RNA–Protein interactions for RNA: ENST00000460366.5

VPS45-204, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 636 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-204	ENST00000460366	ZRANB1	Q9UGI0	708 aa		13.94	□□□□□ -0.18
VPS45-204	ENST00000460366	FBXO3	Q9UK99	471 aa		13.94	□□□□□ -0.18
VPS45-204	ENST00000460366	ESCO1	Q5FWF5	840 aa		13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	NUDT16	Q96DE0	195 aa	Known RBP	13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	CCDC61	Q9Y6R9	512 aa		13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	QRICH2	Q9H0J4	1663 aa		13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	TULP4	Q9NRJ4	1543 aa		13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	FMN2	Q9NZ56	1722 aa		13.93	□□□□□ -0.18
VPS45-204	ENST00000460366	NUTM2F	A1L443	756 aa		13.92	□□□□□ -0.18
VPS45-204	ENST00000460366	SRPK2	P78362	688 aa	Known RBP	13.92	□□□□□ -0.18
VPS45-204	ENST00000460366	ORAI2	Q96SN7	254 aa		13.92	□□□□□ -0.18
VPS45-204	ENST00000460366	PRR36	Q9H6K5	1346 aa		13.91	□□□□□ -0.18
VPS45-204	ENST00000460366	HSPA5	P11021	654 aa	Known RBP	13.91	□□□□□ -0.18
VPS45-204	ENST00000460366	TMF1	P82094	1093 aa		13.91	□□□□□ -0.18
VPS45-204	ENST00000460366	PHF8	Q9UPP1	1060 aa		13.91	□□□□□ -0.18
VPS45-204	ENST00000460366	PLEKHG3	A1L390	1219 aa		13.9	□□□□□ -0.18
VPS45-204	ENST00000460366	PLEKHG5	O94827	1062 aa		13.9	□□□□□ -0.18
VPS45-204	ENST00000460366	CDCA8	Q53HL2	280 aa		13.9	□□□□□ -0.18
VPS45-204	ENST00000460366	CABP2	Q9NPB3	220 aa		13.9	□□□□□ -0.18
VPS45-204	ENST00000460366	ATAD2	Q6PL18	1390 aa		13.9	□□□□□ -0.18
VPS45-204	ENST00000460366	ZNF579	Q8NAF0	562 aa	Known RBP	13.89	□□□□□ -0.19
VPS45-204	ENST00000460366	NPHP3	Q7Z494	1330 aa		13.89	□□□□□ -0.19
VPS45-204	ENST00000460366	ROBO1	Q9Y6N7	1651 aa		13.88	□□□□□ -0.19
VPS45-204	ENST00000460366	ATP7B	P35670	1465 aa		13.88	□□□□□ -0.19
VPS45-204	ENST00000460366	HSPA1L	P34931	641 aa		13.87	□□□□□ -0.19
VPS45-204	ENST00000460366	SOS2	Q07890	1332 aa	Predicted RBP	13.87	□□□□□ -0.19
VPS45-204	ENST00000460366	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.86	□□□□□ -0.19
VPS45-204	ENST00000460366	USP32	Q8NFA0	1604 aa		13.86	□□□□□ -0.19
VPS45-204	ENST00000460366	FOXO3	O43524	673 aa		13.86	□□□□□ -0.19
VPS45-204	ENST00000460366	NGDN	Q8NEJ9	315 aa	Known RBP	13.85	□□□□□ -0.19
VPS45-204	ENST00000460366	CABP1	Q9NZU7	370 aa		13.85	□□□□□ -0.19
VPS45-204	ENST00000460366	KIF1A	Q12756	1690 aa		13.85	□□□□□ -0.19
VPS45-204	ENST00000460366	POLR3A	O14802	1390 aa	Predicted RBP	13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	NINL	Q9Y2I6	1382 aa		13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	PAK3	O75914	559 aa	Predicted RBP	13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	PSME1	Q06323	249 aa		13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	PMFBP1	Q8TBY8	1022 aa		13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	LRRC59	Q96AG4	307 aa	Known RBP	13.84	□□□□□ -0.19
VPS45-204	ENST00000460366	PPIP5K1	Q6PFW1	1433 aa		13.83	□□□□□ -0.2
VPS45-204	ENST00000460366	VASP	P50552	380 aa	Predicted RBP	13.83	□□□□□ -0.2
VPS45-204	ENST00000460366	KRT28	Q7Z3Y7	464 aa		13.83	□□□□□ -0.2
VPS45-204	ENST00000460366	ACE	P12821	1306 aa		13.83	□□□□□ -0.2
VPS45-204	ENST00000460366	BRD4	O60885	1362 aa	Predicted RBP	13.83	□□□□□ -0.2
VPS45-204	ENST00000460366	RGPD8	O14715	1765 aa	Predicted RBP	13.82	□□□□□ -0.2
VPS45-204	ENST00000460366	DDX17	Q92841	729 aa	Known RBP	13.82	□□□□□ -0.2
VPS45-204	ENST00000460366	PHF12	Q96QT6	1004 aa		13.82	□□□□□ -0.2
VPS45-204	ENST00000460366	NHSL1	Q5SYE7	1610 aa		13.82	□□□□□ -0.2
VPS45-204	ENST00000460366	SBNO1	A3KN83	1393 aa		13.82	□□□□□ -0.2
VPS45-204	ENST00000460366	ITSN1	Q15811	1721 aa		13.81	□□□□□ -0.2
VPS45-204	ENST00000460366	RASEF	Q8IZ41	740 aa		13.81	□□□□□ -0.2
VPS45-204	ENST00000460366	TOPAZ1	Q8N9V7	1692 aa		13.81	□□□□□ -0.2
VPS45-204	ENST00000460366	PXDN	Q92626	1479 aa		13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	SLC12A5	Q9H2X9	1139 aa		13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	TERF2IP	Q9NYB0	399 aa		13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	JCAD	Q9P266	1359 aa		13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	CPSF1	Q10570	1443 aa	Known RBP	13.8	□□□□□ -0.2
VPS45-204	ENST00000460366	PHLPP1	O60346	1717 aa		13.79	□□□□□ -0.2
VPS45-204	ENST00000460366	TMC1	Q8TDI8	760 aa		13.79	□□□□□ -0.2
VPS45-204	ENST00000460366	SPATA31A3	Q5VYP0	1347 aa		13.79	□□□□□ -0.2
VPS45-204	ENST00000460366	COL16A1	Q07092	1604 aa	Predicted RBP	13.79	□□□□□ -0.2
VPS45-204	ENST00000460366	C11orf95	C9JLR9	678 aa	Predicted RBP	13.78	□□□□□ -0.2
VPS45-204	ENST00000460366	XPC	Q01831	940 aa	Predicted RBP	13.78	□□□□□ -0.2
VPS45-204	ENST00000460366	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.78	□□□□□ -0.2
VPS45-204	ENST00000460366	NUBP1	P53384	320 aa		13.77	□□□□□ -0.21
VPS45-204	ENST00000460366	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.77	□□□□□ -0.21
VPS45-204	ENST00000460366	USP6	P35125	1406 aa		13.76	□□□□□ -0.21
VPS45-204	ENST00000460366	SSH2	Q76I76	1423 aa		13.76	□□□□□ -0.21
VPS45-204	ENST00000460366	TNS3	Q68CZ2	1445 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	ARHGEF10	O15013	1369 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	PNPLA6	Q8IY17	1366 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	ANKRD36B	Q8N2N9	1353 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	KIF7	Q2M1P5	1343 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	SPATA31A6	Q5VVP1	1343 aa		13.75	□□□□□ -0.21
VPS45-204	ENST00000460366	CD163L1	Q9NR16	1453 aa		13.74	□□□□□ -0.21
VPS45-204	ENST00000460366	KTN1	Q86UP2	1357 aa	Known RBP	13.74	□□□□□ -0.21
VPS45-204	ENST00000460366	TTC21A	Q8NDW8	1320 aa		13.74	□□□□□ -0.21
VPS45-204	ENST00000460366	CLCN6	P51797	869 aa		13.74	□□□□□ -0.21
VPS45-204	ENST00000460366	TTC21B	Q7Z4L5	1316 aa		13.73	□□□□□ -0.21
VPS45-204	ENST00000460366	GALR2	O43603	387 aa	Predicted RBP	13.73	□□□□□ -0.21
VPS45-204	ENST00000460366	EDC4	Q6P2E9	1401 aa	Known RBP	13.73	□□□□□ -0.21
VPS45-204	ENST00000460366		A0A1W2PP64	1363 aa		13.72	□□□□□ -0.21
VPS45-204	ENST00000460366	CCDC7	Q96M83	1385 aa		13.72	□□□□□ -0.21
VPS45-204	ENST00000460366	POLR3GL	Q9BT43	218 aa		13.72	□□□□□ -0.21
VPS45-204	ENST00000460366	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.72	□□□□□ -0.21
VPS45-204	ENST00000460366	WASHC2A	Q641Q2	1341 aa		13.71	□□□□□ -0.21
VPS45-204	ENST00000460366	LMOD2	Q6P5Q4	547 aa		13.71	□□□□□ -0.21
VPS45-204	ENST00000460366	ABTB2	Q8N961	1025 aa		13.71	□□□□□ -0.21
VPS45-204	ENST00000460366	SHPRH	Q149N8	1683 aa		13.7	□□□□□ -0.22
VPS45-204	ENST00000460366	POTEI	P0CG38	1075 aa		13.7	□□□□□ -0.22
VPS45-204	ENST00000460366	NLRP13	Q86W25	1043 aa		13.7	□□□□□ -0.22
VPS45-204	ENST00000460366	AKAP12	Q02952	1782 aa		13.7	□□□□□ -0.22
VPS45-204	ENST00000460366	CARD14	Q9BXL6	1004 aa		13.69	□□□□□ -0.22
VPS45-204	ENST00000460366	PANK3	Q9H999	370 aa		13.69	□□□□□ -0.22
VPS45-204	ENST00000460366	USP31	Q70CQ4	1352 aa		13.69	□□□□□ -0.22
VPS45-204	ENST00000460366	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.68	□□□□□ -0.22
VPS45-204	ENST00000460366	ALS2	Q96Q42	1657 aa		13.68	□□□□□ -0.22
VPS45-204	ENST00000460366	MON2	Q7Z3U7	1717 aa		13.67	□□□□□ -0.22
VPS45-204	ENST00000460366	USP19	O94966	1318 aa		13.67	□□□□□ -0.22
VPS45-204	ENST00000460366	NLRP6	P59044	892 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 209.6 ms