RNA–Protein interactions for RNA: ENST00000447669.6

RFFL-206, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 5 BASIC

Gene RFFL, Length 2,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-206ENST00000447669 POLR3AO14802 1390 aaPredicted RBP33.56■■■□□ 2.96
RFFL-206ENST00000447669 TTC21BQ7Z4L5 1316 aa33.55■■■□□ 2.96
RFFL-206ENST00000447669 ANKRD26Q9UPS8 1709 aa33.54■■■□□ 2.96
RFFL-206ENST00000447669 NRKQ7Z2Y5 1582 aa33.54■■■□□ 2.96
RFFL-206ENST00000447669 ATF3P18847 181 aa33.53■■■□□ 2.96
RFFL-206ENST00000447669 SENP3-EIF4A1A0A087X0R7 540 aa33.53■■■□□ 2.96
RFFL-206ENST00000447669 SSH2Q76I76 1423 aa33.49■■■□□ 2.95
RFFL-206ENST00000447669 C1orf167Q5SNV9 1468 aa33.49■■■□□ 2.95
RFFL-206ENST00000447669 NCOA3Q9Y6Q9 1424 aa33.49■■■□□ 2.95
RFFL-206ENST00000447669 MTHFSP49914 203 aa33.48■■■□□ 2.95
RFFL-206ENST00000447669 MSH6P52701 1360 aa33.47■■■□□ 2.95
RFFL-206ENST00000447669 FOXO3O43524 673 aa33.47■■■□□ 2.95
RFFL-206ENST00000447669 XPCQ01831 940 aaPredicted RBP33.47■■■□□ 2.95
RFFL-206ENST00000447669 MST1RQ04912 1400 aa33.46■■■□□ 2.95
RFFL-206ENST00000447669 HNRNPUQ00839 825 aaKnown RBP eCLIP33.45■■■□□ 2.94
RFFL-206ENST00000447669 PAK3O75914 559 aaPredicted RBP33.44■■■□□ 2.94
RFFL-206ENST00000447669 NUTM2GQ5VZR2 741 aa33.43■■■□□ 2.94
RFFL-206ENST00000447669 COG3Q96JB2 828 aa33.43■■■□□ 2.94
RFFL-206ENST00000447669 CADPS2Q86UW7 1296 aa33.43■■■□□ 2.94
RFFL-206ENST00000447669 PSME1Q06323 249 aa33.41■■■□□ 2.94
RFFL-206ENST00000447669 DDX17Q92841 729 aaKnown RBP33.41■■■□□ 2.94
RFFL-206ENST00000447669 DCCP43146 1447 aa33.41■■■□□ 2.94
RFFL-206ENST00000447669 SOX12O15370 315 aa33.38■■■□□ 2.93
RFFL-206ENST00000447669 MAP2P11137 1827 aaKnown RBP33.38■■■□□ 2.93
RFFL-206ENST00000447669 PIK3C2AO00443 1686 aa33.37■■■□□ 2.93
RFFL-206ENST00000447669 ADAMTS8Q9UP79 889 aa33.37■■■□□ 2.93
RFFL-206ENST00000447669 TTC21AQ8NDW8 1320 aa33.37■■■□□ 2.93
RFFL-206ENST00000447669 PPM1GO15355 546 aaPredicted RBP33.36■■■□□ 2.93
RFFL-206ENST00000447669 AEBP2Q6ZN18 517 aaPredicted RBP33.36■■■□□ 2.93
RFFL-206ENST00000447669 RRS1Q15050 365 aaKnown RBP33.35■■■□□ 2.93
RFFL-206ENST00000447669 POLKQ9UBT6 870 aa33.35■■■□□ 2.93
RFFL-206ENST00000447669 OVOS2A0A0J9YW53 1432 aa33.34■■■□□ 2.93
RFFL-206ENST00000447669 OVOS2Q6IE36 1432 aa33.34■■■□□ 2.93
RFFL-206ENST00000447669 ABTB2Q8N961 1025 aa33.34■■■□□ 2.93
RFFL-206ENST00000447669 EMILIN1Q9Y6C2 1016 aa33.34■■■□□ 2.93
RFFL-206ENST00000447669 CENPBP07199 599 aaPredicted RBP33.33■■■□□ 2.93
RFFL-206ENST00000447669 NLRP6P59044 892 aa33.33■■■□□ 2.93
RFFL-206ENST00000447669 WDR43Q15061 677 aaKnown RBP eCLIP33.31■■■□□ 2.92
RFFL-206ENST00000447669 PLEKHG5O94827 1062 aa33.3■■■□□ 2.92
RFFL-206ENST00000447669 KRT28Q7Z3Y7 464 aa33.29■■■□□ 2.92
RFFL-206ENST00000447669 SLAIN2Q9P270 581 aa33.29■■■□□ 2.92
RFFL-206ENST00000447669 SHPRHQ149N8 1683 aa33.28■■■□□ 2.92
RFFL-206ENST00000447669 KIF1AQ12756 1690 aa33.28■■■□□ 2.92
RFFL-206ENST00000447669 SCAF1Q9H7N4 1312 aaKnown RBP33.27■■■□□ 2.92
RFFL-206ENST00000447669 LTBP4Q8N2S1 1624 aa33.27■■■□□ 2.92
RFFL-206ENST00000447669 MARF1Q9Y4F3 1742 aaKnown RBP33.27■■■□□ 2.92
RFFL-206ENST00000447669 BRINP3Q76B58 766 aa33.26■■■□□ 2.92
RFFL-206ENST00000447669 CFAP53Q96M91 514 aa33.26■■■□□ 2.92
RFFL-206ENST00000447669 LMOD2Q6P5Q4 547 aa33.26■■■□□ 2.91
RFFL-206ENST00000447669 USP31Q70CQ4 1352 aa33.24■■■□□ 2.91
RFFL-206ENST00000447669 SALL2Q9Y467 1007 aaPredicted RBP33.24■■■□□ 2.91
RFFL-206ENST00000447669 AATKQ6ZMQ8 1374 aa33.23■■■□□ 2.91
RFFL-206ENST00000447669 CCDC146Q8IYE0 955 aa33.23■■■□□ 2.91
RFFL-206ENST00000447669 TRPM3Q9HCF6 1732 aaPredicted RBP33.22■■■□□ 2.91
RFFL-206ENST00000447669 COL3A1P02461 1466 aaPredicted RBP33.22■■■□□ 2.91
RFFL-206ENST00000447669 PNPLA6Q8IY17 1366 aa33.19■■■□□ 2.9
RFFL-206ENST00000447669 BLMP54132 1417 aaPredicted RBP33.17■■■□□ 2.9
RFFL-206ENST00000447669 U2SURPO15042 1029 aaKnown RBP33.16■■■□□ 2.9
RFFL-206ENST00000447669 PEAK1Q9H792 1746 aa33.15■■■□□ 2.9
RFFL-206ENST00000447669 MAP3K19Q56UN5 1328 aa33.15■■■□□ 2.9
RFFL-206ENST00000447669 NPHP3Q7Z494 1330 aa33.15■■■□□ 2.9
RFFL-206ENST00000447669 SMG6Q86US8 1419 aaKnown RBP33.14■■■□□ 2.9
RFFL-206ENST00000447669 DIAPH1O60610 1272 aaKnown RBP33.14■■■□□ 2.9
RFFL-206ENST00000447669 U2AF1L5P0DN76 240 aaPredicted RBP33.14■■■□□ 2.9
RFFL-206ENST00000447669 U2AF1Q01081 240 aaKnown RBP eCLIP33.14■■■□□ 2.9
RFFL-206ENST00000447669 USP54Q70EL1 1684 aa33.12■■■□□ 2.89
RFFL-206ENST00000447669 ZBED9Q6R2W3 1325 aa33.12■■■□□ 2.89
RFFL-206ENST00000447669 PXDNQ92626 1479 aa33.11■■■□□ 2.89
RFFL-206ENST00000447669 HSP90AB2PQ58FF8 381 aa33.11■■■□□ 2.89
RFFL-206ENST00000447669 CDK12Q9NYV4 1490 aaPredicted RBP33.1■■■□□ 2.89
RFFL-206ENST00000447669 INSRP06213 1382 aa33.09■■■□□ 2.89
RFFL-206ENST00000447669 ALS2Q96Q42 1657 aa33.09■■■□□ 2.89
RFFL-206ENST00000447669 NUDCQ9Y266 331 aa33.07■■■□□ 2.88
RFFL-206ENST00000447669 IL13P35225 146 aa33.06■■■□□ 2.88
RFFL-206ENST00000447669 ZBTB7CA1YPR0 619 aa33.06■■■□□ 2.88
RFFL-206ENST00000447669 APAF1O14727 1248 aa33.04■■■□□ 2.88
RFFL-206ENST00000447669 AMPHP49418 695 aa33.04■■■□□ 2.88
RFFL-206ENST00000447669 CABLES1Q8TDN4 633 aa33.04■■■□□ 2.88
RFFL-206ENST00000447669 GCP02774 474 aa33.03■■■□□ 2.88
RFFL-206ENST00000447669 SBNO1A3KN83 1393 aa33.03■■■□□ 2.88
RFFL-206ENST00000447669 NFAT5O94916 1531 aa33.02■■■□□ 2.88
RFFL-206ENST00000447669 SPATA31A3Q5VYP0 1347 aa33.02■■■□□ 2.88
RFFL-206ENST00000447669 EIF4A2Q14240 407 aaKnown RBP33.02■■■□□ 2.88
RFFL-206ENST00000447669 LTN1O94822 1766 aa33.01■■■□□ 2.88
RFFL-206ENST00000447669 TNS3Q68CZ2 1445 aa33.01■■■□□ 2.87
RFFL-206ENST00000447669 HMOX1P09601 288 aa33.01■■■□□ 2.87
RFFL-206ENST00000447669 MED1Q15648 1581 aaPredicted RBP33■■■□□ 2.87
RFFL-206ENST00000447669 SOS2Q07890 1332 aaPredicted RBP33■■■□□ 2.87
RFFL-206ENST00000447669 USP19O94966 1318 aa32.99■■■□□ 2.87
RFFL-206ENST00000447669 RRP7AQ9Y3A4 280 aaKnown RBP32.98■■■□□ 2.87
RFFL-206ENST00000447669 FLT4P35916 1363 aa32.98■■■□□ 2.87
RFFL-206ENST00000447669 ROBO1Q9Y6N7 1651 aa32.97■■■□□ 2.87
RFFL-206ENST00000447669 HOXC9P31274 260 aa32.97■■■□□ 2.87
RFFL-206ENST00000447669 KCNH5Q8NCM2 988 aa32.97■■■□□ 2.87
RFFL-206ENST00000447669 RUNDC1Q96C34 613 aa32.97■■■□□ 2.87
RFFL-206ENST00000447669 SLIT3O75094 1523 aa32.96■■■□□ 2.87
RFFL-206ENST00000447669 NEUROD2Q15784 382 aa32.96■■■□□ 2.87
RFFL-206ENST00000447669 ZC3H6P61129 1189 aaKnown RBP32.95■■■□□ 2.87
RFFL-206ENST00000447669 PLEKHF1Q96S99 279 aa32.95■■■□□ 2.87
RFFL-206ENST00000447669 LTV1Q96GA3 475 aaPredicted RBP32.94■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms