RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 PDIA4P13667 645 aaKnown RBP11.18□□□□□ -0.62
BRCA1-208ENST00000468300 POLR3AO14802 1390 aaPredicted RBP11.17□□□□□ -0.62
BRCA1-208ENST00000468300 NPM2Q86SE8 214 aaKnown RBP11.17□□□□□ -0.62
BRCA1-208ENST00000468300 BLMP54132 1417 aaPredicted RBP11.16□□□□□ -0.62
BRCA1-208ENST00000468300 NUTM2FA1L443 756 aa11.16□□□□□ -0.62
BRCA1-208ENST00000468300 COL3A1P02461 1466 aaPredicted RBP11.16□□□□□ -0.62
BRCA1-208ENST00000468300 CENPBP07199 599 aaPredicted RBP11.15□□□□□ -0.62
BRCA1-208ENST00000468300 HDGFL2Q7Z4V5 671 aaPredicted RBP11.15□□□□□ -0.62
BRCA1-208ENST00000468300 USP6P35125 1406 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 ACEP12821 1306 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 PIK3C2AO00443 1686 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 USP54Q70EL1 1684 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 C14orf37Q86TY3 774 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 GGNBP2Q9H3C7 697 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 INSRP06213 1382 aa11.15□□□□□ -0.62
BRCA1-208ENST00000468300 MAP2P11137 1827 aaKnown RBP11.14□□□□□ -0.63
BRCA1-208ENST00000468300 UBE2Q2Q8WVN8 375 aa11.14□□□□□ -0.63
BRCA1-208ENST00000468300 MORC1Q86VD1 984 aa11.14□□□□□ -0.63
BRCA1-208ENST00000468300 ZRANB1Q9UGI0 708 aa11.14□□□□□ -0.63
BRCA1-208ENST00000468300 HNRNPUQ00839 825 aaKnown RBP eCLIP11.13□□□□□ -0.63
BRCA1-208ENST00000468300 NME9Q86XW9 330 aa11.13□□□□□ -0.63
BRCA1-208ENST00000468300 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.12□□□□□ -0.63
BRCA1-208ENST00000468300 OVOS2A0A0J9YW53 1432 aa11.12□□□□□ -0.63
BRCA1-208ENST00000468300 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-208ENST00000468300 OVOS2Q6IE36 1432 aa11.12□□□□□ -0.63
BRCA1-208ENST00000468300 ZNF692Q9BU19 519 aaPredicted RBP11.12□□□□□ -0.63
BRCA1-208ENST00000468300 ADAMTS8Q9UP79 889 aa11.12□□□□□ -0.63
BRCA1-208ENST00000468300 SMG6Q86US8 1419 aaKnown RBP11.12□□□□□ -0.63
BRCA1-208ENST00000468300 SCAF1Q9H7N4 1312 aaKnown RBP11.11□□□□□ -0.63
BRCA1-208ENST00000468300 PMFBP1Q8TBY8 1022 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 PNPLA6Q8IY17 1366 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 ZBED9Q6R2W3 1325 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 TTC21BQ7Z4L5 1316 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 FBLN1P23142 703 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 MTHFSP49914 203 aa11.11□□□□□ -0.63
BRCA1-208ENST00000468300 NCOA3Q9Y6Q9 1424 aa11.1□□□□□ -0.63
BRCA1-208ENST00000468300 PEAK1Q9H792 1746 aa11.1□□□□□ -0.63
BRCA1-208ENST00000468300 TRPM3Q9HCF6 1732 aaPredicted RBP11.1□□□□□ -0.63
BRCA1-208ENST00000468300 LRRC7Q96NW7 1537 aa11.1□□□□□ -0.63
BRCA1-208ENST00000468300 TMEM94Q12767 1356 aa11.1□□□□□ -0.63
BRCA1-208ENST00000468300 PROSER2Q86WR7 435 aaPredicted RBP11.09□□□□□ -0.63
BRCA1-208ENST00000468300 MST1RQ04912 1400 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 SENP3-EIF4A1A0A087X0R7 540 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 AATKQ6ZMQ8 1374 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 C1orf167Q5SNV9 1468 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 USP31Q70CQ4 1352 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 DCCP43146 1447 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 HAP1P54257 671 aaPredicted RBP11.08□□□□□ -0.64
BRCA1-208ENST00000468300 POLKQ9UBT6 870 aa11.08□□□□□ -0.64
BRCA1-208ENST00000468300 KIF1AQ12756 1690 aa11.07□□□□□ -0.64
BRCA1-208ENST00000468300 PKNOX2Q96KN3 472 aa11.07□□□□□ -0.64
BRCA1-208ENST00000468300 ZNF335Q9H4Z2 1342 aaPredicted RBP11.07□□□□□ -0.64
BRCA1-208ENST00000468300 PDE4CQ08493 712 aa11.07□□□□□ -0.64
BRCA1-208ENST00000468300 C19orf44Q9H6X5 657 aa11.06□□□□□ -0.64
BRCA1-208ENST00000468300 IQSEC2Q5JU85 1478 aa11.06□□□□□ -0.64
BRCA1-208ENST00000468300 ORAI2Q96SN7 254 aa11.06□□□□□ -0.64
BRCA1-208ENST00000468300 PHF8Q9UPP1 1060 aa11.05□□□□□ -0.64
BRCA1-208ENST00000468300 TTC21AQ8NDW8 1320 aa11.05□□□□□ -0.64
BRCA1-208ENST00000468300 ALS2Q96Q42 1657 aa11.05□□□□□ -0.64
BRCA1-208ENST00000468300 CDK12Q9NYV4 1490 aaPredicted RBP11.05□□□□□ -0.64
BRCA1-208ENST00000468300 RGPD1P0DJD0 1748 aa11.04□□□□□ -0.64
BRCA1-208ENST00000468300 NGDNQ8NEJ9 315 aaKnown RBP11.04□□□□□ -0.64
BRCA1-208ENST00000468300 EMILIN1Q9Y6C2 1016 aa11.04□□□□□ -0.64
BRCA1-208ENST00000468300 ZNF521Q96K83 1311 aa11.04□□□□□ -0.64
BRCA1-208ENST00000468300 ESCO1Q5FWF5 840 aa11.03□□□□□ -0.64
BRCA1-208ENST00000468300 COG3Q96JB2 828 aa11.03□□□□□ -0.64
BRCA1-208ENST00000468300 NFAT5O94916 1531 aa11.03□□□□□ -0.64
BRCA1-208ENST00000468300 ANO8Q9HCE9 1232 aaPredicted RBP11.03□□□□□ -0.64
BRCA1-208ENST00000468300 CRYBG1Q9Y4K1 1723 aa11.02□□□□□ -0.65
BRCA1-208ENST00000468300 RRS1Q15050 365 aaKnown RBP11.02□□□□□ -0.65
BRCA1-208ENST00000468300 WDR43Q15061 677 aaKnown RBP eCLIP11.02□□□□□ -0.65
BRCA1-208ENST00000468300 CCDC146Q8IYE0 955 aa11.02□□□□□ -0.65
BRCA1-208ENST00000468300 PLEKHF1Q96S99 279 aa11.02□□□□□ -0.65
BRCA1-208ENST00000468300 LTN1O94822 1766 aa11.02□□□□□ -0.65
BRCA1-208ENST00000468300 LTBP4Q8N2S1 1624 aa11.01□□□□□ -0.65
BRCA1-208ENST00000468300 PHRF1Q9P1Y6 1649 aaKnown RBP11.01□□□□□ -0.65
BRCA1-208ENST00000468300 SLIT3O75094 1523 aa11□□□□□ -0.65
BRCA1-208ENST00000468300 IL13P35225 146 aa11□□□□□ -0.65
BRCA1-208ENST00000468300 GTF3C3Q9Y5Q9 886 aa11□□□□□ -0.65
BRCA1-208ENST00000468300 PXDNQ92626 1479 aa11□□□□□ -0.65
BRCA1-208ENST00000468300 MED1Q15648 1581 aaPredicted RBP10.99□□□□□ -0.65
BRCA1-208ENST00000468300 FOXO3O43524 673 aa10.99□□□□□ -0.65
BRCA1-208ENST00000468300 CFAP53Q96M91 514 aa10.99□□□□□ -0.65
BRCA1-208ENST00000468300 PHF23Q9BUL5 403 aaPredicted RBP10.98□□□□□ -0.65
BRCA1-208ENST00000468300 MSH6P52701 1360 aa10.98□□□□□ -0.65
BRCA1-208ENST00000468300 APAF1O14727 1248 aa10.98□□□□□ -0.65
BRCA1-208ENST00000468300 DDX17Q92841 729 aaKnown RBP10.98□□□□□ -0.65
BRCA1-208ENST00000468300 CDCA7LQ96GN5 454 aa10.98□□□□□ -0.65
BRCA1-208ENST00000468300 MAP3K19Q56UN5 1328 aa10.98□□□□□ -0.65
BRCA1-208ENST00000468300 NUTM2GQ5VZR2 741 aa10.97□□□□□ -0.65
BRCA1-208ENST00000468300 SALL2Q9Y467 1007 aaPredicted RBP10.97□□□□□ -0.65
BRCA1-208ENST00000468300 DIAPH1O60610 1272 aaKnown RBP10.97□□□□□ -0.65
BRCA1-208ENST00000468300 XPCQ01831 940 aaPredicted RBP10.97□□□□□ -0.65
BRCA1-208ENST00000468300 CADPS2Q86UW7 1296 aa10.97□□□□□ -0.65
BRCA1-208ENST00000468300 DMRT2Q9Y5R5 561 aa10.97□□□□□ -0.65
BRCA1-208ENST00000468300 ATF3P18847 181 aa10.97□□□□□ -0.65
BRCA1-208ENST00000468300 ABTB2Q8N961 1025 aa10.97□□□□□ -0.65
BRCA1-208ENST00000468300 NLRP6P59044 892 aa10.96□□□□□ -0.65
BRCA1-208ENST00000468300 PSME1Q06323 249 aa10.96□□□□□ -0.65
BRCA1-208ENST00000468300 DHX37Q8IY37 1157 aaKnown RBP10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms