858 NGDNQ8NEJ9 315 aaKnown RBP24.08■■□□□ 1.45
SMC4-211ENST00000469858 COG3Q96JB2 828 aa24.08■■□□□ 1.45
SMC4-211ENST00000469858 SUPT16HQ9Y5B9 1047 aaKnown RBP24.08■■□□□ 1.45
SMC4-211ENST00000469858 LMTK3Q96Q04 1460 aa24.07■■□□□ 1.44
SMC4-211ENST00000469858 C14orf37Q86TY3 774 aa24.07■■□□□ 1.44
SMC4-211ENST00000469858 COL3A1P02461 1466 aaPredicted RBP24.06■■□□□ 1.44
SMC4-211ENST00000469858 FBLN1P23142 703 aa24.06■■□□□ 1.44
SMC4-211ENST00000469858 NEFLP07196 543 aa24.05■■□□□ 1.44
SMC4-211ENST00000469858 SSH2Q76I76 1423 aa24.04■■□□□ 1.44
SMC4-211ENST00000469858 PROSER2Q86WR7 435 aaPredicted RBP24.03■■□□□ 1.44
SMC4-211ENST00000469858 PDE3BQ13370 1112 aa24.03■■□□□ 1.44
SMC4-211ENST00000469858 POLKQ9UBT6 870 aa24.03■■□□□ 1.44
SMC4-211ENST00000469858 STRCP1A6NGW2 1772 aa24.03■■□□□ 1.44
SMC4-211ENST00000469858 APAF1O14727 1248 aa24.02■■□□□ 1.44
SMC4-211ENST00000469858 PPM1GO15355 546 aaPredicted RBP24.02■■□□□ 1.43
SMC4-211ENST00000469858 FKBP8Q14318 412 aa24.02■■□□□ 1.43
SMC4-211ENST00000469858 PNPLA6Q8IY17 1366 aa24.01■■□□□ 1.43
SMC4-211ENST00000469858 OVOS2A0A0J9YW53 1432 aa24.01■■□□□ 1.43
SMC4-211ENST00000469858 OVOS2Q6IE36 1432 aa24.01■■□□□ 1.43
SMC4-211ENST00000469858 AATKQ6ZMQ8 1374 aa24■■□□□ 1.43
SMC4-211ENST00000469858 TTC21AQ8NDW8 1320 aa24■■□□□ 1.43
SMC4-211ENST00000469858 U2AF1L5P0DN76 240 aaPredicted RBP24■■□□□ 1.43
SMC4-211ENST00000469858 U2AF1Q01081 240 aaKnown RBP eCLIP24■■□□□ 1.435e-12■■■■■ 47.2
SMC4-211ENST00000469858 STRCQ7RTU9 1775 aa24■■□□□ 1.43
SMC4-211ENST00000469858 CDCA7LQ96GN5 454 aa23.99■■□□□ 1.43
SMC4-211ENST00000469858 EMILIN1Q9Y6C2 1016 aa23.99■■□□□ 1.43
SMC4-211ENST00000469858 U2SURPO15042 1029 aaKnown RBP23.98■■□□□ 1.43
SMC4-211ENST00000469858 DIAPH1O60610 1272 aaKnown RBP23.98■■□□□ 1.43
SMC4-211ENST00000469858 RUNDC1Q96C34 613 aa23.98■■□□□ 1.43
SMC4-211ENST00000469858 PHF8Q9UPP1 1060 aa23.98■■□□□ 1.43
SMC4-211ENST00000469858 PIK3C2AO00443 1686 aa23.98■■□□□ 1.43
SMC4-211ENST00000469858 CDK12Q9NYV4 1490 aaPredicted RBP23.96■■□□□ 1.43
SMC4-211ENST00000469858 RRS1Q15050 365 aaKnown RBP23.96■■□□□ 1.43
SMC4-211ENST00000469858 ZNF521Q96K83 1311 aa23.95■■□□□ 1.42
SMC4-211ENST00000469858 IQSEC2Q5JU85 1478 aa23.95■■□□□ 1.42
SMC4-211ENST00000469858 ESCO1Q5FWF5 840 aa23.94■■□□□ 1.42
SMC4-211ENST00000469858 TMEM94Q12767 1356 aa23.92■■□□□ 1.42
SMC4-211ENST00000469858 USP31Q70CQ4 1352 aa23.91■■□□□ 1.42
SMC4-211ENST00000469858 TCP11L2Q8N4U5 519 aa23.91■■□□□ 1.42
SMC4-211ENST00000469858 NGEFQ8N5V2 710 aa23.91■■□□□ 1.42
SMC4-211ENST00000469858 C19orf44Q9H6X5 657 aa23.91■■□□□ 1.42
SMC4-211ENST00000469858 SOX12O15370 315 aa23.9■■□□□ 1.42
SMC4-211ENST00000469858 PAK3O75914 559 aaPredicted RBP23.9■■□□□ 1.42
SMC4-211ENST00000469858 GOLGA2Q08379 1002 aa23.9■■□□□ 1.42
SMC4-211ENST00000469858 IRX6P78412 446 aaPredicted RBP23.89■■□□□ 1.42
SMC4-211ENST00000469858 RRP7AQ9Y3A4 280 aaKnown RBP23.89■■□□□ 1.42
SMC4-211ENST00000469858 MARF1Q9Y4F3 1742 aaKnown RBP23.89■■□□□ 1.42
SMC4-211ENST00000469858 NEUROD2Q15784 382 aa23.89■■□□□ 1.41
SMC4-211ENST00000469858 ORAI2Q96SN7 254 aa23.88■■□□□ 1.41
SMC4-211ENST00000469858 NLRP6P59044 892 aa23.87■■□□□ 1.41
SMC4-211ENST00000469858 USP54Q70EL1 1684 aa23.87■■□□□ 1.41
SMC4-211ENST00000469858 PEAK1Q9H792 1746 aa23.87■■□□□ 1.41
SMC4-211ENST00000469858 PSME1Q06323 249 aa23.86■■□□□ 1.41
SMC4-211ENST00000469858 NUTM2GQ5VZR2 741 aa23.86■■□□□ 1.41
SMC4-211ENST00000469858 ABTB2Q8N961 1025 aa23.86■■□□□ 1.41
SMC4-211ENST00000469858 LRRC7Q96NW7 1537 aa23.86■■□□□ 1.41
SMC4-211ENST00000469858 NCOA3Q9Y6Q9 1424 aa23.86■■□□□ 1.41
SMC4-211ENST00000469858 PLEKHF1Q96S99 279 aa23.85■■□□□ 1.41
SMC4-211ENST00000469858 C1orf167Q5SNV9 1468 aa23.85■■□□□ 1.41
SMC4-211ENST00000469858 IL13P35225 146 aa23.85■■□□□ 1.41
SMC4-211ENST00000469858 KIF1AQ12756 1690 aa23.84■■□□□ 1.41
SMC4-211ENST00000469858 MAPK8IP3Q9UPT6 1336 aa23.84■■□□□ 1.41
SMC4-211ENST00000469858 ATF3P18847 181 aa23.84■■□□□ 1.41
SMC4-211ENST00000469858 WWC1Q8IX03 1113 aa23.84■■□□□ 1.41
SMC4-211ENST00000469858 XIRP1Q702N8 1843 aaKnown RBP23.84■■□□□ 1.41
SMC4-211ENST00000469858 RCAN3Q9UKA8 241 aa23.83■■□□□ 1.41
SMC4-211ENST00000469858 DCCP43146 1447 aa23.83■■□□□ 1.41
SMC4-211ENST00000469858 SLFN5Q08AF3 891 aa23.83■■□□□ 1.41
SMC4-211ENST00000469858 DUSP27Q5VZP5 1158 aa23.83■■□□□ 1.41
SMC4-211ENST00000469858 FOXO3O43524 673 aa23.82■■□□□ 1.4
SMC4-211ENST00000469858 PNNQ9H307 717 aaKnown RBP23.82■■□□□ 1.4
SMC4-211ENST00000469858 DMRT2Q9Y5R5 561 aa23.82■■□□□ 1.4
SMC4-211ENST00000469858 MAP3K19Q56UN5 1328 aa23.81■■□□□ 1.4
SMC4-211ENST00000469858 MST1RQ04912 1400 aa23.81■■□□□ 1.4
SMC4-211ENST00000469858 FCHSD2O94868 740 aa23.81■■□□□ 1.4
SMC4-211ENST00000469858 SPINK5Q9NQ38 1064 aaPredicted RBP23.81■■□□□ 1.4
SMC4-211ENST00000469858 RNF123Q5XPI4 1314 aa23.8■■□□□ 1.4
SMC4-211ENST00000469858 HMOX1P09601 288 aa23.8■■□□□ 1.4
SMC4-211ENST00000469858 RSPH6AQ9H0K4 717 aa23.8■■□□□ 1.4
SMC4-211ENST00000469858 E9PSI1 815 aa23.79■■□□□ 1.4
SMC4-211ENST00000469858 PRKAR2BP31323 418 aa23.79■■□□□ 1.4
SMC4-211ENST00000469858 XPCQ01831 940 aaPredicted RBP23.79■■□□□ 1.4
SMC4-211ENST00000469858 PHF23Q9BUL5 403 aaPredicted RBP23.79■■□□□ 1.4
SMC4-211ENST00000469858 MSH6P52701 1360 aa23.78■■□□□ 1.4
SMC4-211ENST00000469858 CCDC27Q2M243 656 aa23.78■■□□□ 1.4
SMC4-211ENST00000469858 ZNF335Q9H4Z2 1342 aaPredicted RBP23.78■■□□□ 1.4
SMC4-211ENST00000469858 EIF4A2Q14240 407 aaKnown RBP23.78■■□□□ 1.4
SMC4-211ENST00000469858 HSP90AB2PQ58FF8 381 aa23.78■■□□□ 1.4
SMC4-211ENST00000469858 SBNO1A3KN83 1393 aa23.77■■□□□ 1.4
SMC4-211ENST00000469858 TMPOP42166 694 aaKnown RBP23.77■■□□□ 1.4
SMC4-211ENST00000469858 TRMT2AQ8IZ69 625 aaKnown RBP23.77■■□□□ 1.4
SMC4-211ENST00000469858 TRPM3Q9HCF6 1732 aaPredicted RBP23.77■■□□□ 1.4
SMC4-211ENST00000469858 FLT4P35916 1363 aa23.77■■□□□ 1.39
SMC4-211ENST00000469858 NCBP3Q53F19 620 aaKnown RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms