RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.38□□□□□ -0.91
SCAF4-204ENST00000467731 DDX17Q92841 729 aaKnown RBP9.38□□□□□ -0.91
SCAF4-204ENST00000467731 CGNL1Q0VF96 1302 aa9.37□□□□□ -0.91
SCAF4-204ENST00000467731 XPCQ01831 940 aaPredicted RBP9.37□□□□□ -0.91
SCAF4-204ENST00000467731 PSME1Q06323 249 aa9.37□□□□□ -0.91
SCAF4-204ENST00000467731 CC2D1BQ5T0F9 858 aaKnown RBP9.37□□□□□ -0.91
SCAF4-204ENST00000467731 TOM1O60784 492 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 SSH2Q76I76 1423 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 TRPM3Q9HCF6 1732 aaPredicted RBP9.36□□□□□ -0.91
SCAF4-204ENST00000467731 NHSL1Q5SYE7 1610 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 ANKRD26Q9UPS8 1709 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 NPHP3Q7Z494 1330 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 TTC21BQ7Z4L5 1316 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 UBAP1LF5GYI3 381 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 PIK3C2AO00443 1686 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 FYB1O15117 783 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 ANP32CO43423 234 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PAK3O75914 559 aaPredicted RBP9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PIP4K2BP78356 416 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 KRT28Q7Z3Y7 464 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 GGNBP2Q9H3C7 697 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PRKRIP1Q9H875 184 aaPredicted RBP9.35□□□□□ -0.91
SCAF4-204ENST00000467731 NPC1L1Q9UHC9 1359 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PXDNQ92626 1479 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 NME9Q86XW9 330 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 TTC21AQ8NDW8 1320 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 BRD4O60885 1362 aaPredicted RBP9.33□□□□□ -0.92
SCAF4-204ENST00000467731 NSD2O96028 1365 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ALS2Q96Q42 1657 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ZRANB1Q9UGI0 708 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 MARF1Q9Y4F3 1742 aaKnown RBP9.33□□□□□ -0.92
SCAF4-204ENST00000467731 PARD3Q8TEW0 1356 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 MIER1Q8N108 512 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ABTB2Q8N961 1025 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 SOS2Q07890 1332 aaPredicted RBP9.32□□□□□ -0.92
SCAF4-204ENST00000467731 AHDC1Q5TGY3 1603 aaPredicted RBP9.32□□□□□ -0.92
SCAF4-204ENST00000467731 NUTM2GQ5VZR2 741 aa9.32□□□□□ -0.92
SCAF4-204ENST00000467731 ANP32EQ9BTT0 268 aa9.32□□□□□ -0.92
SCAF4-204ENST00000467731 OVOS2A0A0J9YW53 1432 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 OVOS2Q6IE36 1432 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 USP54Q70EL1 1684 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 PHLPP1O60346 1717 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 LMOD2Q6P5Q4 547 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 MORC1Q86VD1 984 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 TNS3Q68CZ2 1445 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 MAP2P11137 1827 aaKnown RBP9.31□□□□□ -0.92
SCAF4-204ENST00000467731 TNNT2P45379 298 aaPredicted RBP9.31□□□□□ -0.92
SCAF4-204ENST00000467731 NLRP6P59044 892 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 RALBP1Q15311 655 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 COG3Q96JB2 828 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 SBNO1A3KN83 1393 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 SPATA31A3Q5VYP0 1347 aa9.3□□□□□ -0.92
SCAF4-204ENST00000467731 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
SCAF4-204ENST00000467731 COL16A1Q07092 1604 aaPredicted RBP9.29□□□□□ -0.92
SCAF4-204ENST00000467731 FBLN1P23142 703 aa9.29□□□□□ -0.92
SCAF4-204ENST00000467731 MYBBP1AQ9BQG0 1328 aaKnown RBP9.29□□□□□ -0.92
SCAF4-204ENST00000467731 SOX12O15370 315 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 PLEKHG5O94827 1062 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 NLRP13Q86W25 1043 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 ARHGEF10O15013 1369 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 CRYBG1Q9Y4K1 1723 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 PPP2R1AP30153 589 aa9.27□□□□□ -0.92
SCAF4-204ENST00000467731 MED1Q15648 1581 aaPredicted RBP9.27□□□□□ -0.92
SCAF4-204ENST00000467731 PHRF1Q9P1Y6 1649 aaKnown RBP9.27□□□□□ -0.93
SCAF4-204ENST00000467731 LRRC59Q96AG4 307 aaKnown RBP9.27□□□□□ -0.93
SCAF4-204ENST00000467731 GTF3C3Q9Y5Q9 886 aa9.27□□□□□ -0.93
SCAF4-204ENST00000467731 LTN1O94822 1766 aa9.27□□□□□ -0.93
SCAF4-204ENST00000467731 USP19O94966 1318 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 SLIT3O75094 1523 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 ABCA3Q99758 1704 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 RRS1Q15050 365 aaKnown RBP9.26□□□□□ -0.93
SCAF4-204ENST00000467731 CCDC184Q52MB2 194 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 CABLES1Q8TDN4 633 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 AATKQ6ZMQ8 1374 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 NFAT5O94916 1531 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 GCP02774 474 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 POLKQ9UBT6 870 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 EMILIN1Q9Y6C2 1016 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 MTHFSP49914 203 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 COL22A1Q8NFW1 1626 aaPredicted RBP9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PNPLA6Q8IY17 1366 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PEAK1Q9H792 1746 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 CCER2I3L3R5 266 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 KCNH5Q8NCM2 988 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PPM1GO15355 546 aaPredicted RBP9.24□□□□□ -0.93
SCAF4-204ENST00000467731 SMG6Q86US8 1419 aaKnown RBP9.23□□□□□ -0.93
SCAF4-204ENST00000467731 MAP3K19Q56UN5 1328 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 SHPRHQ149N8 1683 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 MRS2Q9HD23 443 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 HSPA1LP34931 641 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 ZC3H6P61129 1189 aaKnown RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 CDK12Q9NYV4 1490 aaPredicted RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 RGPD5Q99666 1765 aa9.22□□□□□ -0.93
SCAF4-204ENST00000467731 ZBTB7CA1YPR0 619 aa9.21□□□□□ -0.93
SCAF4-204ENST00000467731 ARHGEF25Q86VW2 580 aa9.21□□□□□ -0.94
SCAF4-204ENST00000467731 AMPHP49418 695 aa9.21□□□□□ -0.94
SCAF4-204ENST00000467731 FLT4P35916 1363 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 KIAA0232Q92628 1395 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 JCADQ9P266 1359 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms