RNA–Protein interactions for RNA: ENST00000462258.1

SF3A3-204, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 527 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-204ENST00000462258 GLI3P10071 1580 aa14.58□□□□□ -0.08
SF3A3-204ENST00000462258 PPIP5K1Q6PFW1 1433 aa14.58□□□□□ -0.08
SF3A3-204ENST00000462258 PLEKHG5O94827 1062 aa14.57□□□□□ -0.08
SF3A3-204ENST00000462258 CABLES1Q8TDN4 633 aa14.57□□□□□ -0.08
SF3A3-204ENST00000462258 NRKQ7Z2Y5 1582 aa14.56□□□□□ -0.08
SF3A3-204ENST00000462258 SRPK2P78362 688 aaKnown RBP14.56□□□□□ -0.08
SF3A3-204ENST00000462258 AKAP12Q02952 1782 aa14.55□□□□□ -0.08
SF3A3-204ENST00000462258 NBPF8Q3BBV2 869 aa14.55□□□□□ -0.08
SF3A3-204ENST00000462258 CCDC61Q9Y6R9 512 aa14.55□□□□□ -0.08
SF3A3-204ENST00000462258 PAK3O75914 559 aaPredicted RBP14.54□□□□□ -0.08
SF3A3-204ENST00000462258 CABP2Q9NPB3 220 aa14.54□□□□□ -0.08
SF3A3-204ENST00000462258 ACEP12821 1306 aa14.54□□□□□ -0.08
SF3A3-204ENST00000462258 UNC5CLQ8IV45 518 aa14.53□□□□□ -0.08
SF3A3-204ENST00000462258 EVC2Q86UK5 1308 aa14.52□□□□□ -0.08
SF3A3-204ENST00000462258 PLEKHG3A1L390 1219 aa14.52□□□□□ -0.09
SF3A3-204ENST00000462258 PIK3C2AO00443 1686 aa14.52□□□□□ -0.09
SF3A3-204ENST00000462258 SBNO2Q9Y2G9 1366 aa14.51□□□□□ -0.09
SF3A3-204ENST00000462258 BRWD3Q6RI45 1802 aa14.51□□□□□ -0.09
SF3A3-204ENST00000462258 MON2Q7Z3U7 1717 aa14.51□□□□□ -0.09
SF3A3-204ENST00000462258 GJD4Q96KN9 370 aaPredicted RBP14.5□□□□□ -0.09
SF3A3-204ENST00000462258 CARD11Q9BXL7 1154 aa14.5□□□□□ -0.09
SF3A3-204ENST00000462258 USP6P35125 1406 aa14.49□□□□□ -0.09
SF3A3-204ENST00000462258 ATAD2Q6PL18 1390 aa14.49□□□□□ -0.09
SF3A3-204ENST00000462258 UPF1Q92900 1129 aaKnown RBP eCLIP14.49□□□□□ -0.09
SF3A3-204ENST00000462258 EP400Q96L91 3159 aa14.49□□□□□ -0.09
SF3A3-204ENST00000462258 BRD4O60885 1362 aaPredicted RBP14.48□□□□□ -0.09
SF3A3-204ENST00000462258 LMO7Q8WWI1 1683 aa14.48□□□□□ -0.09
SF3A3-204ENST00000462258 FAM83GA6ND36 823 aa14.47□□□□□ -0.09
SF3A3-204ENST00000462258 VPS72Q15906 364 aa14.47□□□□□ -0.09
SF3A3-204ENST00000462258 KIAA0232Q92628 1395 aa14.47□□□□□ -0.09
SF3A3-204ENST00000462258 SLIT3O75094 1523 aa14.46□□□□□ -0.09
SF3A3-204ENST00000462258 NUTM2GQ5VZR2 741 aa14.46□□□□□ -0.09
SF3A3-204ENST00000462258 PRDM11Q9NQV5 511 aa14.46□□□□□ -0.09
SF3A3-204ENST00000462258 CABP1Q9NZU7 370 aa14.46□□□□□ -0.09
SF3A3-204ENST00000462258 USP19O94966 1318 aa14.45□□□□□ -0.1
SF3A3-204ENST00000462258 SSH2Q76I76 1423 aa14.45□□□□□ -0.1
SF3A3-204ENST00000462258 ABTB2Q8N961 1025 aa14.45□□□□□ -0.1
SF3A3-204ENST00000462258 BTG4Q9NY30 223 aa14.45□□□□□ -0.1
SF3A3-204ENST00000462258 CCDC9Q9Y3X0 531 aaKnown RBP14.45□□□□□ -0.1
SF3A3-204ENST00000462258 THSD7AQ9UPZ6 1657 aa14.45□□□□□ -0.1
SF3A3-204ENST00000462258 USP54Q70EL1 1684 aa14.44□□□□□ -0.1
SF3A3-204ENST00000462258 CPSF1Q10570 1443 aaKnown RBP14.42□□□□□ -0.1
SF3A3-204ENST00000462258 CPDO75976 1380 aa14.42□□□□□ -0.1
SF3A3-204ENST00000462258 ZC3H6P61129 1189 aaKnown RBP14.41□□□□□ -0.1
SF3A3-204ENST00000462258 CHRNA2Q15822 529 aa14.41□□□□□ -0.1
SF3A3-204ENST00000462258 CLSPNQ9HAW4 1339 aa14.41□□□□□ -0.1
SF3A3-204ENST00000462258 CAMTA1Q9Y6Y1 1673 aa14.4□□□□□ -0.1
SF3A3-204ENST00000462258 CD163L1Q9NR16 1453 aa14.4□□□□□ -0.1
SF3A3-204ENST00000462258 KTN1Q86UP2 1357 aaKnown RBP14.4□□□□□ -0.1
SF3A3-204ENST00000462258 NLRP13Q86W25 1043 aa14.4□□□□□ -0.1
SF3A3-204ENST00000462258 WNK3Q9BYP7 1800 aa14.39□□□□□ -0.11
SF3A3-204ENST00000462258 SEPT12Q8IYM1 358 aa14.39□□□□□ -0.11
SF3A3-204ENST00000462258 PCGF6Q9BYE7 350 aa14.39□□□□□ -0.11
SF3A3-204ENST00000462258 SPATA31A5Q5VU36 1347 aa14.39□□□□□ -0.11
SF3A3-204ENST00000462258 SPATA31A7Q8IWB4 1347 aa14.39□□□□□ -0.11
SF3A3-204ENST00000462258 COL5A2P05997 1499 aaPredicted RBP14.38□□□□□ -0.11
SF3A3-204ENST00000462258 USP47Q96K76 1375 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 COL18A1P39060 1754 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 NFAT5O94916 1531 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 A0A0G2JS52 829 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 MYT1Q01538 1121 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 FAM98CQ17RN3 349 aaKnown RBP14.38□□□□□ -0.11
SF3A3-204ENST00000462258 TTC21BQ7Z4L5 1316 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 TTC21AQ8NDW8 1320 aa14.38□□□□□ -0.11
SF3A3-204ENST00000462258 GCP02774 474 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 NLRP6P59044 892 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 ZNF692Q9BU19 519 aaPredicted RBP14.37□□□□□ -0.11
SF3A3-204ENST00000462258 STRN4Q9NRL3 753 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 RGPD1P0DJD0 1748 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 LTN1O94822 1766 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 RGPD5Q99666 1765 aa14.37□□□□□ -0.11
SF3A3-204ENST00000462258 ONECUT3O60422 494 aaPredicted RBP14.36□□□□□ -0.11
SF3A3-204ENST00000462258 ABCC6O95255 1503 aa14.36□□□□□ -0.11
SF3A3-204ENST00000462258 A0A1W2PP64 1363 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 NINLQ9Y2I6 1382 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 PARP4Q9UKK3 1724 aaKnown RBP14.35□□□□□ -0.11
SF3A3-204ENST00000462258 BLMP54132 1417 aaPredicted RBP14.35□□□□□ -0.11
SF3A3-204ENST00000462258 EDC4Q6P2E9 1401 aaKnown RBP14.35□□□□□ -0.11
SF3A3-204ENST00000462258 ST20-MTHFSA0A0A6YYL1 179 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 TMC1Q8TDI8 760 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 TESK2Q96S53 571 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 SPATA31A1Q5TZJ5 1347 aa14.35□□□□□ -0.11
SF3A3-204ENST00000462258 MYOM1P52179 1685 aa14.34□□□□□ -0.11
SF3A3-204ENST00000462258 KRT27Q7Z3Y8 459 aa14.34□□□□□ -0.11
SF3A3-204ENST00000462258 TNS1Q9HBL0 1735 aaKnown RBP14.34□□□□□ -0.11
SF3A3-204ENST00000462258 ZBTB7CA1YPR0 619 aa14.33□□□□□ -0.12
SF3A3-204ENST00000462258 HDGFL2Q7Z4V5 671 aaPredicted RBP14.33□□□□□ -0.12
SF3A3-204ENST00000462258 PUS7Q96PZ0 661 aaKnown RBP14.33□□□□□ -0.12
SF3A3-204ENST00000462258 TIMELESSQ9UNS1 1208 aa14.33□□□□□ -0.12
SF3A3-204ENST00000462258 LRRC37A3O60309 1634 aa14.33□□□□□ -0.12
SF3A3-204ENST00000462258 AATKQ6ZMQ8 1374 aa14.33□□□□□ -0.12
SF3A3-204ENST00000462258 USP31Q70CQ4 1352 aa14.32□□□□□ -0.12
SF3A3-204ENST00000462258 CRB1P82279 1406 aa14.32□□□□□ -0.12
SF3A3-204ENST00000462258 SLC24A1O60721 1099 aa14.31□□□□□ -0.12
SF3A3-204ENST00000462258 EVA1CP58658 441 aa14.31□□□□□ -0.12
SF3A3-204ENST00000462258 LARP1Q6PKG0 1096 aaKnown RBP14.31□□□□□ -0.12
SF3A3-204ENST00000462258 CCDC125Q86Z20 511 aa14.31□□□□□ -0.12
SF3A3-204ENST00000462258 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.31□□□□□ -0.12
SF3A3-204ENST00000462258 KCNH5Q8NCM2 988 aa14.31□□□□□ -0.12
SF3A3-204ENST00000462258 SLC12A5Q9H2X9 1139 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms